Wall clock time and date at job start Mon Mar 30 2020 03:37:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09006 * 109.42790 * 2 1
4 4 C 1.53025 * 109.43104 * 240.10164 * 2 1 3
5 5 C 1.53371 * 109.70287 * 168.27349 * 4 2 1
6 6 C 1.50822 * 108.27134 * 50.66114 * 5 4 2
7 7 N 1.30125 * 128.30659 * 163.10979 * 6 5 4
8 8 N 1.40315 * 108.12525 * 180.32295 * 7 6 5
9 9 C 1.46503 * 126.00357 * 179.97438 * 8 7 6
10 10 C 1.35195 * 107.98912 * 359.96249 * 8 7 6
11 11 C 1.34569 * 107.62284 * 359.95863 * 10 8 7
12 12 C 1.50875 * 128.32861 * 180.09699 * 11 10 8
13 13 O 1.42902 * 109.72083 * 283.15616 * 12 11 10
14 14 C 1.50702 * 109.75424 * 43.78696 * 12 11 10
15 15 H 1.08008 * 119.99606 * 243.19496 * 14 12 11
16 16 C 1.37875 * 120.00295 * 63.20379 * 14 12 11
17 17 N 1.31506 * 120.00194 * 185.86603 * 16 14 12
18 18 Si 1.86796 * 119.99707 * 5.85866 * 16 14 12
19 19 H 1.48500 * 109.47419 * 84.40867 * 18 16 14
20 20 H 1.48496 * 109.47351 * 204.40848 * 18 16 14
21 21 H 1.48502 * 109.47683 * 324.40810 * 18 16 14
22 22 H 1.08997 * 109.46975 * 179.90594 * 1 2 3
23 23 H 1.09003 * 109.47135 * 299.89951 * 1 2 3
24 24 H 1.09001 * 109.47064 * 59.89889 * 1 2 3
25 25 H 1.09003 * 109.41830 * 288.32954 * 4 2 1
26 26 H 1.09001 * 109.42541 * 48.21316 * 4 2 1
27 27 H 1.09001 * 109.71788 * 170.29406 * 5 4 2
28 28 H 1.08994 * 109.71433 * 290.94102 * 5 4 2
29 29 H 1.08990 * 109.47322 * 269.98008 * 9 8 7
30 30 H 1.09000 * 109.46600 * 29.98393 * 9 8 7
31 31 H 1.09002 * 109.46762 * 149.97719 * 9 8 7
32 32 H 1.07999 * 126.18908 * 179.97438 * 10 8 7
33 33 H 0.96694 * 113.99786 * 56.28214 * 13 12 11
34 34 H 0.97000 * 120.00326 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8926 1.0280 0.0000
4 6 2.0391 -0.7193 -1.2510
5 6 3.5444 -0.4735 -1.4123
6 6 4.2190 -0.7952 -0.1023
7 7 5.4819 -1.0146 0.1221
8 7 5.6423 -1.2804 1.4904
9 6 6.9066 -1.5808 2.1669
10 6 4.4253 -1.2103 2.0749
11 6 3.5295 -0.9113 1.1162
12 6 2.0393 -0.7206 1.2547
13 8 1.3993 -1.9927 1.3732
14 6 1.7437 0.1129 2.4750
15 1 1.1790 -0.3091 3.2933
16 6 2.1938 1.4141 2.5467
17 7 2.0372 2.1039 3.6554
18 14 3.0265 2.1971 1.0693
19 1 1.9948 2.7418 0.1506
20 1 3.9130 3.2973 1.5261
21 1 3.8338 1.1747 0.3564
22 1 -0.3633 -1.0276 -0.0017
23 1 -0.3633 0.5123 0.8909
24 1 -0.3633 0.5154 -0.8891
25 1 1.8548 -1.7893 -1.1541
26 1 1.5137 -0.3389 -2.1270
27 1 3.9404 -1.1187 -2.1966
28 1 3.7208 0.5706 -1.6702
29 1 7.0771 -2.6573 2.1571
30 1 7.7239 -1.0787 1.6492
31 1 6.8594 -1.2297 3.1978
32 1 4.2107 -1.3659 3.1219
33 1 1.7309 -2.5333 2.1031
34 1 2.3535 3.0195 3.7058
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260535278.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:37:30
Heat of formation + Delta-G solvation = 43.047731 kcal
Electronic energy + Delta-G solvation = -18049.849710 eV
Core-core repulsion = 15371.118098 eV
Total energy + Delta-G solvation = -2678.731611 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-40.90487 -37.50259 -34.40783 -32.65949 -32.26278 -30.23349 -29.24422 -27.17598
-25.06916 -23.87567 -21.76499 -20.32533 -19.81711 -18.53958 -16.69618 -16.39984
-15.27294 -14.93361 -14.43280 -14.13455 -13.79796 -13.31733 -13.13330 -12.60952
-12.47328 -12.21885 -12.04118 -11.87658 -11.36662 -11.26562 -10.99057 -10.76932
-10.42959 -10.25910 -10.04078 -9.78104 -9.50808 -8.94321 -8.61122 -8.43190
-8.36824 -7.39600 -6.13607 -4.15416 2.57154 3.11289 3.28734 3.39917
3.49277 3.64988 4.43601 4.90543 5.16398 5.33933 5.41010 5.44468
5.55525 5.61238 5.67734 5.79253 5.99539 6.06362 6.19930 6.30443
6.38257 6.49998 6.63655 6.65167 6.73196 6.89041 7.10317 7.27279
7.32722 7.45417 7.64189 7.76134 8.37997 8.48462 8.73319 8.99861
9.53765 10.97718
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.021155 B = 0.015031 C = 0.012342
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1323.263424 B = 1862.375057 C = 2268.049899
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C -0.085 4.085
3 H 0.064 0.936
4 C -0.112 4.112
5 C -0.039 4.039
6 C 0.091 3.909
7 N -0.315 5.315
8 N -0.400 5.400
9 C 0.112 3.888
10 C 0.070 3.930
11 C -0.228 4.228
12 C 0.306 3.694
13 O -0.564 6.564
14 C -0.534 4.534
15 H 0.080 0.920
16 C 0.086 3.914
17 N -0.895 5.895
18 Si 0.849 3.151
19 H -0.280 1.280
20 H -0.309 1.309
21 H -0.218 1.218
22 H 0.056 0.944
23 H 0.065 0.935
24 H 0.031 0.969
25 H 0.072 0.928
26 H 0.059 0.941
27 H 0.072 0.928
28 H 0.073 0.927
29 H 0.063 0.937
30 H 0.078 0.922
31 H 0.081 0.919
32 H 0.171 0.829
33 H 0.361 0.639
34 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.931 -6.183 -5.372 9.560
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C -0.103 4.103
3 H 0.081 0.919
4 C -0.150 4.150
5 C -0.078 4.078
6 C -0.077 4.077
7 N -0.137 5.137
8 N -0.184 5.184
9 C -0.030 4.030
10 C -0.072 4.072
11 C -0.240 4.240
12 C 0.265 3.735
13 O -0.368 6.368
14 C -0.571 4.571
15 H 0.098 0.902
16 C -0.117 4.117
17 N -0.531 5.531
18 Si 0.681 3.319
19 H -0.208 1.208
20 H -0.238 1.238
21 H -0.142 1.142
22 H 0.075 0.925
23 H 0.084 0.916
24 H 0.050 0.950
25 H 0.090 0.910
26 H 0.078 0.922
27 H 0.090 0.910
28 H 0.091 0.909
29 H 0.082 0.918
30 H 0.097 0.903
31 H 0.099 0.901
32 H 0.188 0.812
33 H 0.207 0.793
34 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges 5.931 -5.906 -6.195 10.414
hybrid contribution 0.199 0.724 0.416 0.858
sum 6.130 -5.183 -5.779 9.891
Atomic orbital electron populations
1.21539 0.94826 1.01504 1.00534 1.21487 0.96711 0.98237 0.93846
0.91871 1.21683 0.93234 1.01948 0.98165 1.20145 0.95065 1.01194
0.91367 1.22111 0.90879 0.97973 0.96771 1.76810 1.18447 1.25200
0.93217 1.48365 1.06529 1.57888 1.05638 1.21615 0.83622 1.01029
0.96754 1.21969 0.84103 1.01739 0.99387 1.21340 1.00137 1.11329
0.91147 1.17425 0.81318 0.81576 0.93209 1.86316 1.65257 1.30348
1.54873 1.21408 1.35941 0.97383 1.02406 0.90240 1.24835 0.94449
0.97016 0.95384 1.69903 1.46636 1.10535 1.26063 0.87630 0.80285
0.79925 0.84092 1.20786 1.23785 1.14221 0.92460 0.91581 0.94990
0.90976 0.92220 0.90953 0.90865 0.91807 0.90288 0.90060 0.81171
0.79347 0.92683
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.59 8.77 37.16 0.33 -2.26 16
2 C -0.08 -1.83 1.54 -90.40 -0.14 -1.97 16
3 H 0.06 1.48 2.11 -51.93 -0.11 1.37 16
4 C -0.11 -2.06 5.17 -26.53 -0.14 -2.20 16
5 C -0.04 -0.71 5.84 -27.63 -0.16 -0.87 16
6 C 0.09 1.92 5.12 -82.41 -0.42 1.50 16
7 N -0.31 -6.58 12.56 33.72 0.42 -6.15 16
8 N -0.40 -7.51 4.02 -68.30 -0.27 -7.78 16
9 C 0.11 1.46 11.47 59.85 0.69 2.14 16
10 C 0.07 1.41 11.01 -17.37 -0.19 1.22 16
11 C -0.23 -4.98 3.02 -104.99 -0.32 -5.30 16
12 C 0.31 6.96 0.52 -92.64 -0.05 6.92 16
13 O -0.56 -11.98 11.56 -35.23 -0.41 -12.39 16
14 C -0.53 -14.18 7.87 -34.44 -0.27 -14.45 16
15 H 0.08 2.31 8.06 -52.48 -0.42 1.88 16
16 C 0.09 2.41 5.42 -17.82 -0.10 2.31 16
17 N -0.89 -26.71 13.96 55.43 0.77 -25.94 16
18 Si 0.85 21.42 23.47 -169.99 -3.99 17.43 16
19 H -0.28 -6.96 6.79 56.52 0.38 -6.58 16
20 H -0.31 -8.18 7.11 56.52 0.40 -7.78 16
21 H -0.22 -5.21 2.42 56.52 0.14 -5.07 16
22 H 0.06 1.12 7.49 -51.93 -0.39 0.73 16
23 H 0.07 1.48 7.55 -51.93 -0.39 1.09 16
24 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16
25 H 0.07 1.33 7.74 -51.93 -0.40 0.92 16
26 H 0.06 0.94 8.09 -51.93 -0.42 0.52 16
27 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16
28 H 0.07 1.32 7.65 -51.93 -0.40 0.92 16
29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16
30 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16
31 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16
32 H 0.17 3.17 8.06 -52.49 -0.42 2.75 16
33 H 0.36 6.65 9.03 45.56 0.41 7.06 16
34 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16
LS Contribution 262.43 15.07 3.95 3.95
Total: -1.00 -32.27 262.43 -4.37 -36.63
By element:
Atomic # 1 Polarization: 11.27 SS G_CDS: -4.08 Total: 7.20 kcal
Atomic # 6 Polarization: -12.19 SS G_CDS: -0.77 Total: -12.96 kcal
Atomic # 7 Polarization: -40.80 SS G_CDS: 0.92 Total: -39.87 kcal
Atomic # 8 Polarization: -11.98 SS G_CDS: -0.41 Total: -12.39 kcal
Atomic # 14 Polarization: 21.42 SS G_CDS: -3.99 Total: 17.43 kcal
Total LS contribution 3.95 Total: 3.95 kcal
Total: -32.27 -4.37 -36.63 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260535278.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 79.681 kcal
(2) G-P(sol) polarization free energy of solvation -32.267 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.413 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.366 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.633 kcal
(6) G-S(sol) free energy of system = (1) + (5) 43.048 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds