Wall clock time and date at job start Mon Mar 30 2020 03:12:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42902 * 1
3 3 C 1.35447 * 117.00154 * 2 1
4 4 N 1.31927 * 119.05141 * 354.57832 * 3 2 1
5 5 C 1.34018 * 120.52615 * 179.97438 * 4 3 2
6 6 C 1.41533 * 120.63162 * 180.02562 * 5 4 3
7 7 H 1.08002 * 120.00123 * 169.67446 * 6 5 4
8 8 C 1.40107 * 120.00183 * 349.94186 * 6 5 4
9 9 N 1.30674 * 120.00465 * 162.44474 * 8 6 5
10 10 Si 1.86800 * 120.00017 * 342.45347 * 8 6 5
11 11 H 1.48499 * 109.47370 * 85.80933 * 10 8 6
12 12 H 1.48498 * 109.47253 * 205.81094 * 10 8 6
13 13 H 1.48501 * 109.47148 * 325.80887 * 10 8 6
14 14 C 1.40925 * 118.73958 * 0.27810 * 5 4 3
15 15 C 1.38315 * 118.27767 * 359.43165 * 14 5 4
16 16 C 1.50694 * 120.34427 * 180.26133 * 15 14 5
17 17 C 1.53004 * 109.46743 * 75.30762 * 16 15 14
18 18 C 1.52996 * 109.47313 * 195.31226 * 16 15 14
19 19 C 1.53004 * 109.46687 * 315.31268 * 16 15 14
20 20 N 1.32407 * 119.31593 * 0.57248 * 15 14 5
21 21 H 1.09001 * 109.47652 * 178.35992 * 1 2 3
22 22 H 1.09001 * 109.47344 * 298.36387 * 1 2 3
23 23 H 1.09002 * 109.47127 * 58.36025 * 1 2 3
24 24 H 0.96995 * 119.99972 * 180.02562 * 9 8 6
25 25 H 1.08000 * 120.86673 * 179.70001 * 14 5 4
26 26 H 1.08997 * 109.46821 * 60.00617 * 17 16 15
27 27 H 1.09002 * 109.46645 * 180.02562 * 17 16 15
28 28 H 1.08997 * 109.47170 * 299.99886 * 17 16 15
29 29 H 1.08995 * 109.47387 * 60.00278 * 18 16 15
30 30 H 1.09006 * 109.46676 * 179.97438 * 18 16 15
31 31 H 1.09001 * 109.47017 * 299.99329 * 18 16 15
32 32 H 1.08994 * 109.47426 * 60.00072 * 19 16 15
33 33 H 1.09008 * 109.46625 * 179.97438 * 19 16 15
34 34 H 1.08995 * 109.47400 * 299.99346 * 19 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0440 1.2068 0.0000
4 7 1.3119 2.2989 -0.1090
5 6 1.8895 3.5082 -0.1117
6 6 1.1062 4.6813 -0.2280
7 1 1.5556 5.6493 -0.0628
8 6 -0.2537 4.5864 -0.5517
9 7 -1.0505 5.5979 -0.3293
10 14 -0.9279 3.0138 -1.3012
11 1 -1.2831 2.0619 -0.2182
12 1 -2.1386 3.3265 -2.1021
13 1 0.1021 2.4027 -2.1792
14 6 3.2921 3.5894 -0.0021
15 6 4.0094 2.4127 0.1157
16 6 5.5107 2.4456 0.2418
17 6 5.8942 2.8892 1.6550
18 6 6.0757 1.0491 -0.0255
19 6 6.0864 3.4321 -0.7762
20 7 3.3639 1.2566 0.1104
21 1 -0.3634 -1.0272 -0.0294
22 1 -0.3634 0.4882 0.9043
23 1 -0.3633 0.5391 -0.8749
24 1 -1.9920 5.5320 -0.5531
25 1 3.7937 4.5459 -0.0055
26 1 5.4840 2.1864 2.3802
27 1 6.9801 2.9134 1.7460
28 1 5.4917 3.8841 1.8453
29 1 5.8025 0.7332 -1.0322
30 1 7.1617 1.0732 0.0653
31 1 5.6656 0.3464 0.6998
32 1 5.6839 4.4270 -0.5859
33 1 7.1723 3.4563 -0.6848
34 1 5.8132 3.1162 -1.7830
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260614901.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:12:29
Heat of formation + Delta-G solvation = -16.317243 kcal
Electronic energy + Delta-G solvation = -17174.292856 eV
Core-core repulsion = 14492.986986 eV
Total energy + Delta-G solvation = -2681.305870 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-39.85388 -37.75235 -36.03004 -33.89412 -31.89830 -29.84421 -27.31106 -27.16683
-26.89074 -25.87874 -22.87858 -21.71737 -19.30703 -17.88071 -17.13406 -15.80877
-15.47921 -15.03374 -14.59865 -14.02187 -13.80979 -13.68537 -13.24591 -13.09374
-12.66363 -11.98109 -11.87108 -11.71993 -11.61169 -11.27345 -11.14655 -10.86960
-10.67423 -10.65942 -10.49232 -10.31313 -10.07254 -9.45046 -9.27359 -8.92908
-7.80835 -7.64097 -7.11046 -5.01900 2.42702 2.55095 3.24023 3.33243
3.43874 3.60295 4.17890 4.44618 5.05083 5.27183 5.28489 5.55323
5.63864 5.71456 5.78023 5.82353 5.93059 5.95449 6.13706 6.14822
6.20197 6.30100 6.31338 6.37296 6.42782 6.63112 6.71216 6.83088
6.87860 7.02304 7.45893 7.79875 7.92899 8.24571 8.43337 8.79694
9.63390 9.78009
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.026569 B = 0.009960 C = 0.007779
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1053.588348 B = 2810.631269 C = 3598.588887
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.046 3.954
2 O -0.309 6.309
3 C 0.514 3.486
4 N -0.648 5.648
5 C 0.283 3.717
6 C -0.397 4.397
7 H 0.102 0.898
8 C 0.087 3.913
9 N -0.782 5.782
10 Si 0.988 3.012
11 H -0.261 1.261
12 H -0.324 1.324
13 H -0.271 1.271
14 C -0.324 4.324
15 C 0.205 3.795
16 C -0.014 4.014
17 C -0.132 4.132
18 C -0.120 4.120
19 C -0.135 4.135
20 N -0.610 5.610
21 H 0.088 0.912
22 H 0.056 0.944
23 H 0.054 0.946
24 H 0.292 0.708
25 H 0.117 0.883
26 H 0.054 0.946
27 H 0.055 0.945
28 H 0.057 0.943
29 H 0.052 0.948
30 H 0.042 0.958
31 H 0.063 0.937
32 H 0.061 0.939
33 H 0.054 0.946
34 H 0.054 0.946
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.904 -4.369 0.205 7.347
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.050 4.050
2 O -0.212 6.212
3 C 0.209 3.791
4 N -0.391 5.391
5 C 0.158 3.842
6 C -0.431 4.431
7 H 0.119 0.881
8 C -0.138 4.138
9 N -0.404 5.404
10 Si 0.822 3.178
11 H -0.187 1.187
12 H -0.256 1.256
13 H -0.197 1.197
14 C -0.350 4.350
15 C 0.070 3.930
16 C -0.015 4.015
17 C -0.190 4.190
18 C -0.178 4.178
19 C -0.193 4.193
20 N -0.344 5.344
21 H 0.107 0.893
22 H 0.075 0.925
23 H 0.073 0.927
24 H 0.103 0.897
25 H 0.135 0.865
26 H 0.073 0.927
27 H 0.074 0.926
28 H 0.076 0.924
29 H 0.071 0.929
30 H 0.061 0.939
31 H 0.082 0.918
32 H 0.080 0.920
33 H 0.073 0.927
34 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges 5.377 -5.312 0.250 7.562
hybrid contribution -0.365 0.506 -0.284 0.685
sum 5.012 -4.806 -0.034 6.944
Atomic orbital electron populations
1.23132 0.77734 1.01756 1.02379 1.85892 1.21712 1.25050 1.88499
1.20333 0.86387 0.83762 0.88576 1.67216 1.39178 0.99166 1.33513
1.18401 0.90032 0.89069 0.86716 1.19559 0.92956 0.93156 1.37381
0.88054 1.26442 0.96591 0.99348 0.91442 1.69615 1.06619 1.32701
1.31457 0.85002 0.74793 0.79125 0.78923 1.18748 1.25604 1.19683
1.21960 0.94996 0.98302 1.19748 1.20531 0.94148 0.87622 0.90715
1.19370 0.89611 0.96610 0.95918 1.21809 1.00407 1.01497 0.95243
1.21603 0.98120 0.95633 1.02437 1.21876 0.99697 0.99102 0.98595
1.67108 1.06345 1.29514 1.31410 0.89318 0.92498 0.92719 0.89743
0.86460 0.92686 0.92606 0.92377 0.92892 0.93871 0.91788 0.92025
0.92689 0.92701
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.05 0.88 9.35 101.05 0.94 1.82 16
2 O -0.31 -7.02 10.55 -18.03 -0.19 -7.21 16
3 C 0.51 12.89 8.48 -91.39 -0.77 12.11 16
4 N -0.65 -16.81 4.64 -12.67 -0.06 -16.87 16
5 C 0.28 7.34 6.25 -84.64 -0.53 6.82 16
6 C -0.40 -10.51 9.69 -37.63 -0.36 -10.88 16
7 H 0.10 2.69 8.06 -52.49 -0.42 2.27 16
8 C 0.09 2.26 5.51 -17.34 -0.10 2.16 16
9 N -0.78 -20.01 13.92 55.55 0.77 -19.24 16
10 Si 0.99 23.12 22.89 -169.99 -3.89 19.23 16
11 H -0.26 -5.86 5.25 56.52 0.30 -5.56 16
12 H -0.32 -7.28 7.11 56.52 0.40 -6.88 16
13 H -0.27 -6.78 6.90 56.52 0.39 -6.39 16
14 C -0.32 -7.53 8.98 -38.54 -0.35 -7.88 16
15 C 0.21 4.49 5.57 -82.32 -0.46 4.03 16
16 C -0.01 -0.24 0.88 -155.66 -0.14 -0.38 16
17 C -0.13 -1.98 8.42 37.16 0.31 -1.67 16
18 C -0.12 -1.92 7.83 37.16 0.29 -1.63 16
19 C -0.14 -2.01 8.09 37.16 0.30 -1.71 16
20 N -0.61 -14.64 9.19 -11.03 -0.10 -14.74 16
21 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16
22 H 0.06 1.09 7.74 -51.93 -0.40 0.69 16
23 H 0.05 1.09 4.75 -51.93 -0.25 0.85 16
24 H 0.29 6.77 8.29 -40.82 -0.34 6.43 16
25 H 0.12 2.50 6.82 -52.49 -0.36 2.14 16
26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16
27 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16
28 H 0.06 0.88 8.12 -51.93 -0.42 0.46 16
29 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16
30 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16
31 H 0.06 1.10 7.88 -51.93 -0.41 0.69 16
32 H 0.06 0.92 6.77 -51.93 -0.35 0.57 16
33 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16
34 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16
LS Contribution 274.93 15.07 4.14 4.14
Total: -1.00 -28.78 274.93 -5.00 -33.78
By element:
Atomic # 1 Polarization: 2.93 SS G_CDS: -4.82 Total: -1.89 kcal
Atomic # 6 Polarization: 3.66 SS G_CDS: -0.86 Total: 2.80 kcal
Atomic # 7 Polarization: -51.46 SS G_CDS: 0.61 Total: -50.85 kcal
Atomic # 8 Polarization: -7.02 SS G_CDS: -0.19 Total: -7.21 kcal
Atomic # 14 Polarization: 23.12 SS G_CDS: -3.89 Total: 19.23 kcal
Total LS contribution 4.14 Total: 4.14 kcal
Total: -28.78 -5.00 -33.78 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260614901.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 17.462 kcal
(2) G-P(sol) polarization free energy of solvation -28.776 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.314 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.003 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.779 kcal
(6) G-S(sol) free energy of system = (1) + (5) -16.317 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds