Wall clock time and date at job start Mon Mar 30 2020 03:12:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42902 * 1
3 3 C 1.35447 * 117.00154 * 2 1
4 4 N 1.31927 * 119.05141 * 354.57832 * 3 2 1
5 5 C 1.34018 * 120.52615 * 179.97438 * 4 3 2
6 6 C 1.41533 * 120.63162 * 180.02562 * 5 4 3
7 7 H 1.08002 * 120.00123 * 169.67446 * 6 5 4
8 8 C 1.40107 * 120.00183 * 349.94186 * 6 5 4
9 9 N 1.30674 * 120.00465 * 162.44474 * 8 6 5
10 10 Si 1.86800 * 120.00017 * 342.45347 * 8 6 5
11 11 H 1.48499 * 109.47370 * 85.80933 * 10 8 6
12 12 H 1.48498 * 109.47253 * 205.81094 * 10 8 6
13 13 H 1.48501 * 109.47148 * 325.80887 * 10 8 6
14 14 C 1.40925 * 118.73958 * 0.27810 * 5 4 3
15 15 C 1.38315 * 118.27767 * 359.43165 * 14 5 4
16 16 C 1.50694 * 120.34427 * 180.26133 * 15 14 5
17 17 C 1.53004 * 109.46743 * 75.30762 * 16 15 14
18 18 C 1.52996 * 109.47313 * 195.31226 * 16 15 14
19 19 C 1.53004 * 109.46687 * 315.31268 * 16 15 14
20 20 N 1.32407 * 119.31593 * 0.57248 * 15 14 5
21 21 H 1.09001 * 109.47652 * 178.35992 * 1 2 3
22 22 H 1.09001 * 109.47344 * 298.36387 * 1 2 3
23 23 H 1.09002 * 109.47127 * 58.36025 * 1 2 3
24 24 H 0.96995 * 119.99972 * 180.02562 * 9 8 6
25 25 H 1.08000 * 120.86673 * 179.70001 * 14 5 4
26 26 H 1.08997 * 109.46821 * 60.00617 * 17 16 15
27 27 H 1.09002 * 109.46645 * 180.02562 * 17 16 15
28 28 H 1.08997 * 109.47170 * 299.99886 * 17 16 15
29 29 H 1.08995 * 109.47387 * 60.00278 * 18 16 15
30 30 H 1.09006 * 109.46676 * 179.97438 * 18 16 15
31 31 H 1.09001 * 109.47017 * 299.99329 * 18 16 15
32 32 H 1.08994 * 109.47426 * 60.00072 * 19 16 15
33 33 H 1.09008 * 109.46625 * 179.97438 * 19 16 15
34 34 H 1.08995 * 109.47400 * 299.99346 * 19 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0440 1.2068 0.0000
4 7 1.3119 2.2989 -0.1090
5 6 1.8895 3.5082 -0.1117
6 6 1.1062 4.6813 -0.2280
7 1 1.5556 5.6493 -0.0628
8 6 -0.2537 4.5864 -0.5517
9 7 -1.0505 5.5979 -0.3293
10 14 -0.9279 3.0138 -1.3012
11 1 -1.2831 2.0619 -0.2182
12 1 -2.1386 3.3265 -2.1021
13 1 0.1021 2.4027 -2.1792
14 6 3.2921 3.5894 -0.0021
15 6 4.0094 2.4127 0.1157
16 6 5.5107 2.4456 0.2418
17 6 5.8942 2.8892 1.6550
18 6 6.0757 1.0491 -0.0255
19 6 6.0864 3.4321 -0.7762
20 7 3.3639 1.2566 0.1104
21 1 -0.3634 -1.0272 -0.0294
22 1 -0.3634 0.4882 0.9043
23 1 -0.3633 0.5391 -0.8749
24 1 -1.9920 5.5320 -0.5531
25 1 3.7937 4.5459 -0.0055
26 1 5.4840 2.1864 2.3802
27 1 6.9801 2.9134 1.7460
28 1 5.4917 3.8841 1.8453
29 1 5.8025 0.7332 -1.0322
30 1 7.1617 1.0732 0.0653
31 1 5.6656 0.3464 0.6998
32 1 5.6839 4.4270 -0.5859
33 1 7.1723 3.4563 -0.6848
34 1 5.8132 3.1162 -1.7830
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260614901.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:12:29
Heat of formation + Delta-G solvation = -35.952439 kcal
Electronic energy + Delta-G solvation = -17175.144302 eV
Core-core repulsion = 14492.986986 eV
Total energy + Delta-G solvation = -2682.157316 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-41.67698 -39.40670 -37.61883 -35.78089 -33.78292 -31.65380 -29.05922 -28.61947
-28.07535 -27.44895 -24.59468 -23.58976 -20.96277 -19.74181 -18.83149 -17.58951
-17.26704 -16.88715 -16.24990 -15.59010 -15.45244 -15.18152 -14.89437 -14.58095
-14.36544 -13.69983 -13.35685 -13.18158 -13.02622 -12.88997 -12.69405 -12.51897
-12.28370 -12.08910 -11.96472 -11.80636 -11.69597 -11.32228 -11.09077 -10.79327
-9.66746 -9.54589 -9.06252 -7.00896 0.58337 0.61776 1.33585 1.46188
1.53633 1.89799 2.30526 2.50924 3.45516 3.56224 3.85057 3.97423
4.17354 4.26837 4.34910 4.40417 4.43980 4.60996 4.74128 4.84507
4.86244 4.92147 4.96122 5.04494 5.07152 5.13639 5.23410 5.28647
5.48891 5.59573 5.69124 5.80397 6.00949 6.29525 6.51487 6.87607
7.72223 7.87692
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.026569 B = 0.009960 C = 0.007779
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1053.588348 B = 2810.631269 C = 3598.588887
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.040 3.960
2 O -0.314 6.314
3 C 0.496 3.504
4 N -0.660 5.660
5 C 0.268 3.732
6 C -0.426 4.426
7 H 0.088 0.912
8 C 0.062 3.938
9 N -0.803 5.803
10 Si 1.029 2.971
11 H -0.249 1.249
12 H -0.308 1.308
13 H -0.298 1.298
14 C -0.337 4.337
15 C 0.207 3.793
16 C -0.018 4.018
17 C -0.127 4.127
18 C -0.114 4.114
19 C -0.131 4.131
20 N -0.615 5.615
21 H 0.139 0.861
22 H 0.051 0.949
23 H 0.042 0.958
24 H 0.303 0.697
25 H 0.132 0.868
26 H 0.042 0.958
27 H 0.092 0.908
28 H 0.053 0.947
29 H 0.037 0.963
30 H 0.080 0.920
31 H 0.047 0.953
32 H 0.057 0.943
33 H 0.091 0.909
34 H 0.043 0.957
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.239 -5.346 0.361 9.006
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.055 4.055
2 O -0.217 6.217
3 C 0.191 3.809
4 N -0.403 5.403
5 C 0.142 3.858
6 C -0.459 4.459
7 H 0.106 0.894
8 C -0.161 4.161
9 N -0.426 5.426
10 Si 0.861 3.139
11 H -0.175 1.175
12 H -0.239 1.239
13 H -0.226 1.226
14 C -0.362 4.362
15 C 0.071 3.929
16 C -0.019 4.019
17 C -0.184 4.184
18 C -0.172 4.172
19 C -0.188 4.188
20 N -0.349 5.349
21 H 0.157 0.843
22 H 0.069 0.931
23 H 0.061 0.939
24 H 0.114 0.886
25 H 0.150 0.850
26 H 0.061 0.939
27 H 0.111 0.889
28 H 0.072 0.928
29 H 0.057 0.943
30 H 0.099 0.901
31 H 0.066 0.934
32 H 0.076 0.924
33 H 0.110 0.890
34 H 0.062 0.938
Dipole moment (debyes) X Y Z Total
from point charges 6.687 -6.282 0.415 9.184
hybrid contribution -0.697 0.743 -0.316 1.067
sum 5.990 -5.538 0.099 8.159
Atomic orbital electron populations
1.23423 0.75813 1.04824 1.01438 1.85908 1.23630 1.23914 1.88215
1.20750 0.87055 0.84339 0.88707 1.67200 1.39773 0.99387 1.33916
1.18668 0.91370 0.89074 0.86682 1.19583 0.93794 0.92954 1.39617
0.89379 1.26907 0.96592 1.01060 0.91587 1.69593 1.07424 1.33452
1.32176 0.84457 0.74102 0.77095 0.78285 1.17491 1.23893 1.22552
1.22157 0.94183 0.99720 1.20166 1.21419 0.96750 0.86460 0.88235
1.19631 0.86109 0.98195 0.97997 1.21789 1.02754 1.00685 0.93222
1.21556 1.00360 0.94282 1.00972 1.21861 1.01869 0.97996 0.97114
1.67292 1.06066 1.30482 1.31040 0.84283 0.93064 0.93944 0.88557
0.84997 0.93926 0.88889 0.92830 0.94334 0.90127 0.93397 0.92372
0.89045 0.93797
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 1.46 9.35 113.37 1.06 2.52 16
2 O -0.31 -14.01 10.55 -87.44 -0.92 -14.93 16
3 C 0.50 24.81 8.48 180.62 1.53 26.34 16
4 N -0.66 -34.43 4.64 -307.16 -1.43 -35.86 16
5 C 0.27 14.12 6.25 40.28 0.25 14.38 16
6 C -0.43 -23.14 9.69 23.54 0.23 -22.91 16
7 H 0.09 4.86 8.06 -2.91 -0.02 4.84 16
8 C 0.06 3.24 5.51 85.32 0.47 3.71 16
9 N -0.80 -41.45 13.92 21.85 0.30 -41.15 16
10 Si 1.03 47.60 22.89 68.60 1.57 49.17 16
11 H -0.25 -10.90 5.25 99.48 0.52 -10.38 16
12 H -0.31 -13.25 7.11 99.48 0.71 -12.54 16
13 H -0.30 -15.03 6.90 99.48 0.69 -14.35 16
14 C -0.34 -15.70 8.98 22.95 0.21 -15.49 16
15 C 0.21 8.92 5.57 42.49 0.24 9.16 16
16 C -0.02 -0.58 0.88 -52.93 -0.05 -0.63 16
17 C -0.13 -3.45 8.42 71.98 0.61 -2.84 16
18 C -0.11 -3.35 7.83 71.98 0.56 -2.79 16
19 C -0.13 -3.52 8.09 71.98 0.58 -2.94 16
20 N -0.61 -29.26 9.19 -301.66 -2.77 -32.03 16
21 H 0.14 3.57 8.14 -2.39 -0.02 3.55 16
22 H 0.05 1.90 7.74 -2.39 -0.02 1.89 16
23 H 0.04 1.64 4.75 -2.39 -0.01 1.63 16
24 H 0.30 14.01 8.29 -92.71 -0.77 13.25 16
25 H 0.13 5.61 6.82 -2.91 -0.02 5.59 16
26 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16
27 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16
28 H 0.05 1.50 8.12 -2.39 -0.02 1.48 16
29 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16
30 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16
31 H 0.05 1.54 7.88 -2.39 -0.02 1.53 16
32 H 0.06 1.60 6.77 -2.39 -0.02 1.58 16
33 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16
34 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16
Total: -1.00 -62.50 274.93 3.32 -59.17
By element:
Atomic # 1 Polarization: 6.24 SS G_CDS: 0.88 Total: 7.12 kcal
Atomic # 6 Polarization: 2.81 SS G_CDS: 5.69 Total: 8.50 kcal
Atomic # 7 Polarization: -105.14 SS G_CDS: -3.90 Total: -109.04 kcal
Atomic # 8 Polarization: -14.01 SS G_CDS: -0.92 Total: -14.93 kcal
Atomic # 14 Polarization: 47.60 SS G_CDS: 1.57 Total: 49.17 kcal
Total: -62.50 3.32 -59.17 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260614901.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 23.222 kcal
(2) G-P(sol) polarization free energy of solvation -62.499 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.277 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.325 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.174 kcal
(6) G-S(sol) free energy of system = (1) + (5) -35.952 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds