Wall clock time and date at job start Mon Mar 30 2020 03:37:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.09004 * 109.46088 * 2 1
4 4 C 1.53098 * 109.45265 * 119.96812 * 2 1 3
5 5 C 1.53446 * 109.72718 * 50.13262 * 4 2 1
6 6 C 1.50561 * 108.30176 * 49.99177 * 5 4 2
7 7 O 1.33169 * 129.73471 * 163.26416 * 6 5 4
8 8 N 1.21454 * 111.27381 * 180.19883 * 7 6 5
9 9 C 1.30699 * 111.69198 * 359.90728 * 8 7 6
10 10 C 1.35515 * 123.81001 * 343.30994 * 6 5 4
11 11 C 1.50077 * 124.86074 * 359.79425 * 10 6 5
12 12 C 1.50701 * 109.70956 * 103.53236 * 11 10 6
13 13 H 1.08001 * 119.99347 * 240.61602 * 12 11 10
14 14 C 1.37869 * 120.00296 * 60.89598 * 12 11 10
15 15 N 1.31512 * 120.00250 * 6.83237 * 14 12 11
16 16 Si 1.86803 * 120.00103 * 186.83053 * 14 12 11
17 17 H 1.48498 * 109.46908 * 359.97438 * 16 14 12
18 18 H 1.48498 * 109.47358 * 119.99846 * 16 14 12
19 19 H 1.48497 * 109.47341 * 239.99917 * 16 14 12
20 20 C 1.53004 * 109.74467 * 224.13971 * 11 10 6
21 21 N 1.46900 * 109.46840 * 175.13718 * 20 11 10
22 22 H 1.08996 * 109.47126 * 179.97438 * 1 2 3
23 23 H 1.09000 * 109.46611 * 299.97512 * 1 2 3
24 24 H 1.09001 * 109.46762 * 59.97280 * 1 2 3
25 25 H 1.09004 * 109.43184 * 170.21070 * 4 2 1
26 26 H 1.08998 * 109.43064 * 290.11104 * 4 2 1
27 27 H 1.08997 * 109.69847 * 169.69246 * 5 4 2
28 28 H 1.09002 * 109.69600 * 290.29121 * 5 4 2
29 29 H 1.08004 * 127.01837 * 180.02562 * 9 8 7
30 30 H 0.96998 * 120.00648 * 180.02562 * 15 14 12
31 31 H 1.08998 * 109.47017 * 295.13636 * 20 11 10
32 32 H 1.09002 * 109.47099 * 55.13502 * 20 11 10
33 33 H 1.00902 * 110.99785 * 56.87265 * 21 20 11
34 34 H 1.00899 * 110.99715 * 180.81663 * 21 20 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8932 1.0278 0.0000
4 6 2.0399 -0.7211 1.2506
5 6 1.3394 -2.0795 1.3870
6 6 1.4403 -2.7981 0.0678
7 8 1.2582 -4.0864 -0.2158
8 7 1.4291 -4.3058 -1.3981
9 6 1.7400 -3.2173 -2.0514
10 6 1.7548 -2.1884 -1.1008
11 6 2.0416 -0.7233 -1.2540
12 6 3.5265 -0.5081 -1.3949
13 1 4.0560 0.0931 -0.6706
14 6 4.2079 -1.0738 -2.4515
15 7 3.5460 -1.6871 -3.4081
16 14 6.0716 -0.9691 -2.5244
17 1 6.5727 -0.2321 -1.3366
18 1 6.6444 -2.3391 -2.5354
19 1 6.4792 -0.2522 -3.7593
20 6 1.3222 -0.1824 -2.4913
21 7 1.5111 1.2722 -2.5707
22 1 -0.3633 -1.0276 -0.0005
23 1 -0.3632 0.5135 0.8902
24 1 -0.3633 0.5143 -0.8898
25 1 3.1158 -0.8748 1.1673
26 1 1.8274 -0.1145 2.1309
27 1 1.8270 -2.6679 2.1642
28 1 0.2909 -1.9280 1.6435
29 1 1.9433 -3.1289 -3.1084
30 1 4.0253 -2.0854 -4.1513
31 1 1.7337 -0.6515 -3.3850
32 1 0.2580 -0.4073 -2.4202
33 1 2.4918 1.5092 -2.5861
34 1 1.0339 1.6556 -3.3728
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260346944.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:37:42
Heat of formation + Delta-G solvation = 54.828046 kcal
Electronic energy + Delta-G solvation = -18196.265585 eV
Core-core repulsion = 15518.044807 eV
Total energy + Delta-G solvation = -2678.220779 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-43.70777 -38.26641 -34.12635 -32.42613 -31.90710 -30.37411 -29.02578 -27.18298
-24.21885 -24.03356 -22.18070 -21.00520 -19.92172 -17.54214 -16.50648 -16.39944
-15.85888 -14.97856 -14.56269 -14.25599 -13.62059 -13.26760 -12.96763 -12.50180
-12.24403 -11.98316 -11.67526 -11.47309 -11.25457 -10.92900 -10.79093 -10.68683
-10.28667 -10.24571 -10.09484 -9.61641 -9.40417 -9.03777 -8.80425 -8.51489
-7.78427 -7.44897 -6.12274 -4.24515 2.62348 3.18789 3.29270 3.31589
3.72112 4.16019 4.28949 5.11094 5.52017 5.63444 5.66960 5.78799
5.94068 6.04754 6.13451 6.23711 6.30726 6.40551 6.46625 6.63315
6.66685 6.78683 6.89357 6.97281 7.06126 7.20643 7.26239 7.38845
7.61268 7.65943 7.89704 8.24575 8.36902 8.56411 8.80274 9.39911
9.45091 10.82813
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.021262 B = 0.013645 C = 0.011313
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1316.589086 B = 2051.584910 C = 2474.530185
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.067 4.067
3 H 0.074 0.926
4 C -0.111 4.111
5 C -0.021 4.021
6 C -0.095 4.095
7 O 0.071 5.929
8 N -0.416 5.416
9 C 0.032 3.968
10 C -0.118 4.118
11 C 0.145 3.855
12 C -0.493 4.493
13 H 0.063 0.937
14 C 0.066 3.934
15 N -0.884 5.884
16 Si 0.891 3.109
17 H -0.272 1.272
18 H -0.285 1.285
19 H -0.285 1.285
20 C 0.068 3.932
21 N -0.846 5.846
22 H 0.043 0.957
23 H 0.034 0.966
24 H 0.061 0.939
25 H 0.073 0.927
26 H 0.056 0.944
27 H 0.069 0.931
28 H 0.075 0.925
29 H 0.200 0.800
30 H 0.261 0.739
31 H 0.070 0.930
32 H 0.028 0.972
33 H 0.343 0.657
34 H 0.313 0.687
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.611 2.675 4.524 6.377
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.085 4.085
3 H 0.092 0.908
4 C -0.148 4.148
5 C -0.059 4.059
6 C -0.159 4.159
7 O 0.011 5.989
8 N -0.127 5.127
9 C -0.144 4.144
10 C -0.122 4.122
11 C 0.144 3.856
12 C -0.531 4.531
13 H 0.081 0.919
14 C -0.136 4.136
15 N -0.523 5.523
16 Si 0.719 3.281
17 H -0.197 1.197
18 H -0.211 1.211
19 H -0.211 1.211
20 C -0.063 4.063
21 N -0.373 5.373
22 H 0.062 0.938
23 H 0.053 0.947
24 H 0.080 0.920
25 H 0.092 0.908
26 H 0.075 0.925
27 H 0.088 0.912
28 H 0.093 0.907
29 H 0.217 0.783
30 H 0.071 0.929
31 H 0.088 0.912
32 H 0.046 0.954
33 H 0.157 0.843
34 H 0.122 0.878
Dipole moment (debyes) X Y Z Total
from point charges -4.109 1.311 4.736 6.406
hybrid contribution 1.834 0.379 -1.163 2.204
sum -2.275 1.690 3.573 4.561
Atomic orbital electron populations
1.21939 0.97214 1.00448 1.00621 1.21071 0.93726 0.99573 0.94171
0.90762 1.21668 1.01215 0.93695 0.98258 1.19976 1.01194 0.94911
0.89819 1.23920 1.08517 0.84252 0.99197 1.84519 1.67172 1.25987
1.21246 1.74153 1.22555 1.25617 0.90379 1.25170 0.98352 0.87415
1.03446 1.21252 1.00232 1.00253 0.90456 1.16617 0.94578 0.83677
0.90718 1.21111 0.91719 1.30766 1.09494 0.91885 1.24922 0.98286
0.95009 0.95346 1.69690 1.34834 1.37294 1.10475 0.86542 0.85799
0.77804 0.77953 1.19683 1.21136 1.21134 1.21900 0.96085 0.87003
1.01314 1.58831 1.18412 1.13609 1.46496 0.93796 0.94654 0.91994
0.90797 0.92492 0.91250 0.90655 0.78346 0.92892 0.91164 0.95389
0.84339 0.87758
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.54 7.79 37.16 0.29 -2.25 16
2 C -0.07 -1.28 1.89 -90.29 -0.17 -1.45 16
3 H 0.07 1.48 7.88 -51.93 -0.41 1.07 16
4 C -0.11 -1.93 5.49 -26.45 -0.15 -2.07 16
5 C -0.02 -0.35 5.66 -27.72 -0.16 -0.51 16
6 C -0.09 -2.00 6.65 -35.35 -0.24 -2.23 16
7 O 0.07 1.58 11.20 19.23 0.22 1.79 16
8 N -0.42 -9.84 12.10 30.41 0.37 -9.47 16
9 C 0.03 0.78 10.52 -17.34 -0.18 0.59 16
10 C -0.12 -2.69 4.01 -105.21 -0.42 -3.11 16
11 C 0.15 3.18 0.14 -156.83 -0.02 3.16 16
12 C -0.49 -11.85 6.25 -34.44 -0.22 -12.07 16
13 H 0.06 1.54 7.54 -52.49 -0.40 1.14 16
14 C 0.07 1.62 5.14 -17.82 -0.09 1.53 16
15 N -0.88 -22.01 7.74 55.43 0.43 -21.58 16
16 Si 0.89 20.02 29.54 -169.99 -5.02 14.99 16
17 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16
18 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16
19 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16
20 C 0.07 1.45 4.62 -3.82 -0.02 1.43 16
21 N -0.85 -16.11 8.74 -10.37 -0.09 -16.20 16
22 H 0.04 0.79 5.66 -51.93 -0.29 0.50 16
23 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16
24 H 0.06 1.13 6.26 -51.93 -0.33 0.80 16
25 H 0.07 1.42 7.21 -51.93 -0.37 1.04 16
26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16
27 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16
28 H 0.08 1.14 6.99 -51.93 -0.36 0.78 16
29 H 0.20 4.88 6.38 -52.48 -0.33 4.55 16
30 H 0.26 6.38 8.31 -40.82 -0.34 6.04 16
31 H 0.07 1.68 5.72 -51.93 -0.30 1.39 16
32 H 0.03 0.60 6.59 -51.93 -0.34 0.25 16
33 H 0.34 6.90 8.08 -39.29 -0.32 6.58 16
34 H 0.31 5.31 9.08 -39.29 -0.36 4.95 16
LS Contribution 258.92 15.07 3.90 3.90
Total: -1.00 -25.49 258.92 -5.78 -31.27
By element:
Atomic # 1 Polarization: 16.49 SS G_CDS: -4.21 Total: 12.28 kcal
Atomic # 6 Polarization: -15.62 SS G_CDS: -1.37 Total: -16.99 kcal
Atomic # 7 Polarization: -47.95 SS G_CDS: 0.71 Total: -47.25 kcal
Atomic # 8 Polarization: 1.58 SS G_CDS: 0.22 Total: 1.79 kcal
Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 14.99 kcal
Total LS contribution 3.90 Total: 3.90 kcal
Total: -25.49 -5.78 -31.27 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260346944.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 86.099 kcal
(2) G-P(sol) polarization free energy of solvation -25.492 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.607 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.779 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.271 kcal
(6) G-S(sol) free energy of system = (1) + (5) 54.828 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds