Wall clock time and date at job start Mon Mar 30 2020 03:09:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53009 * 109.46879 * 2 1
4 4 C 1.50698 * 109.47148 * 119.99534 * 2 1 3
5 5 N 1.34887 * 126.11867 * 300.03625 * 4 2 1
6 6 H 0.97007 * 126.02476 * 0.02562 * 5 4 2
7 7 N 1.40016 * 107.94030 * 179.97438 * 5 4 2
8 8 C 1.31037 * 108.24630 * 359.97438 * 7 5 4
9 9 C 1.35461 * 126.11084 * 120.00015 * 4 2 1
10 10 C 1.51283 * 142.53127 * 0.05699 * 9 4 2
11 11 O 1.42908 * 110.37714 * 281.72644 * 10 9 4
12 12 C 1.50697 * 110.29595 * 43.81266 * 10 9 4
13 13 H 1.08005 * 120.00191 * 357.24510 * 12 10 9
14 14 C 1.37877 * 120.00262 * 177.24121 * 12 10 9
15 15 N 1.31519 * 119.99965 * 0.02562 * 14 12 10
16 16 Si 1.86800 * 120.00282 * 180.02562 * 14 12 10
17 17 H 1.48505 * 109.47052 * 89.99966 * 16 14 12
18 18 H 1.48498 * 109.47364 * 210.00589 * 16 14 12
19 19 H 1.48506 * 109.46931 * 330.00084 * 16 14 12
20 20 C 1.54343 * 105.21544 * 162.74942 * 10 9 4
21 21 C 1.51616 * 142.28569 * 179.74541 * 8 7 5
22 22 H 1.08994 * 109.47564 * 299.99959 * 1 2 3
23 23 H 1.09004 * 109.47184 * 60.00634 * 1 2 3
24 24 H 1.09006 * 109.47055 * 179.97438 * 1 2 3
25 25 H 1.08994 * 109.47564 * 240.00041 * 2 1 3
26 26 H 1.08999 * 109.46931 * 179.97438 * 3 2 1
27 27 H 1.08994 * 109.46777 * 299.99821 * 3 2 1
28 28 H 1.09000 * 109.46780 * 60.00067 * 3 2 1
29 29 H 0.96698 * 113.99788 * 182.70772 * 11 10 9
30 30 H 0.96998 * 120.00012 * 179.97438 * 15 14 12
31 31 H 1.09002 * 110.77143 * 144.82905 * 20 10 9
32 32 H 1.09004 * 110.76966 * 268.05221 * 20 10 9
33 33 H 1.09003 * 110.24816 * 78.39409 * 21 8 7
34 34 H 1.08998 * 110.47281 * 316.18159 * 21 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 6 2.0323 -0.7103 1.2305
5 7 1.7831 -0.3590 2.5088
6 1 1.2480 0.3963 2.7989
7 7 2.4322 -1.2774 3.3428
8 6 3.0504 -2.1518 2.5876
9 6 2.8143 -1.8162 1.2506
10 6 3.5161 -2.8071 0.3482
11 8 2.5823 -3.7577 -0.1684
12 6 4.2069 -2.0874 -0.7813
13 1 4.1136 -1.0155 -0.8759
14 6 4.9581 -2.7971 -1.6939
15 7 5.0714 -4.1023 -1.5791
16 14 5.8150 -1.9048 -3.0936
17 1 7.1768 -1.4992 -2.6620
18 1 5.9163 -2.8080 -4.2680
19 1 5.0329 -0.6978 -3.4635
20 6 4.5535 -3.5108 1.2486
21 6 3.9281 -3.3863 2.6543
22 1 -0.3634 0.5138 0.8899
23 1 -0.3634 0.5137 -0.8901
24 1 -0.3633 -1.0277 -0.0005
25 1 1.8934 -0.5138 -0.8899
26 1 3.1299 1.4426 0.0005
27 1 1.6766 1.9563 -0.8900
28 1 1.6766 1.9564 0.8900
29 1 2.9833 -4.4426 -0.7207
30 1 5.5996 -4.6017 -2.2213
31 1 4.6636 -4.5578 0.9661
32 1 5.5141 -2.9973 1.2057
33 1 3.3252 -4.2660 2.8800
34 1 4.7084 -3.2593 3.4046
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260672516.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:09:30
Heat of formation + Delta-G solvation = 14.068011 kcal
Electronic energy + Delta-G solvation = -17523.553836 eV
Core-core repulsion = 14843.565570 eV
Total energy + Delta-G solvation = -2679.988266 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-40.84234 -36.64324 -35.07362 -32.77879 -32.03327 -29.21409 -28.50919 -26.91417
-26.47274 -23.42810 -22.41127 -20.66803 -18.81460 -18.18350 -16.81949 -16.21049
-14.86698 -14.73341 -14.36850 -13.96675 -13.71955 -13.46106 -12.90876 -12.58172
-12.34347 -12.02370 -11.79455 -11.30780 -11.20772 -10.90092 -10.78623 -10.76430
-10.60972 -10.48173 -10.41206 -10.03685 -9.67427 -9.23708 -8.56062 -8.47620
-8.00897 -7.52287 -6.13974 -4.20055 2.57597 3.25083 3.32825 3.35497
3.43130 3.59391 4.36280 4.97995 5.06973 5.16348 5.23966 5.47847
5.76849 5.77778 5.95347 5.98793 6.09176 6.11834 6.26416 6.28313
6.37861 6.53384 6.54966 6.66518 6.82067 6.95534 7.24283 7.34642
7.53447 7.58737 7.88209 8.01925 8.26383 8.47200 8.81978 9.47125
9.61234 10.92515
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.021704 B = 0.011482 C = 0.008698
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1289.760216 B = 2438.031190 C = 3218.414352
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.032 4.032
3 C -0.143 4.143
4 C 0.105 3.895
5 N -0.486 5.486
6 H 0.428 0.572
7 N -0.301 5.301
8 C 0.052 3.948
9 C -0.193 4.193
10 C 0.320 3.680
11 O -0.587 6.587
12 C -0.524 4.524
13 H 0.060 0.940
14 C 0.069 3.931
15 N -0.899 5.899
16 Si 0.894 3.106
17 H -0.281 1.281
18 H -0.286 1.286
19 H -0.274 1.274
20 C -0.114 4.114
21 C -0.034 4.034
22 H 0.044 0.956
23 H 0.059 0.941
24 H 0.061 0.939
25 H 0.111 0.889
26 H 0.061 0.939
27 H 0.059 0.941
28 H 0.044 0.956
29 H 0.379 0.621
30 H 0.266 0.734
31 H 0.079 0.921
32 H 0.066 0.934
33 H 0.075 0.925
34 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.515 5.502 2.803 7.649
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.053 4.053
3 C -0.201 4.201
4 C -0.022 4.022
5 N -0.195 5.195
6 H 0.271 0.729
7 N -0.124 5.124
8 C -0.115 4.115
9 C -0.204 4.204
10 C 0.280 3.720
11 O -0.396 6.396
12 C -0.562 4.562
13 H 0.078 0.922
14 C -0.132 4.132
15 N -0.539 5.539
16 Si 0.722 3.278
17 H -0.207 1.207
18 H -0.212 1.212
19 H -0.198 1.198
20 C -0.153 4.153
21 C -0.074 4.074
22 H 0.063 0.937
23 H 0.078 0.922
24 H 0.080 0.920
25 H 0.129 0.871
26 H 0.080 0.920
27 H 0.078 0.922
28 H 0.063 0.937
29 H 0.229 0.771
30 H 0.076 0.924
31 H 0.097 0.903
32 H 0.085 0.915
33 H 0.093 0.907
34 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges -5.095 6.060 4.237 8.980
hybrid contribution 0.824 0.383 -1.672 1.903
sum -4.272 6.443 2.565 8.145
Atomic orbital electron populations
1.21826 0.94876 1.02277 1.01012 1.19857 0.94990 0.95199 0.95214
1.21831 1.02003 0.95223 1.01019 1.20015 0.99217 0.96751 0.86193
1.46121 1.44055 1.26099 1.03263 0.72901 1.76853 1.15807 1.03855
1.15912 1.23448 0.97619 0.96768 0.93652 1.20760 1.05158 0.98630
0.95845 1.17321 0.83008 0.83020 0.88649 1.86164 1.39222 1.43751
1.70479 1.21677 1.29618 0.94399 1.10544 0.92166 1.24992 0.95625
0.94957 0.97648 1.69683 1.41365 1.05842 1.37001 0.86554 0.79861
0.79660 0.81686 1.20672 1.21165 1.19848 1.22825 0.99360 1.02062
0.91009 1.20769 0.95499 0.90781 1.00305 0.93673 0.92206 0.92033
0.87100 0.91979 0.92194 0.93655 0.77078 0.92418 0.90291 0.91513
0.90655 0.91770
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.01 9.18 37.16 0.34 -1.67 16
2 C -0.03 -0.55 3.33 -91.77 -0.31 -0.86 16
3 C -0.14 -2.05 9.18 37.16 0.34 -1.71 16
4 C 0.10 2.10 5.72 -82.24 -0.47 1.63 16
5 N -0.49 -8.88 7.35 33.49 0.25 -8.64 16
6 H 0.43 6.13 8.96 -182.65 -1.64 4.49 16
7 N -0.30 -6.34 12.70 33.93 0.43 -5.91 16
8 C 0.05 1.16 8.11 -81.88 -0.66 0.49 16
9 C -0.19 -4.52 5.70 -104.72 -0.60 -5.11 16
10 C 0.32 8.01 0.90 -91.94 -0.08 7.92 16
11 O -0.59 -15.31 13.03 -35.23 -0.46 -15.77 16
12 C -0.52 -13.78 7.81 -34.44 -0.27 -14.05 16
13 H 0.06 1.59 7.36 -52.48 -0.39 1.20 16
14 C 0.07 1.79 5.26 -17.82 -0.09 1.70 16
15 N -0.90 -23.39 10.75 55.43 0.60 -22.80 16
16 Si 0.89 20.35 29.54 -169.99 -5.02 15.33 16
17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16
18 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16
19 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16
20 C -0.11 -2.62 5.32 -25.32 -0.13 -2.75 16
21 C -0.03 -0.69 6.79 -26.72 -0.18 -0.88 16
22 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16
23 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16
24 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16
25 H 0.11 2.20 7.33 -51.93 -0.38 1.82 16
26 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16
27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16
28 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16
29 H 0.38 9.81 7.30 45.56 0.33 10.14 16
30 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16
31 H 0.08 1.84 7.81 -51.93 -0.41 1.43 16
32 H 0.07 1.59 7.90 -51.93 -0.41 1.18 16
33 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16
34 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16
LS Contribution 282.09 15.07 4.25 4.25
Total: -1.00 -28.88 282.09 -7.48 -36.36
By element:
Atomic # 1 Polarization: 17.86 SS G_CDS: -5.40 Total: 12.46 kcal
Atomic # 6 Polarization: -13.17 SS G_CDS: -2.12 Total: -15.29 kcal
Atomic # 7 Polarization: -38.61 SS G_CDS: 1.27 Total: -37.34 kcal
Atomic # 8 Polarization: -15.31 SS G_CDS: -0.46 Total: -15.77 kcal
Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal
Total LS contribution 4.25 Total: 4.25 kcal
Total: -28.88 -7.48 -36.36 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260672516.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 50.429 kcal
(2) G-P(sol) polarization free energy of solvation -28.884 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.545 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.477 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.361 kcal
(6) G-S(sol) free energy of system = (1) + (5) 14.068 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds