Wall clock time and date at job start Mon Mar 30 2020 03:12:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.52995 * 109.46853 * 2 1
4 4 C 1.52998 * 109.46747 * 119.99305 * 2 1 3
5 5 C 1.50703 * 109.46919 * 174.99765 * 4 2 1
6 6 N 1.32524 * 120.40666 * 90.00383 * 5 4 2
7 7 C 1.31753 * 120.96418 * 179.97438 * 6 5 4
8 8 N 1.31793 * 121.81528 * 359.97438 * 7 6 5
9 9 C 1.32792 * 120.71795 * 359.97438 * 8 7 6
10 10 O 1.35520 * 120.51527 * 180.02562 * 9 8 7
11 11 C 1.38188 * 120.41420 * 269.98005 * 5 4 2
12 12 C 1.50697 * 120.82341 * 0.02562 * 11 5 4
13 13 C 1.50703 * 109.47002 * 90.00196 * 12 11 5
14 14 H 1.07998 * 120.00096 * 359.97438 * 13 12 11
15 15 C 1.37881 * 119.99831 * 179.97438 * 13 12 11
16 16 N 1.31509 * 119.99805 * 0.02562 * 15 13 12
17 17 Si 1.86794 * 119.99903 * 179.97438 * 15 13 12
18 18 H 1.48502 * 109.47419 * 60.00048 * 17 15 13
19 19 H 1.48505 * 109.47147 * 180.02562 * 17 15 13
20 20 H 1.48500 * 109.47290 * 299.99994 * 17 15 13
21 21 H 1.09004 * 109.47564 * 300.00324 * 1 2 3
22 22 H 1.09002 * 109.47517 * 60.00344 * 1 2 3
23 23 H 1.09001 * 109.47410 * 180.02562 * 1 2 3
24 24 H 1.08991 * 109.47341 * 239.99380 * 2 1 3
25 25 H 1.09006 * 109.47297 * 299.99361 * 3 2 1
26 26 H 1.08996 * 109.48055 * 59.99829 * 3 2 1
27 27 H 1.09000 * 109.47017 * 180.02562 * 3 2 1
28 28 H 1.09005 * 109.46908 * 55.00595 * 4 2 1
29 29 H 1.08999 * 109.47900 * 295.00087 * 4 2 1
30 30 H 1.08007 * 119.09428 * 180.02562 * 7 6 5
31 31 H 0.96697 * 114.00017 * 269.98134 * 10 9 8
32 32 H 1.08996 * 109.47051 * 209.99530 * 12 11 5
33 33 H 1.08996 * 109.47478 * 329.99515 * 12 11 5
34 34 H 0.97009 * 120.00019 * 180.02562 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 2.0399 -0.7211 1.2493
5 6 3.5418 -0.8293 1.1890
6 7 4.3043 0.1252 1.7026
7 6 5.6183 0.0416 1.6564
8 7 6.2301 -0.9861 1.1027
9 6 5.5338 -1.9822 0.5677
10 8 6.1671 -3.0373 -0.0001
11 6 4.1410 -1.9253 0.5979
12 6 3.3098 -3.0321 0.0022
13 6 3.0316 -2.7271 -1.4472
14 1 3.4178 -1.8220 -1.8923
15 6 2.2841 -3.6035 -2.2050
16 7 1.8135 -4.7053 -1.6628
17 14 1.9387 -3.2250 -4.0013
18 1 3.2223 -3.1167 -4.7401
19 1 1.1196 -4.3158 -4.5883
20 1 1.1990 -1.9414 -4.1034
21 1 -0.3634 0.5139 0.8900
22 1 -0.3634 0.5138 -0.8900
23 1 -0.3634 -1.0277 0.0005
24 1 1.8933 -0.5139 -0.8898
25 1 1.6766 1.9563 -0.8901
26 1 1.6766 1.9564 0.8899
27 1 3.1299 1.4425 -0.0005
28 1 1.6053 -1.7197 1.2953
29 1 1.7516 -0.1582 2.1371
30 1 6.2106 0.8368 2.0848
31 1 6.3499 -2.9252 -0.9430
32 1 3.8521 -3.9746 0.0774
33 1 2.3675 -3.1109 0.5443
34 1 1.2878 -5.3221 -2.1960
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260593194.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:12:27
Heat of formation + Delta-G solvation = -20.398988 kcal
Electronic energy + Delta-G solvation = -17188.145817 eV
Core-core repulsion = 14506.662949 eV
Total energy + Delta-G solvation = -2681.482868 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-40.66458 -37.13053 -36.09378 -33.68875 -32.47077 -31.51886 -28.00209 -26.81757
-26.63632 -24.08966 -22.31241 -21.36457 -19.65337 -18.09288 -17.34481 -16.53575
-15.63887 -14.79978 -14.46401 -14.41246 -13.90506 -13.39653 -13.31214 -12.89033
-12.35616 -12.05744 -11.87697 -11.66961 -11.51815 -11.19087 -11.04270 -10.81655
-10.62675 -10.48916 -10.41606 -10.04070 -9.76246 -9.58956 -9.44035 -8.72727
-8.46520 -8.25692 -6.16943 -4.21912 1.51553 1.60875 3.22048 3.28183
3.30030 3.95445 4.27823 4.38046 4.57496 5.00284 5.16944 5.42519
5.44605 5.51494 5.62106 5.75872 5.99767 6.08245 6.18579 6.24597
6.26812 6.28548 6.35670 6.47899 6.59673 6.76791 6.92703 7.02780
7.41055 7.52678 7.58094 7.76688 8.01730 8.13089 8.63745 8.80492
9.41825 10.92499
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.018578 B = 0.011410 C = 0.008139
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1506.808916 B = 2453.327118 C = 3439.222785
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.094 4.094
3 C -0.140 4.140
4 C -0.059 4.059
5 C 0.176 3.824
6 N -0.525 5.525
7 C 0.279 3.721
8 N -0.551 5.551
9 C 0.342 3.658
10 O -0.473 6.473
11 C -0.144 4.144
12 C 0.059 3.941
13 C -0.513 4.513
14 H 0.053 0.947
15 C 0.067 3.933
16 N -0.886 5.886
17 Si 0.890 3.110
18 H -0.277 1.277
19 H -0.286 1.286
20 H -0.275 1.275
21 H 0.046 0.954
22 H 0.050 0.950
23 H 0.059 0.941
24 H 0.097 0.903
25 H 0.044 0.956
26 H 0.049 0.951
27 H 0.053 0.947
28 H 0.092 0.908
29 H 0.071 0.929
30 H 0.188 0.812
31 H 0.404 0.596
32 H 0.039 0.961
33 H 0.038 0.962
34 H 0.264 0.736
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.721 7.952 2.981 8.523
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.113 4.113
3 C -0.197 4.197
4 C -0.097 4.097
5 C 0.032 3.968
6 N -0.241 5.241
7 C -0.009 4.009
8 N -0.276 5.276
9 C 0.155 3.845
10 O -0.279 6.279
11 C -0.150 4.150
12 C 0.021 3.979
13 C -0.551 4.551
14 H 0.071 0.929
15 C -0.136 4.136
16 N -0.524 5.524
17 Si 0.717 3.283
18 H -0.202 1.202
19 H -0.211 1.211
20 H -0.200 1.200
21 H 0.065 0.935
22 H 0.069 0.931
23 H 0.078 0.922
24 H 0.115 0.885
25 H 0.063 0.937
26 H 0.068 0.932
27 H 0.072 0.928
28 H 0.111 0.889
29 H 0.090 0.910
30 H 0.204 0.796
31 H 0.263 0.737
32 H 0.058 0.942
33 H 0.056 0.944
34 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges 1.131 8.189 3.849 9.118
hybrid contribution -0.410 -0.373 -1.848 1.929
sum 0.721 7.816 2.001 8.100
Atomic orbital electron populations
1.21760 0.95321 1.01967 1.00704 1.21110 0.95393 0.95677 0.99119
1.21816 1.01241 0.96210 1.00481 1.20600 0.87736 1.02598 0.98779
1.21442 0.97044 0.88185 0.90146 1.68124 1.06937 1.29718 1.19281
1.24357 0.88133 0.94008 0.94429 1.67790 1.43679 1.02609 1.13500
1.19326 0.87416 0.85426 0.92306 1.84605 1.79162 1.35361 1.28800
1.22408 0.94738 0.99768 0.98054 1.18240 0.93856 0.90453 0.95305
1.20797 1.33927 1.06444 0.93971 0.92896 1.24925 0.95508 0.94867
0.98277 1.69928 1.35090 1.10772 1.36572 0.86683 0.78499 0.78119
0.84953 1.20217 1.21133 1.20005 0.93461 0.93106 0.92180 0.88480
0.93667 0.93181 0.92792 0.88932 0.91004 0.79574 0.73716 0.94244
0.94378 0.92585
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.10 9.19 37.16 0.34 -1.76 16
2 C -0.09 -1.60 2.91 -90.62 -0.26 -1.86 16
3 C -0.14 -2.17 8.94 37.15 0.33 -1.84 16
4 C -0.06 -1.04 4.64 -27.88 -0.13 -1.17 16
5 C 0.18 3.40 5.39 -82.31 -0.44 2.95 16
6 N -0.52 -9.49 9.38 -10.86 -0.10 -9.59 16
7 C 0.28 4.76 12.28 -92.19 -1.13 3.63 16
8 N -0.55 -10.54 10.46 -14.64 -0.15 -10.69 16
9 C 0.34 7.01 7.81 -16.70 -0.13 6.88 16
10 O -0.47 -9.18 12.75 -18.25 -0.23 -9.42 16
11 C -0.14 -3.06 5.12 -104.20 -0.53 -3.59 16
12 C 0.06 1.41 4.56 -29.03 -0.13 1.28 16
13 C -0.51 -12.89 7.71 -34.44 -0.27 -13.15 16
14 H 0.05 1.33 7.50 -52.49 -0.39 0.93 16
15 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16
16 N -0.89 -24.34 13.29 55.43 0.74 -23.60 16
17 Si 0.89 20.12 29.54 -169.99 -5.02 15.10 16
18 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16
19 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16
20 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16
21 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16
22 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16
23 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16
24 H 0.10 1.96 6.40 -51.93 -0.33 1.63 16
25 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16
26 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16
27 H 0.05 0.91 6.69 -51.93 -0.35 0.56 16
28 H 0.09 1.71 6.07 -51.93 -0.32 1.40 16
29 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16
30 H 0.19 2.40 8.06 -52.48 -0.42 1.98 16
31 H 0.40 6.27 9.06 45.56 0.41 6.69 16
32 H 0.04 1.03 7.63 -51.93 -0.40 0.63 16
33 H 0.04 0.94 6.08 -51.93 -0.32 0.63 16
34 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16
LS Contribution 285.39 15.07 4.30 4.30
Total: -1.00 -28.49 285.39 -6.71 -35.20
By element:
Atomic # 1 Polarization: 9.47 SS G_CDS: -3.78 Total: 5.69 kcal
Atomic # 6 Polarization: -4.53 SS G_CDS: -2.45 Total: -6.99 kcal
Atomic # 7 Polarization: -44.37 SS G_CDS: 0.48 Total: -43.88 kcal
Atomic # 8 Polarization: -9.18 SS G_CDS: -0.23 Total: -9.42 kcal
Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal
Total LS contribution 4.30 Total: 4.30 kcal
Total: -28.49 -6.71 -35.20 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260593194.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 14.802 kcal
(2) G-P(sol) polarization free energy of solvation -28.494 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.692 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.707 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.201 kcal
(6) G-S(sol) free energy of system = (1) + (5) -20.399 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds