Wall clock time and date at job start Mon Mar 30 2020 03:37:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09006 * 109.42790 * 2 1
4 4 C 1.53025 * 109.43104 * 240.10164 * 2 1 3
5 5 C 1.53371 * 109.70287 * 168.27349 * 4 2 1
6 6 C 1.50822 * 108.27134 * 50.66114 * 5 4 2
7 7 N 1.30125 * 128.30659 * 163.10979 * 6 5 4
8 8 N 1.40315 * 108.12525 * 180.32295 * 7 6 5
9 9 C 1.46503 * 126.00357 * 179.97438 * 8 7 6
10 10 C 1.35195 * 107.98912 * 359.96249 * 8 7 6
11 11 C 1.34569 * 107.62284 * 359.95863 * 10 8 7
12 12 C 1.50875 * 128.32861 * 180.09699 * 11 10 8
13 13 O 1.42902 * 109.72083 * 283.15616 * 12 11 10
14 14 C 1.50702 * 109.75424 * 43.78696 * 12 11 10
15 15 H 1.08008 * 119.99606 * 243.19496 * 14 12 11
16 16 C 1.37875 * 120.00295 * 63.20379 * 14 12 11
17 17 N 1.31506 * 120.00194 * 185.86603 * 16 14 12
18 18 Si 1.86796 * 119.99707 * 5.85866 * 16 14 12
19 19 H 1.48500 * 109.47419 * 84.40867 * 18 16 14
20 20 H 1.48496 * 109.47351 * 204.40848 * 18 16 14
21 21 H 1.48502 * 109.47683 * 324.40810 * 18 16 14
22 22 H 1.08997 * 109.46975 * 179.90594 * 1 2 3
23 23 H 1.09003 * 109.47135 * 299.89951 * 1 2 3
24 24 H 1.09001 * 109.47064 * 59.89889 * 1 2 3
25 25 H 1.09003 * 109.41830 * 288.32954 * 4 2 1
26 26 H 1.09001 * 109.42541 * 48.21316 * 4 2 1
27 27 H 1.09001 * 109.71788 * 170.29406 * 5 4 2
28 28 H 1.08994 * 109.71433 * 290.94102 * 5 4 2
29 29 H 1.08990 * 109.47322 * 269.98008 * 9 8 7
30 30 H 1.09000 * 109.46600 * 29.98393 * 9 8 7
31 31 H 1.09002 * 109.46762 * 149.97719 * 9 8 7
32 32 H 1.07999 * 126.18908 * 179.97438 * 10 8 7
33 33 H 0.96694 * 113.99786 * 56.28214 * 13 12 11
34 34 H 0.97000 * 120.00326 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8926 1.0280 0.0000
4 6 2.0391 -0.7193 -1.2510
5 6 3.5444 -0.4735 -1.4123
6 6 4.2190 -0.7952 -0.1023
7 7 5.4819 -1.0146 0.1221
8 7 5.6423 -1.2804 1.4904
9 6 6.9066 -1.5808 2.1669
10 6 4.4253 -1.2103 2.0749
11 6 3.5295 -0.9113 1.1162
12 6 2.0393 -0.7206 1.2547
13 8 1.3993 -1.9927 1.3732
14 6 1.7437 0.1129 2.4750
15 1 1.1790 -0.3091 3.2933
16 6 2.1938 1.4141 2.5467
17 7 2.0372 2.1039 3.6554
18 14 3.0265 2.1971 1.0693
19 1 1.9948 2.7418 0.1506
20 1 3.9130 3.2973 1.5261
21 1 3.8338 1.1747 0.3564
22 1 -0.3633 -1.0276 -0.0017
23 1 -0.3633 0.5123 0.8909
24 1 -0.3633 0.5154 -0.8891
25 1 1.8548 -1.7893 -1.1541
26 1 1.5137 -0.3389 -2.1270
27 1 3.9404 -1.1187 -2.1966
28 1 3.7208 0.5706 -1.6702
29 1 7.0771 -2.6573 2.1571
30 1 7.7239 -1.0787 1.6492
31 1 6.8594 -1.2297 3.1978
32 1 4.2107 -1.3659 3.1219
33 1 1.7309 -2.5333 2.1031
34 1 2.3535 3.0195 3.7058
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260535278.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:37:30
Heat of formation + Delta-G solvation = 18.282079 kcal
Electronic energy + Delta-G solvation = -18050.923629 eV
Core-core repulsion = 15371.118098 eV
Total energy + Delta-G solvation = -2679.805531 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-42.45224 -39.13840 -35.99219 -34.63111 -33.79358 -31.85093 -30.77766 -28.84524
-26.60969 -25.55428 -23.31475 -22.00994 -21.43396 -20.11571 -18.70578 -17.91395
-17.02139 -16.44897 -16.01374 -15.82142 -15.26732 -14.88111 -14.76275 -14.33969
-14.21372 -13.62634 -13.39865 -13.36657 -13.03952 -12.88498 -12.70275 -12.31291
-12.20919 -11.97813 -11.81540 -11.47242 -11.23458 -10.72692 -10.56639 -10.21982
-9.99429 -8.98504 -8.31054 -6.33382 0.99683 1.27260 1.40459 1.53161
1.78418 1.97447 2.36456 3.07279 3.54881 3.83296 4.04771 4.11766
4.20142 4.29581 4.45395 4.47213 4.59545 4.67225 4.69686 4.82894
4.88241 4.96656 5.07782 5.14067 5.20794 5.29418 5.47207 5.59273
5.66871 5.75379 5.89098 6.27243 6.33785 6.66571 6.89520 7.16399
7.46002 8.83524
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.021155 B = 0.015031 C = 0.012342
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1323.263424 B = 1862.375057 C = 2268.049899
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.124 4.124
2 C -0.094 4.094
3 H 0.047 0.953
4 C -0.103 4.103
5 C -0.042 4.042
6 C 0.077 3.923
7 N -0.328 5.328
8 N -0.395 5.395
9 C 0.100 3.900
10 C 0.067 3.933
11 C -0.255 4.255
12 C 0.309 3.691
13 O -0.566 6.566
14 C -0.519 4.519
15 H 0.042 0.958
16 C 0.041 3.959
17 N -0.942 5.942
18 Si 0.897 3.103
19 H -0.274 1.274
20 H -0.330 1.330
21 H -0.193 1.193
22 H 0.062 0.938
23 H 0.033 0.967
24 H 0.060 0.940
25 H 0.072 0.928
26 H 0.091 0.909
27 H 0.100 0.900
28 H 0.078 0.922
29 H 0.089 0.911
30 H 0.090 0.910
31 H 0.099 0.901
32 H 0.178 0.822
33 H 0.372 0.628
34 H 0.260 0.740
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.071 -7.253 -7.476 12.056
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.181 4.181
2 C -0.112 4.112
3 H 0.065 0.935
4 C -0.141 4.141
5 C -0.081 4.081
6 C -0.090 4.090
7 N -0.150 5.150
8 N -0.179 5.179
9 C -0.040 4.040
10 C -0.077 4.077
11 C -0.267 4.267
12 C 0.268 3.732
13 O -0.371 6.371
14 C -0.557 4.557
15 H 0.060 0.940
16 C -0.157 4.157
17 N -0.582 5.582
18 Si 0.728 3.272
19 H -0.202 1.202
20 H -0.261 1.261
21 H -0.116 1.116
22 H 0.081 0.919
23 H 0.052 0.948
24 H 0.079 0.921
25 H 0.091 0.909
26 H 0.110 0.890
27 H 0.118 0.882
28 H 0.096 0.904
29 H 0.107 0.893
30 H 0.108 0.892
31 H 0.118 0.882
32 H 0.195 0.805
33 H 0.219 0.781
34 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges 7.087 -7.018 -8.319 12.987
hybrid contribution -0.155 0.931 1.199 1.526
sum 6.933 -6.087 -7.119 11.653
Atomic orbital electron populations
1.21502 0.94328 1.01841 1.00407 1.21499 0.97295 0.97407 0.95002
0.93534 1.21619 0.93571 1.01545 0.97379 1.20302 0.94730 1.02137
0.90925 1.22516 0.90854 0.98123 0.97516 1.76764 1.18421 1.25498
0.94347 1.48777 1.07633 1.56314 1.05148 1.22061 0.81562 1.02990
0.97416 1.22162 0.84851 1.01042 0.99634 1.21224 0.99487 1.13562
0.92415 1.17238 0.82557 0.81392 0.92049 1.86279 1.65486 1.29888
1.55442 1.21641 1.33764 0.97503 1.02833 0.94025 1.25413 0.95446
0.97651 0.97212 1.70034 1.49167 1.10837 1.28197 0.86920 0.79555
0.78869 0.81863 1.20165 1.26116 1.11585 0.91868 0.94763 0.92071
0.90934 0.89037 0.88188 0.90359 0.89279 0.89167 0.88210 0.80464
0.78136 0.93059
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -4.83 8.77 71.98 0.63 -4.20 16
2 C -0.09 -3.87 1.54 -10.65 -0.02 -3.89 16
3 H 0.05 2.09 2.11 -2.38 -0.01 2.09 16
4 C -0.10 -3.40 5.17 30.73 0.16 -3.24 16
5 C -0.04 -1.38 5.84 30.01 0.18 -1.21 16
6 C 0.08 3.05 5.12 43.40 0.22 3.27 16
7 N -0.33 -12.74 12.56 -47.24 -0.59 -13.33 16
8 N -0.39 -13.81 4.02 -369.98 -1.49 -15.30 16
9 C 0.10 2.28 11.47 127.77 1.47 3.75 16
10 C 0.07 2.60 11.01 83.33 0.92 3.52 16
11 C -0.26 -10.71 3.02 -20.10 -0.06 -10.77 16
12 C 0.31 13.79 0.52 -12.10 -0.01 13.78 16
13 O -0.57 -23.48 11.56 -148.98 -1.72 -25.21 16
14 C -0.52 -28.09 7.87 25.60 0.20 -27.88 16
15 H 0.04 2.51 8.06 -2.91 -0.02 2.49 16
16 C 0.04 2.33 5.42 84.66 0.46 2.79 16
17 N -0.94 -58.12 13.96 21.45 0.30 -57.82 16
18 Si 0.90 44.43 23.47 68.60 1.61 46.04 16
19 H -0.27 -13.15 6.79 99.48 0.68 -12.48 16
20 H -0.33 -17.39 7.11 99.48 0.71 -16.68 16
21 H -0.19 -8.77 2.42 99.48 0.24 -8.53 16
22 H 0.06 2.36 7.49 -2.39 -0.02 2.34 16
23 H 0.03 1.51 7.55 -2.39 -0.02 1.50 16
24 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16
25 H 0.07 2.40 7.74 -2.39 -0.02 2.38 16
26 H 0.09 2.44 8.09 -2.39 -0.02 2.42 16
27 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16
28 H 0.08 2.50 7.65 -2.39 -0.02 2.48 16
29 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16
30 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16
31 H 0.10 1.92 8.14 -2.39 -0.02 1.91 16
32 H 0.18 6.46 8.06 -2.91 -0.02 6.44 16
33 H 0.37 13.47 9.03 -74.06 -0.67 12.80 16
34 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16
Total: -1.00 -69.87 262.43 2.20 -67.67
By element:
Atomic # 1 Polarization: 22.08 SS G_CDS: -0.06 Total: 22.02 kcal
Atomic # 6 Polarization: -28.22 SS G_CDS: 4.15 Total: -24.08 kcal
Atomic # 7 Polarization: -84.67 SS G_CDS: -1.78 Total: -86.45 kcal
Atomic # 8 Polarization: -23.48 SS G_CDS: -1.72 Total: -25.21 kcal
Atomic # 14 Polarization: 44.43 SS G_CDS: 1.61 Total: 46.04 kcal
Total: -69.87 2.20 -67.67 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260535278.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 85.956 kcal
(2) G-P(sol) polarization free energy of solvation -69.870 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.086 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.196 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.674 kcal
(6) G-S(sol) free energy of system = (1) + (5) 18.282 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds