Wall clock time and date at job start Mon Mar 30 2020 03:37:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.09004 * 109.46088 * 2 1
4 4 C 1.53098 * 109.45265 * 119.96812 * 2 1 3
5 5 C 1.53446 * 109.72718 * 50.13262 * 4 2 1
6 6 C 1.50561 * 108.30176 * 49.99177 * 5 4 2
7 7 O 1.33169 * 129.73471 * 163.26416 * 6 5 4
8 8 N 1.21454 * 111.27381 * 180.19883 * 7 6 5
9 9 C 1.30699 * 111.69198 * 359.90728 * 8 7 6
10 10 C 1.35515 * 123.81001 * 343.30994 * 6 5 4
11 11 C 1.50077 * 124.86074 * 359.79425 * 10 6 5
12 12 C 1.50701 * 109.70956 * 103.53236 * 11 10 6
13 13 H 1.08001 * 119.99347 * 240.61602 * 12 11 10
14 14 C 1.37869 * 120.00296 * 60.89598 * 12 11 10
15 15 N 1.31512 * 120.00250 * 6.83237 * 14 12 11
16 16 Si 1.86803 * 120.00103 * 186.83053 * 14 12 11
17 17 H 1.48498 * 109.46908 * 359.97438 * 16 14 12
18 18 H 1.48498 * 109.47358 * 119.99846 * 16 14 12
19 19 H 1.48497 * 109.47341 * 239.99917 * 16 14 12
20 20 C 1.53004 * 109.74467 * 224.13971 * 11 10 6
21 21 N 1.46900 * 109.46840 * 175.13718 * 20 11 10
22 22 H 1.08996 * 109.47126 * 179.97438 * 1 2 3
23 23 H 1.09000 * 109.46611 * 299.97512 * 1 2 3
24 24 H 1.09001 * 109.46762 * 59.97280 * 1 2 3
25 25 H 1.09004 * 109.43184 * 170.21070 * 4 2 1
26 26 H 1.08998 * 109.43064 * 290.11104 * 4 2 1
27 27 H 1.08997 * 109.69847 * 169.69246 * 5 4 2
28 28 H 1.09002 * 109.69600 * 290.29121 * 5 4 2
29 29 H 1.08004 * 127.01837 * 180.02562 * 9 8 7
30 30 H 0.96998 * 120.00648 * 180.02562 * 15 14 12
31 31 H 1.08998 * 109.47017 * 295.13636 * 20 11 10
32 32 H 1.09002 * 109.47099 * 55.13502 * 20 11 10
33 33 H 1.00902 * 110.99785 * 56.87265 * 21 20 11
34 34 H 1.00899 * 110.99715 * 180.81663 * 21 20 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8932 1.0278 0.0000
4 6 2.0399 -0.7211 1.2506
5 6 1.3394 -2.0795 1.3870
6 6 1.4403 -2.7981 0.0678
7 8 1.2582 -4.0864 -0.2158
8 7 1.4291 -4.3058 -1.3981
9 6 1.7400 -3.2173 -2.0514
10 6 1.7548 -2.1884 -1.1008
11 6 2.0416 -0.7233 -1.2540
12 6 3.5265 -0.5081 -1.3949
13 1 4.0560 0.0931 -0.6706
14 6 4.2079 -1.0738 -2.4515
15 7 3.5460 -1.6871 -3.4081
16 14 6.0716 -0.9691 -2.5244
17 1 6.5727 -0.2321 -1.3366
18 1 6.6444 -2.3391 -2.5354
19 1 6.4792 -0.2522 -3.7593
20 6 1.3222 -0.1824 -2.4913
21 7 1.5111 1.2722 -2.5707
22 1 -0.3633 -1.0276 -0.0005
23 1 -0.3632 0.5135 0.8902
24 1 -0.3633 0.5143 -0.8898
25 1 3.1158 -0.8748 1.1673
26 1 1.8274 -0.1145 2.1309
27 1 1.8270 -2.6679 2.1642
28 1 0.2909 -1.9280 1.6435
29 1 1.9433 -3.1289 -3.1084
30 1 4.0253 -2.0854 -4.1513
31 1 1.7337 -0.6515 -3.3850
32 1 0.2580 -0.4073 -2.4202
33 1 2.4918 1.5092 -2.5861
34 1 1.0339 1.6556 -3.3728
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260346944.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:37:42
Heat of formation + Delta-G solvation = 39.287794 kcal
Electronic energy + Delta-G solvation = -18196.939461 eV
Core-core repulsion = 15518.044807 eV
Total energy + Delta-G solvation = -2678.894654 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-45.48685 -39.85643 -35.74437 -34.14826 -33.72387 -31.97902 -30.63966 -28.78722
-25.98680 -25.53013 -23.94644 -22.61919 -21.61754 -19.20703 -18.21483 -18.16675
-17.60381 -16.73594 -16.18217 -15.78235 -15.22496 -14.97304 -14.64818 -14.06589
-13.76392 -13.61258 -13.28464 -13.10803 -12.91824 -12.59878 -12.41186 -12.37962
-12.01570 -11.84419 -11.70054 -11.22739 -11.01688 -10.61783 -10.56003 -10.36609
-9.49185 -9.09849 -7.97386 -6.14186 0.90735 1.36986 1.44710 1.50457
1.91387 2.43534 2.54645 3.22640 3.87428 4.09434 4.22496 4.31138
4.40963 4.56370 4.70018 4.81638 4.82587 4.87493 5.03560 5.10464
5.22672 5.25947 5.31940 5.43211 5.45807 5.57100 5.66294 5.77953
5.80371 6.00846 6.14838 6.45317 6.71241 6.86010 7.09520 7.51297
7.69051 8.93382
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.021262 B = 0.013645 C = 0.011313
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1316.589086 B = 2051.584910 C = 2474.530185
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.066 4.066
3 H 0.066 0.934
4 C -0.108 4.108
5 C -0.020 4.020
6 C -0.084 4.084
7 O 0.075 5.925
8 N -0.432 5.432
9 C 0.015 3.985
10 C -0.142 4.142
11 C 0.142 3.858
12 C -0.494 4.494
13 H 0.057 0.943
14 C 0.030 3.970
15 N -0.895 5.895
16 Si 0.935 3.065
17 H -0.268 1.268
18 H -0.299 1.299
19 H -0.285 1.285
20 C 0.078 3.922
21 N -0.835 5.835
22 H 0.037 0.963
23 H 0.064 0.936
24 H 0.049 0.951
25 H 0.051 0.949
26 H 0.094 0.906
27 H 0.095 0.905
28 H 0.104 0.896
29 H 0.186 0.814
30 H 0.255 0.745
31 H 0.041 0.959
32 H 0.026 0.974
33 H 0.339 0.661
34 H 0.326 0.674
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.208 3.507 6.563 8.549
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.085 4.085
3 H 0.085 0.915
4 C -0.145 4.145
5 C -0.058 4.058
6 C -0.148 4.148
7 O 0.015 5.985
8 N -0.143 5.143
9 C -0.160 4.160
10 C -0.147 4.147
11 C 0.140 3.860
12 C -0.532 4.532
13 H 0.075 0.925
14 C -0.170 4.170
15 N -0.534 5.534
16 Si 0.763 3.237
17 H -0.193 1.193
18 H -0.227 1.227
19 H -0.211 1.211
20 C -0.054 4.054
21 N -0.362 5.362
22 H 0.056 0.944
23 H 0.083 0.917
24 H 0.069 0.931
25 H 0.070 0.930
26 H 0.113 0.887
27 H 0.114 0.886
28 H 0.122 0.878
29 H 0.203 0.797
30 H 0.065 0.935
31 H 0.060 0.940
32 H 0.044 0.956
33 H 0.151 0.849
34 H 0.137 0.863
Dipole moment (debyes) X Y Z Total
from point charges -4.712 2.159 6.764 8.521
hybrid contribution 2.000 0.128 -1.788 2.685
sum -2.712 2.286 4.977 6.111
Atomic orbital electron populations
1.21841 0.95737 1.00274 1.01529 1.21023 0.94897 0.98858 0.93694
0.91530 1.21654 0.99785 0.94314 0.98764 1.20254 1.03253 0.94270
0.87996 1.24706 1.06094 0.83463 1.00557 1.84488 1.66716 1.26742
1.20585 1.74122 1.23412 1.25748 0.91019 1.25112 0.99275 0.88325
1.03336 1.21427 1.01685 1.00624 0.90934 1.16662 0.93420 0.83624
0.92265 1.21288 0.93079 1.30042 1.08810 0.92529 1.25406 1.00493
0.95455 0.95637 1.69822 1.35193 1.37838 1.10592 0.85864 0.83203
0.76732 0.77893 1.19250 1.22668 1.21088 1.21686 0.95585 0.87921
1.00163 1.58780 1.18065 1.12152 1.47248 0.94391 0.91747 0.93147
0.92975 0.88744 0.88636 0.87788 0.79736 0.93481 0.94049 0.95573
0.84899 0.86338
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -4.36 7.79 71.98 0.56 -3.80 16
2 C -0.07 -2.37 1.89 -10.58 -0.02 -2.39 16
3 H 0.07 2.49 7.88 -2.38 -0.02 2.47 16
4 C -0.11 -3.36 5.49 30.78 0.17 -3.19 16
5 C -0.02 -0.59 5.66 29.95 0.17 -0.42 16
6 C -0.08 -3.36 6.65 25.01 0.17 -3.20 16
7 O 0.08 3.24 11.20 78.84 0.88 4.13 16
8 N -0.43 -20.42 12.10 -58.30 -0.71 -21.12 16
9 C 0.01 0.72 10.52 85.31 0.90 1.62 16
10 C -0.14 -6.43 4.01 -20.24 -0.08 -6.51 16
11 C 0.14 6.09 0.14 -53.69 -0.01 6.08 16
12 C -0.49 -23.58 6.25 25.60 0.16 -23.42 16
13 H 0.06 2.73 7.54 -2.91 -0.02 2.70 16
14 C 0.03 1.46 5.14 84.65 0.43 1.90 16
15 N -0.90 -45.51 7.74 21.44 0.17 -45.34 16
16 Si 0.93 41.32 29.54 68.60 2.03 43.35 16
17 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16
18 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16
19 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16
20 C 0.08 3.32 4.62 86.30 0.40 3.72 16
21 N -0.83 -31.14 8.74 -186.71 -1.63 -32.78 16
22 H 0.04 1.24 5.66 -2.39 -0.01 1.23 16
23 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16
24 H 0.05 1.71 6.26 -2.39 -0.01 1.70 16
25 H 0.05 1.86 7.21 -2.38 -0.02 1.84 16
26 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16
27 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16
28 H 0.10 2.60 6.99 -2.39 -0.02 2.58 16
29 H 0.19 9.45 6.38 -2.91 -0.02 9.43 16
30 H 0.26 12.85 8.31 -92.71 -0.77 12.08 16
31 H 0.04 2.03 5.72 -2.39 -0.01 2.01 16
32 H 0.03 1.11 6.59 -2.39 -0.02 1.09 16
33 H 0.34 13.41 8.08 -89.69 -0.72 12.68 16
34 H 0.33 10.75 9.08 -89.69 -0.81 9.94 16
Total: -1.00 -54.26 258.92 3.19 -51.07
By element:
Atomic # 1 Polarization: 30.71 SS G_CDS: -0.40 Total: 30.31 kcal
Atomic # 6 Polarization: -32.47 SS G_CDS: 2.85 Total: -29.62 kcal
Atomic # 7 Polarization: -97.07 SS G_CDS: -2.17 Total: -99.24 kcal
Atomic # 8 Polarization: 3.24 SS G_CDS: 0.88 Total: 4.13 kcal
Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal
Total: -54.26 3.19 -51.07 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260346944.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 90.362 kcal
(2) G-P(sol) polarization free energy of solvation -54.262 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.100 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.188 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.075 kcal
(6) G-S(sol) free energy of system = (1) + (5) 39.288 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds