Wall clock time and date at job start Mon Mar 30 2020 03:12:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.52995 * 109.46853 * 2 1
4 4 C 1.52998 * 109.46747 * 119.99305 * 2 1 3
5 5 C 1.50703 * 109.46919 * 174.99765 * 4 2 1
6 6 N 1.32524 * 120.40666 * 90.00383 * 5 4 2
7 7 C 1.31753 * 120.96418 * 179.97438 * 6 5 4
8 8 N 1.31793 * 121.81528 * 359.97438 * 7 6 5
9 9 C 1.32792 * 120.71795 * 359.97438 * 8 7 6
10 10 O 1.35520 * 120.51527 * 180.02562 * 9 8 7
11 11 C 1.38188 * 120.41420 * 269.98005 * 5 4 2
12 12 C 1.50697 * 120.82341 * 0.02562 * 11 5 4
13 13 C 1.50703 * 109.47002 * 90.00196 * 12 11 5
14 14 H 1.07998 * 120.00096 * 359.97438 * 13 12 11
15 15 C 1.37881 * 119.99831 * 179.97438 * 13 12 11
16 16 N 1.31509 * 119.99805 * 0.02562 * 15 13 12
17 17 Si 1.86794 * 119.99903 * 179.97438 * 15 13 12
18 18 H 1.48502 * 109.47419 * 60.00048 * 17 15 13
19 19 H 1.48505 * 109.47147 * 180.02562 * 17 15 13
20 20 H 1.48500 * 109.47290 * 299.99994 * 17 15 13
21 21 H 1.09004 * 109.47564 * 300.00324 * 1 2 3
22 22 H 1.09002 * 109.47517 * 60.00344 * 1 2 3
23 23 H 1.09001 * 109.47410 * 180.02562 * 1 2 3
24 24 H 1.08991 * 109.47341 * 239.99380 * 2 1 3
25 25 H 1.09006 * 109.47297 * 299.99361 * 3 2 1
26 26 H 1.08996 * 109.48055 * 59.99829 * 3 2 1
27 27 H 1.09000 * 109.47017 * 180.02562 * 3 2 1
28 28 H 1.09005 * 109.46908 * 55.00595 * 4 2 1
29 29 H 1.08999 * 109.47900 * 295.00087 * 4 2 1
30 30 H 1.08007 * 119.09428 * 180.02562 * 7 6 5
31 31 H 0.96697 * 114.00017 * 269.98134 * 10 9 8
32 32 H 1.08996 * 109.47051 * 209.99530 * 12 11 5
33 33 H 1.08996 * 109.47478 * 329.99515 * 12 11 5
34 34 H 0.97009 * 120.00019 * 180.02562 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 2.0399 -0.7211 1.2493
5 6 3.5418 -0.8293 1.1890
6 7 4.3043 0.1252 1.7026
7 6 5.6183 0.0416 1.6564
8 7 6.2301 -0.9861 1.1027
9 6 5.5338 -1.9822 0.5677
10 8 6.1671 -3.0373 -0.0001
11 6 4.1410 -1.9253 0.5979
12 6 3.3098 -3.0321 0.0022
13 6 3.0316 -2.7271 -1.4472
14 1 3.4178 -1.8220 -1.8923
15 6 2.2841 -3.6035 -2.2050
16 7 1.8135 -4.7053 -1.6628
17 14 1.9387 -3.2250 -4.0013
18 1 3.2223 -3.1167 -4.7401
19 1 1.1196 -4.3158 -4.5883
20 1 1.1990 -1.9414 -4.1034
21 1 -0.3634 0.5139 0.8900
22 1 -0.3634 0.5138 -0.8900
23 1 -0.3634 -1.0277 0.0005
24 1 1.8933 -0.5139 -0.8898
25 1 1.6766 1.9563 -0.8901
26 1 1.6766 1.9564 0.8899
27 1 3.1299 1.4425 -0.0005
28 1 1.6053 -1.7197 1.2953
29 1 1.7516 -0.1582 2.1371
30 1 6.2106 0.8368 2.0848
31 1 6.3499 -2.9252 -0.9430
32 1 3.8521 -3.9746 0.0774
33 1 2.3675 -3.1109 0.5443
34 1 1.2878 -5.3221 -2.1960
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260593194.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:12:27
Heat of formation + Delta-G solvation = -39.394739 kcal
Electronic energy + Delta-G solvation = -17188.969535 eV
Core-core repulsion = 14506.662949 eV
Total energy + Delta-G solvation = -2682.306585 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-42.17040 -38.63740 -37.52191 -35.48969 -34.01932 -33.21816 -29.68734 -28.30877
-27.89360 -25.85966 -23.81679 -23.05736 -21.02113 -19.59279 -18.86363 -18.50046
-17.15656 -16.67996 -15.88746 -15.77319 -15.34204 -15.03054 -14.73746 -14.33186
-14.23580 -13.46178 -13.44609 -13.15765 -12.97104 -12.73908 -12.72636 -12.43191
-12.25651 -12.06566 -11.79375 -11.62622 -11.38531 -11.15129 -11.03080 -10.57936
-10.14657 -9.89554 -8.17400 -6.27859 -0.01989 0.09964 1.42239 1.43214
1.50411 2.40106 2.50454 2.84930 3.15501 3.19275 3.56488 4.02856
4.06571 4.12925 4.17767 4.36591 4.60177 4.74124 4.84485 4.86231
4.91703 4.97172 5.07438 5.17206 5.32398 5.33830 5.51574 5.56131
5.59901 5.65318 5.74939 6.05845 6.14918 6.59212 6.80229 7.16028
7.39122 8.92265
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.018578 B = 0.011410 C = 0.008139
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1506.808916 B = 2453.327118 C = 3439.222785
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C -0.093 4.093
3 C -0.132 4.132
4 C -0.057 4.057
5 C 0.182 3.818
6 N -0.522 5.522
7 C 0.289 3.711
8 N -0.559 5.559
9 C 0.338 3.662
10 O -0.483 6.483
11 C -0.176 4.176
12 C 0.076 3.924
13 C -0.509 4.509
14 H 0.051 0.949
15 C 0.020 3.980
16 N -0.922 5.922
17 Si 0.949 3.051
18 H -0.271 1.271
19 H -0.286 1.286
20 H -0.267 1.267
21 H 0.071 0.929
22 H 0.059 0.941
23 H 0.043 0.957
24 H 0.060 0.940
25 H 0.056 0.944
26 H 0.068 0.932
27 H 0.038 0.962
28 H 0.074 0.926
29 H 0.095 0.905
30 H 0.234 0.766
31 H 0.418 0.582
32 H 0.007 0.993
33 H 0.022 0.978
34 H 0.264 0.736
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.821 10.207 3.069 10.690
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.193 4.193
2 C -0.112 4.112
3 C -0.189 4.189
4 C -0.095 4.095
5 C 0.038 3.962
6 N -0.238 5.238
7 C 0.002 3.998
8 N -0.284 5.284
9 C 0.152 3.848
10 O -0.292 6.292
11 C -0.182 4.182
12 C 0.038 3.962
13 C -0.547 4.547
14 H 0.069 0.931
15 C -0.179 4.179
16 N -0.562 5.562
17 Si 0.774 3.226
18 H -0.196 1.196
19 H -0.211 1.211
20 H -0.192 1.192
21 H 0.090 0.910
22 H 0.078 0.922
23 H 0.062 0.938
24 H 0.079 0.921
25 H 0.075 0.925
26 H 0.087 0.913
27 H 0.057 0.943
28 H 0.093 0.907
29 H 0.113 0.887
30 H 0.250 0.750
31 H 0.279 0.721
32 H 0.025 0.975
33 H 0.040 0.960
34 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges 1.245 10.456 3.926 11.238
hybrid contribution -0.379 -1.023 -1.803 2.107
sum 0.866 9.433 2.123 9.708
Atomic orbital electron populations
1.21722 0.93706 1.01474 1.02410 1.21045 0.96758 0.96328 0.97048
1.21735 1.00158 0.95049 1.01956 1.20626 0.86685 1.02106 1.00111
1.21655 0.98002 0.87574 0.88999 1.68257 1.07350 1.28901 1.19294
1.25359 0.88216 0.93984 0.92279 1.67924 1.43504 1.02843 1.14149
1.19443 0.87321 0.85795 0.92280 1.84554 1.79032 1.35606 1.30042
1.22195 0.95046 1.00237 1.00679 1.17868 0.93078 0.90207 0.95031
1.20961 1.33110 1.05949 0.94665 0.93096 1.25651 0.95457 0.94686
1.02121 1.70047 1.36190 1.11846 1.38067 0.85745 0.78480 0.78019
0.80352 1.19570 1.21147 1.19214 0.90987 0.92153 0.93798 0.92135
0.92543 0.91344 0.94308 0.90743 0.88710 0.75028 0.72093 0.97461
0.96030 0.92668
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.85 9.19 71.98 0.66 -3.19 16
2 C -0.09 -3.05 2.91 -10.80 -0.03 -3.08 16
3 C -0.13 -3.74 8.94 71.98 0.64 -3.10 16
4 C -0.06 -1.97 4.64 29.85 0.14 -1.83 16
5 C 0.18 6.89 5.39 42.44 0.23 7.12 16
6 N -0.52 -17.67 9.38 -188.29 -1.77 -19.44 16
7 C 0.29 9.03 12.28 180.90 2.22 11.26 16
8 N -0.56 -20.44 10.46 -312.89 -3.27 -23.71 16
9 C 0.34 13.79 7.81 84.83 0.66 14.46 16
10 O -0.48 -18.97 12.75 -88.23 -1.13 -20.10 16
11 C -0.18 -7.55 5.12 -19.59 -0.10 -7.65 16
12 C 0.08 3.77 4.56 29.10 0.13 3.90 16
13 C -0.51 -26.13 7.71 25.60 0.20 -25.93 16
14 H 0.05 2.59 7.50 -2.91 -0.02 2.57 16
15 C 0.02 1.07 5.46 84.66 0.46 1.53 16
16 N -0.92 -52.02 13.29 21.45 0.28 -51.74 16
17 Si 0.95 41.44 29.54 68.60 2.03 43.47 16
18 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16
19 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16
20 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16
21 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16
22 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16
23 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16
24 H 0.06 2.45 6.40 -2.39 -0.02 2.43 16
25 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16
26 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16
27 H 0.04 1.21 6.69 -2.39 -0.02 1.19 16
28 H 0.07 2.82 6.07 -2.38 -0.01 2.80 16
29 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16
30 H 0.23 4.92 8.06 -2.91 -0.02 4.89 16
31 H 0.42 13.13 9.06 -74.06 -0.67 12.46 16
32 H 0.01 0.39 7.63 -2.39 -0.02 0.37 16
33 H 0.02 1.13 6.08 -2.39 -0.01 1.11 16
34 H 0.26 14.22 8.31 -92.70 -0.77 13.45 16
Total: -1.00 -61.16 285.39 1.80 -59.36
By element:
Atomic # 1 Polarization: 18.23 SS G_CDS: 0.44 Total: 18.67 kcal
Atomic # 6 Polarization: -11.74 SS G_CDS: 5.22 Total: -6.52 kcal
Atomic # 7 Polarization: -90.13 SS G_CDS: -4.76 Total: -94.88 kcal
Atomic # 8 Polarization: -18.97 SS G_CDS: -1.13 Total: -20.10 kcal
Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal
Total: -61.16 1.80 -59.36 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260593194.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 19.965 kcal
(2) G-P(sol) polarization free energy of solvation -61.162 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.196 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.802 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.360 kcal
(6) G-S(sol) free energy of system = (1) + (5) -39.395 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds