Wall clock time and date at job start Mon Mar 30 2020 03:04:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.50705 * 109.46801 * 2 1
4 4 N 1.32041 * 120.58464 * 270.02694 * 3 2 1
5 5 C 1.32008 * 121.25396 * 179.97438 * 4 3 2
6 6 C 1.50696 * 118.77204 * 179.97438 * 5 4 3
7 7 C 1.52998 * 109.47223 * 119.99534 * 6 5 4
8 8 C 1.53001 * 109.47279 * 239.99986 * 6 5 4
9 9 N 1.31903 * 122.45798 * 359.97438 * 5 4 3
10 10 C 1.32534 * 120.98953 * 0.02562 * 9 5 4
11 11 O 1.35274 * 120.68868 * 180.02562 * 10 9 5
12 12 C 1.40883 * 120.57779 * 89.99858 * 3 2 1
13 13 C 1.41181 * 121.08841 * 359.75181 * 12 3 2
14 14 H 1.07999 * 119.99554 * 36.14496 * 13 12 3
15 15 C 1.39954 * 120.00003 * 216.14287 * 13 12 3
16 16 N 1.30852 * 119.99731 * 210.93999 * 15 13 12
17 17 Si 1.86802 * 119.99909 * 30.94436 * 15 13 12
18 18 H 1.48498 * 109.46917 * 95.36777 * 17 15 13
19 19 H 1.48508 * 109.46911 * 215.36289 * 17 15 13
20 20 H 1.48495 * 109.47283 * 335.36445 * 17 15 13
21 21 H 1.09000 * 109.47633 * 299.99201 * 1 2 3
22 22 H 1.08997 * 109.47824 * 60.00264 * 1 2 3
23 23 H 1.09004 * 109.46838 * 180.02562 * 1 2 3
24 24 H 1.08995 * 109.46989 * 240.00182 * 2 1 3
25 25 H 1.08992 * 109.47140 * 119.99919 * 2 1 3
26 26 H 1.08999 * 109.46782 * 359.97438 * 6 5 4
27 27 H 1.09002 * 109.47276 * 180.02562 * 7 6 5
28 28 H 1.09000 * 109.47208 * 299.99767 * 7 6 5
29 29 H 1.08999 * 109.47280 * 60.00258 * 7 6 5
30 30 H 1.08994 * 109.47353 * 59.99157 * 8 6 5
31 31 H 1.08992 * 109.47436 * 180.02562 * 8 6 5
32 32 H 1.09010 * 109.46862 * 299.99967 * 8 6 5
33 33 H 0.96704 * 113.99965 * 274.67463 * 11 10 9
34 34 H 0.97006 * 119.99908 * 179.97438 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4209 0.0000
4 7 2.2557 2.0545 -1.1367
5 6 2.6951 3.2992 -1.1521
6 6 2.9317 3.9685 -2.4814
7 6 2.0455 5.2107 -2.5919
8 6 4.4015 4.3791 -2.5913
9 7 2.9349 3.9790 -0.0475
10 6 2.7425 3.4334 1.1449
11 8 2.9899 4.1363 2.2738
12 6 2.2711 2.0966 1.2129
13 6 2.0428 1.4666 2.4556
14 1 2.2518 0.4136 2.5736
15 6 1.5457 2.2067 3.5345
16 7 1.8758 1.8815 4.7582
17 14 0.4111 3.6585 3.2274
18 1 -1.0015 3.2167 3.3478
19 1 0.6845 4.7208 4.2286
20 1 0.6483 4.1921 1.8621
21 1 -0.3634 0.5137 0.8900
22 1 -0.3634 0.5138 -0.8899
23 1 -0.3633 -1.0277 0.0005
24 1 1.8933 -0.5138 -0.8900
25 1 1.8933 -0.5138 0.8899
26 1 2.6875 3.2748 -3.2860
27 1 2.2162 5.6946 -3.5536
28 1 0.9984 4.9182 -2.5137
29 1 2.2900 5.9043 -1.7874
30 1 5.0328 3.4941 -2.5126
31 1 4.5725 4.8635 -3.5526
32 1 4.6461 5.0726 -1.7867
33 1 3.9123 4.1049 2.5626
34 1 1.5316 2.3947 5.5060
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260471377.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:04:51
Heat of formation + Delta-G solvation = -46.236826 kcal
Electronic energy + Delta-G solvation = -17266.684005 eV
Core-core repulsion = 14584.080725 eV
Total energy + Delta-G solvation = -2682.603280 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-41.53013 -38.41355 -36.90844 -35.44126 -34.47548 -32.63753 -31.65679 -27.95824
-27.51918 -25.31968 -24.13127 -22.92406 -20.85525 -19.91362 -19.31499 -18.02117
-17.22751 -16.56468 -15.75011 -15.32961 -15.04926 -14.84558 -14.63103 -14.55968
-14.50931 -13.75671 -13.26119 -13.16839 -12.99685 -12.81927 -12.65688 -12.45698
-12.16427 -12.04621 -11.94031 -11.78055 -11.67037 -11.32092 -10.83364 -10.79160
-9.88123 -9.64822 -9.03164 -6.51384 0.45102 0.53453 1.26592 1.30207
1.43740 2.17024 2.51842 3.00282 3.34329 3.49196 3.89625 4.22008
4.30017 4.37389 4.51409 4.53545 4.64817 4.75555 4.84418 4.85912
4.95142 5.02209 5.04628 5.07311 5.18934 5.27073 5.38190 5.41566
5.46874 5.57768 5.78711 6.10504 6.14006 6.58700 6.79196 6.94949
7.75842 7.97046
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.023801 B = 0.010903 C = 0.008869
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1176.155101 B = 2567.526416 C = 3156.198455
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C -0.046 4.046
3 C 0.067 3.933
4 N -0.506 5.506
5 C 0.190 3.810
6 C -0.009 4.009
7 C -0.129 4.129
8 C -0.126 4.126
9 N -0.519 5.519
10 C 0.212 3.788
11 O -0.477 6.477
12 C -0.031 4.031
13 C -0.445 4.445
14 H 0.087 0.913
15 C 0.095 3.905
16 N -0.800 5.800
17 Si 0.961 3.039
18 H -0.279 1.279
19 H -0.270 1.270
20 H -0.277 1.277
21 H 0.038 0.962
22 H 0.046 0.954
23 H 0.082 0.918
24 H 0.077 0.923
25 H 0.074 0.926
26 H 0.089 0.911
27 H 0.088 0.912
28 H 0.035 0.965
29 H 0.044 0.956
30 H 0.041 0.959
31 H 0.086 0.914
32 H 0.046 0.954
33 H 0.389 0.611
34 H 0.298 0.702
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.090 1.532 -7.434 7.590
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C -0.084 4.084
3 C -0.084 4.084
4 N -0.220 5.220
5 C -0.075 4.075
6 C -0.029 4.029
7 C -0.187 4.187
8 C -0.184 4.184
9 N -0.243 5.243
10 C 0.023 3.977
11 O -0.284 6.284
12 C -0.039 4.039
13 C -0.473 4.473
14 H 0.105 0.895
15 C -0.128 4.128
16 N -0.423 5.423
17 Si 0.788 3.212
18 H -0.206 1.206
19 H -0.195 1.195
20 H -0.203 1.203
21 H 0.057 0.943
22 H 0.065 0.935
23 H 0.101 0.899
24 H 0.096 0.904
25 H 0.093 0.907
26 H 0.108 0.892
27 H 0.107 0.893
28 H 0.054 0.946
29 H 0.063 0.937
30 H 0.060 0.940
31 H 0.104 0.896
32 H 0.065 0.935
33 H 0.246 0.754
34 H 0.109 0.891
Dipole moment (debyes) X Y Z Total
from point charges -0.305 2.126 -7.958 8.242
hybrid contribution 0.032 0.162 1.495 1.504
sum -0.273 2.287 -6.463 6.861
Atomic orbital electron populations
1.21558 0.94072 1.02409 1.00806 1.20132 0.96654 0.89295 1.02324
1.22067 1.00565 0.98889 0.86903 1.67478 1.13026 1.10408 1.31107
1.22544 1.03448 0.87946 0.93519 1.19708 0.97229 0.96391 0.89586
1.21702 0.98015 0.96541 1.02434 1.21672 0.93601 1.00697 1.02441
1.67051 1.18631 1.39630 0.98956 1.19404 1.03122 0.90601 0.84612
1.84538 1.33012 1.72714 1.38157 1.19349 0.96364 0.92416 0.95797
1.19067 1.38100 0.97940 0.92203 0.89488 1.26353 0.94915 0.97766
0.93735 1.69785 1.33190 1.38396 1.00905 0.85286 0.77406 0.78989
0.79506 1.20584 1.19474 1.20321 0.94266 0.93452 0.89875 0.90397
0.90742 0.89229 0.89329 0.94557 0.93723 0.94021 0.89562 0.93458
0.75369 0.89088
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -4.46 9.89 71.98 0.71 -3.75 16
2 C -0.05 -1.76 5.91 29.85 0.18 -1.58 16
3 C 0.07 3.10 6.15 43.18 0.27 3.36 16
4 N -0.51 -23.17 10.20 -174.25 -1.78 -24.95 16
5 C 0.19 8.42 6.35 138.65 0.88 9.30 16
6 C -0.01 -0.30 3.24 -11.54 -0.04 -0.34 16
7 C -0.13 -3.98 9.08 71.98 0.65 -3.32 16
8 C -0.13 -3.71 9.08 71.98 0.65 -3.06 16
9 N -0.52 -24.83 9.76 -299.04 -2.92 -27.74 16
10 C 0.21 10.48 5.82 85.50 0.50 10.98 16
11 O -0.48 -21.95 9.18 -85.59 -0.79 -22.73 16
12 C -0.03 -1.56 4.85 -21.00 -0.10 -1.67 16
13 C -0.45 -22.55 8.67 23.41 0.20 -22.35 16
14 H 0.09 4.53 6.85 -2.91 -0.02 4.51 16
15 C 0.09 4.70 4.66 85.25 0.40 5.10 16
16 N -0.80 -39.57 13.93 21.83 0.30 -39.27 16
17 Si 0.96 44.47 25.35 68.60 1.74 46.21 16
18 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16
19 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16
20 H -0.28 -14.38 5.63 99.48 0.56 -13.82 16
21 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16
22 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16
23 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16
24 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16
25 H 0.07 2.86 6.54 -2.39 -0.02 2.84 16
26 H 0.09 2.87 8.09 -2.39 -0.02 2.85 16
27 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16
28 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16
29 H 0.04 1.51 8.00 -2.39 -0.02 1.49 16
30 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16
31 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16
32 H 0.05 1.51 8.00 -2.38 -0.02 1.49 16
33 H 0.39 14.70 9.06 -74.05 -0.67 14.02 16
34 H 0.30 13.40 8.30 -92.70 -0.77 12.63 16
Total: -1.00 -59.59 281.94 1.15 -58.44
By element:
Atomic # 1 Polarization: 17.08 SS G_CDS: 0.29 Total: 17.37 kcal
Atomic # 6 Polarization: -11.63 SS G_CDS: 4.30 Total: -7.33 kcal
Atomic # 7 Polarization: -87.57 SS G_CDS: -4.39 Total: -91.96 kcal
Atomic # 8 Polarization: -21.95 SS G_CDS: -0.79 Total: -22.73 kcal
Atomic # 14 Polarization: 44.47 SS G_CDS: 1.74 Total: 46.21 kcal
Total: -59.59 1.15 -58.44 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260471377.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 12.206 kcal
(2) G-P(sol) polarization free energy of solvation -59.590 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.385 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.148 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.443 kcal
(6) G-S(sol) free energy of system = (1) + (5) -46.237 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds