Wall clock time and date at job start Mon Mar 30 2020 03:04:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.50705 * 109.46801 * 2 1
4 4 N 1.32041 * 120.58464 * 270.02694 * 3 2 1
5 5 C 1.32008 * 121.25396 * 179.97438 * 4 3 2
6 6 C 1.50696 * 118.77204 * 179.97438 * 5 4 3
7 7 C 1.52998 * 109.47223 * 119.99534 * 6 5 4
8 8 C 1.53001 * 109.47279 * 239.99986 * 6 5 4
9 9 N 1.31903 * 122.45798 * 359.97438 * 5 4 3
10 10 C 1.32534 * 120.98953 * 0.02562 * 9 5 4
11 11 O 1.35274 * 120.68868 * 180.02562 * 10 9 5
12 12 C 1.40883 * 120.57779 * 89.99858 * 3 2 1
13 13 C 1.41181 * 121.08841 * 359.75181 * 12 3 2
14 14 H 1.07999 * 119.99554 * 36.14496 * 13 12 3
15 15 C 1.39954 * 120.00003 * 216.14287 * 13 12 3
16 16 N 1.30852 * 119.99731 * 210.93999 * 15 13 12
17 17 Si 1.86802 * 119.99909 * 30.94436 * 15 13 12
18 18 H 1.48498 * 109.46917 * 95.36777 * 17 15 13
19 19 H 1.48508 * 109.46911 * 215.36289 * 17 15 13
20 20 H 1.48495 * 109.47283 * 335.36445 * 17 15 13
21 21 H 1.09000 * 109.47633 * 299.99201 * 1 2 3
22 22 H 1.08997 * 109.47824 * 60.00264 * 1 2 3
23 23 H 1.09004 * 109.46838 * 180.02562 * 1 2 3
24 24 H 1.08995 * 109.46989 * 240.00182 * 2 1 3
25 25 H 1.08992 * 109.47140 * 119.99919 * 2 1 3
26 26 H 1.08999 * 109.46782 * 359.97438 * 6 5 4
27 27 H 1.09002 * 109.47276 * 180.02562 * 7 6 5
28 28 H 1.09000 * 109.47208 * 299.99767 * 7 6 5
29 29 H 1.08999 * 109.47280 * 60.00258 * 7 6 5
30 30 H 1.08994 * 109.47353 * 59.99157 * 8 6 5
31 31 H 1.08992 * 109.47436 * 180.02562 * 8 6 5
32 32 H 1.09010 * 109.46862 * 299.99967 * 8 6 5
33 33 H 0.96704 * 113.99965 * 274.67463 * 11 10 9
34 34 H 0.97006 * 119.99908 * 179.97438 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4209 0.0000
4 7 2.2557 2.0545 -1.1367
5 6 2.6951 3.2992 -1.1521
6 6 2.9317 3.9685 -2.4814
7 6 2.0455 5.2107 -2.5919
8 6 4.4015 4.3791 -2.5913
9 7 2.9349 3.9790 -0.0475
10 6 2.7425 3.4334 1.1449
11 8 2.9899 4.1363 2.2738
12 6 2.2711 2.0966 1.2129
13 6 2.0428 1.4666 2.4556
14 1 2.2518 0.4136 2.5736
15 6 1.5457 2.2067 3.5345
16 7 1.8758 1.8815 4.7582
17 14 0.4111 3.6585 3.2274
18 1 -1.0015 3.2167 3.3478
19 1 0.6845 4.7208 4.2286
20 1 0.6483 4.1921 1.8621
21 1 -0.3634 0.5137 0.8900
22 1 -0.3634 0.5138 -0.8899
23 1 -0.3633 -1.0277 0.0005
24 1 1.8933 -0.5138 -0.8900
25 1 1.8933 -0.5138 0.8899
26 1 2.6875 3.2748 -3.2860
27 1 2.2162 5.6946 -3.5536
28 1 0.9984 4.9182 -2.5137
29 1 2.2900 5.9043 -1.7874
30 1 5.0328 3.4941 -2.5126
31 1 4.5725 4.8635 -3.5526
32 1 4.6461 5.0726 -1.7867
33 1 3.9123 4.1049 2.5626
34 1 1.5316 2.3947 5.5060
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260471377.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:04:51
Heat of formation + Delta-G solvation = -26.001107 kcal
Electronic energy + Delta-G solvation = -17265.806519 eV
Core-core repulsion = 14584.080725 eV
Total energy + Delta-G solvation = -2681.725794 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-39.71450 -36.63081 -35.27393 -33.66710 -32.84613 -30.83639 -29.92389 -26.65862
-25.76037 -23.63595 -22.38544 -21.24482 -19.25856 -18.06242 -17.48770 -16.21722
-15.38506 -14.82998 -14.04905 -13.84701 -13.49194 -13.18224 -12.97158 -12.87084
-12.75314 -12.22359 -11.76574 -11.53490 -11.32834 -11.22081 -10.99930 -10.81435
-10.62171 -10.57479 -10.35649 -10.15990 -10.06111 -9.48779 -9.01459 -8.96330
-8.02278 -7.79707 -7.15602 -4.62461 2.30569 2.38955 3.12914 3.18065
3.33839 4.04565 4.38325 4.76902 5.03894 5.20950 5.47304 5.67490
5.77111 5.81992 6.01130 6.05008 6.11877 6.18265 6.30979 6.34734
6.35328 6.48174 6.49293 6.63304 6.73753 6.76263 6.80441 6.91773
7.02774 7.23509 7.56574 7.94602 8.01771 8.45986 8.63564 8.72343
9.60371 9.78975
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.023801 B = 0.010903 C = 0.008869
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1176.155101 B = 2567.526416 C = 3156.198455
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.046 4.046
3 C 0.068 3.932
4 N -0.494 5.494
5 C 0.187 3.813
6 C -0.003 4.003
7 C -0.136 4.136
8 C -0.134 4.134
9 N -0.504 5.504
10 C 0.222 3.778
11 O -0.470 6.470
12 C -0.011 4.011
13 C -0.427 4.427
14 H 0.100 0.900
15 C 0.108 3.892
16 N -0.777 5.777
17 Si 0.923 3.077
18 H -0.287 1.287
19 H -0.277 1.277
20 H -0.242 1.242
21 H 0.058 0.942
22 H 0.047 0.953
23 H 0.048 0.952
24 H 0.060 0.940
25 H 0.075 0.925
26 H 0.078 0.922
27 H 0.049 0.951
28 H 0.047 0.953
29 H 0.060 0.940
30 H 0.047 0.953
31 H 0.048 0.952
32 H 0.060 0.940
33 H 0.372 0.628
34 H 0.289 0.711
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.192 1.311 -5.840 5.989
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.084 4.084
3 C -0.083 4.083
4 N -0.207 5.207
5 C -0.076 4.076
6 C -0.023 4.023
7 C -0.194 4.194
8 C -0.192 4.192
9 N -0.227 5.227
10 C 0.032 3.968
11 O -0.275 6.275
12 C -0.020 4.020
13 C -0.454 4.454
14 H 0.118 0.882
15 C -0.117 4.117
16 N -0.399 5.399
17 Si 0.749 3.251
18 H -0.214 1.214
19 H -0.203 1.203
20 H -0.166 1.166
21 H 0.077 0.923
22 H 0.067 0.933
23 H 0.067 0.933
24 H 0.078 0.922
25 H 0.094 0.906
26 H 0.096 0.904
27 H 0.068 0.932
28 H 0.066 0.934
29 H 0.079 0.921
30 H 0.066 0.934
31 H 0.067 0.933
32 H 0.079 0.921
33 H 0.227 0.773
34 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges -0.207 1.909 -6.403 6.685
hybrid contribution -0.053 0.196 1.174 1.192
sum -0.260 2.105 -5.229 5.642
Atomic orbital electron populations
1.21608 0.95592 1.00444 1.01885 1.20025 0.95440 0.91373 1.01567
1.21401 1.02228 0.97451 0.87220 1.67293 1.12121 1.09952 1.31330
1.21450 1.06125 0.87995 0.92030 1.19444 0.95309 0.95733 0.91856
1.21755 0.99197 0.97557 1.00875 1.21738 0.95562 1.01055 1.00878
1.66916 1.17687 1.39294 0.98780 1.19140 1.03292 0.90375 0.84012
1.84629 1.31478 1.72944 1.38476 1.19150 0.95628 0.91955 0.95230
1.19202 1.36120 0.98451 0.91633 0.88219 1.26156 0.94668 0.97056
0.93805 1.69805 1.32222 1.37312 1.00528 0.85811 0.77583 0.79971
0.81685 1.21433 1.20259 1.16647 0.92322 0.93347 0.93311 0.92163
0.90615 0.90412 0.93226 0.93421 0.92095 0.93383 0.93264 0.92106
0.77258 0.90034
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.45 9.89 37.16 0.37 -2.09 16
2 C -0.05 -0.90 5.91 -27.88 -0.16 -1.07 16
3 C 0.07 1.60 6.15 -81.50 -0.50 1.09 16
4 N -0.49 -11.54 10.20 -6.43 -0.07 -11.60 16
5 C 0.19 4.25 6.35 -156.92 -1.00 3.25 16
6 C 0.00 -0.05 3.24 -91.77 -0.30 -0.35 16
7 C -0.14 -2.26 9.08 37.16 0.34 -1.92 16
8 C -0.13 -2.16 9.08 37.16 0.34 -1.82 16
9 N -0.50 -12.12 9.76 -10.17 -0.10 -12.22 16
10 C 0.22 5.47 5.82 -15.85 -0.09 5.38 16
11 O -0.47 -10.77 9.18 -17.52 -0.16 -10.93 16
12 C -0.01 -0.28 4.85 -106.38 -0.52 -0.80 16
13 C -0.43 -10.66 8.67 -37.82 -0.33 -10.99 16
14 H 0.10 2.54 6.85 -52.49 -0.36 2.18 16
15 C 0.11 2.66 4.66 -17.33 -0.08 2.58 16
16 N -0.78 -19.21 13.93 55.55 0.77 -18.43 16
17 Si 0.92 21.54 25.35 -169.99 -4.31 17.23 16
18 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16
19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16
20 H -0.24 -6.22 5.63 56.52 0.32 -5.90 16
21 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16
22 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16
23 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16
24 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16
25 H 0.08 1.47 6.54 -51.93 -0.34 1.13 16
26 H 0.08 1.36 8.09 -51.93 -0.42 0.94 16
27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16
28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16
29 H 0.06 1.08 8.00 -51.93 -0.42 0.67 16
30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16
31 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16
32 H 0.06 1.03 8.00 -51.92 -0.42 0.62 16
33 H 0.37 7.01 9.06 45.56 0.41 7.42 16
34 H 0.29 6.54 8.30 -40.82 -0.34 6.20 16
LS Contribution 281.94 15.07 4.25 4.25
Total: -1.00 -28.19 281.94 -5.68 -33.88
By element:
Atomic # 1 Polarization: 8.69 SS G_CDS: -4.14 Total: 4.55 kcal
Atomic # 6 Polarization: -4.79 SS G_CDS: -1.93 Total: -6.73 kcal
Atomic # 7 Polarization: -42.86 SS G_CDS: 0.61 Total: -42.25 kcal
Atomic # 8 Polarization: -10.77 SS G_CDS: -0.16 Total: -10.93 kcal
Atomic # 14 Polarization: 21.54 SS G_CDS: -4.31 Total: 17.23 kcal
Total LS contribution 4.25 Total: 4.25 kcal
Total: -28.19 -5.68 -33.88 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260471377.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 7.877 kcal
(2) G-P(sol) polarization free energy of solvation -28.194 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.318 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.684 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.878 kcal
(6) G-S(sol) free energy of system = (1) + (5) -26.001 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds