Wall clock time and date at job start Mon Mar 30 2020 03:09:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53009 * 109.46879 * 2 1
4 4 C 1.50698 * 109.47148 * 119.99534 * 2 1 3
5 5 N 1.34887 * 126.11867 * 300.03625 * 4 2 1
6 6 H 0.97007 * 126.02476 * 0.02562 * 5 4 2
7 7 N 1.40016 * 107.94030 * 179.97438 * 5 4 2
8 8 C 1.31037 * 108.24630 * 359.97438 * 7 5 4
9 9 C 1.35461 * 126.11084 * 120.00015 * 4 2 1
10 10 C 1.51283 * 142.53127 * 0.05699 * 9 4 2
11 11 O 1.42908 * 110.37714 * 281.72644 * 10 9 4
12 12 C 1.50697 * 110.29595 * 43.81266 * 10 9 4
13 13 H 1.08005 * 120.00191 * 357.24510 * 12 10 9
14 14 C 1.37877 * 120.00262 * 177.24121 * 12 10 9
15 15 N 1.31519 * 119.99965 * 0.02562 * 14 12 10
16 16 Si 1.86800 * 120.00282 * 180.02562 * 14 12 10
17 17 H 1.48505 * 109.47052 * 89.99966 * 16 14 12
18 18 H 1.48498 * 109.47364 * 210.00589 * 16 14 12
19 19 H 1.48506 * 109.46931 * 330.00084 * 16 14 12
20 20 C 1.54343 * 105.21544 * 162.74942 * 10 9 4
21 21 C 1.51616 * 142.28569 * 179.74541 * 8 7 5
22 22 H 1.08994 * 109.47564 * 299.99959 * 1 2 3
23 23 H 1.09004 * 109.47184 * 60.00634 * 1 2 3
24 24 H 1.09006 * 109.47055 * 179.97438 * 1 2 3
25 25 H 1.08994 * 109.47564 * 240.00041 * 2 1 3
26 26 H 1.08999 * 109.46931 * 179.97438 * 3 2 1
27 27 H 1.08994 * 109.46777 * 299.99821 * 3 2 1
28 28 H 1.09000 * 109.46780 * 60.00067 * 3 2 1
29 29 H 0.96698 * 113.99788 * 182.70772 * 11 10 9
30 30 H 0.96998 * 120.00012 * 179.97438 * 15 14 12
31 31 H 1.09002 * 110.77143 * 144.82905 * 20 10 9
32 32 H 1.09004 * 110.76966 * 268.05221 * 20 10 9
33 33 H 1.09003 * 110.24816 * 78.39409 * 21 8 7
34 34 H 1.08998 * 110.47281 * 316.18159 * 21 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 6 2.0323 -0.7103 1.2305
5 7 1.7831 -0.3590 2.5088
6 1 1.2480 0.3963 2.7989
7 7 2.4322 -1.2774 3.3428
8 6 3.0504 -2.1518 2.5876
9 6 2.8143 -1.8162 1.2506
10 6 3.5161 -2.8071 0.3482
11 8 2.5823 -3.7577 -0.1684
12 6 4.2069 -2.0874 -0.7813
13 1 4.1136 -1.0155 -0.8759
14 6 4.9581 -2.7971 -1.6939
15 7 5.0714 -4.1023 -1.5791
16 14 5.8150 -1.9048 -3.0936
17 1 7.1768 -1.4992 -2.6620
18 1 5.9163 -2.8080 -4.2680
19 1 5.0329 -0.6978 -3.4635
20 6 4.5535 -3.5108 1.2486
21 6 3.9281 -3.3863 2.6543
22 1 -0.3634 0.5138 0.8899
23 1 -0.3634 0.5137 -0.8901
24 1 -0.3633 -1.0277 -0.0005
25 1 1.8934 -0.5138 -0.8899
26 1 3.1299 1.4426 0.0005
27 1 1.6766 1.9563 -0.8900
28 1 1.6766 1.9564 0.8900
29 1 2.9833 -4.4426 -0.7207
30 1 5.5996 -4.6017 -2.2213
31 1 4.6636 -4.5578 0.9661
32 1 5.5141 -2.9973 1.2057
33 1 3.3252 -4.2660 2.8800
34 1 4.7084 -3.2593 3.4046
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260672516.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:09:30
Heat of formation + Delta-G solvation = -5.639025 kcal
Electronic energy + Delta-G solvation = -17524.408397 eV
Core-core repulsion = 14843.565570 eV
Total energy + Delta-G solvation = -2680.842828 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-42.46621 -38.46739 -36.47838 -34.54810 -34.04932 -30.84464 -30.17064 -28.35635
-28.02926 -25.25750 -23.97855 -22.27496 -20.45403 -19.86953 -18.79389 -17.72870
-16.83589 -16.35451 -15.99582 -15.68838 -15.15156 -15.06565 -14.60297 -14.05269
-13.81471 -13.54850 -13.13130 -13.09725 -13.00348 -12.58537 -12.46945 -12.35234
-12.14366 -12.09653 -11.94228 -11.70212 -11.50324 -11.01298 -10.54085 -10.06010
-9.97365 -9.20910 -8.11016 -6.23785 0.97091 1.43224 1.45967 1.54337
1.86671 1.95736 2.45720 3.15785 3.32324 3.69588 3.98357 4.23393
4.25673 4.38276 4.55194 4.58161 4.63439 4.73428 4.83129 4.90745
4.92091 5.05910 5.12864 5.19354 5.33830 5.37512 5.51339 5.62491
5.67548 5.71944 5.91895 6.31790 6.56436 6.78018 6.86894 7.45531
7.58528 8.93704
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.021704 B = 0.011482 C = 0.008698
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1289.760216 B = 2438.031190 C = 3218.414352
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C -0.034 4.034
3 C -0.137 4.137
4 C 0.118 3.882
5 N -0.465 5.465
6 H 0.448 0.552
7 N -0.309 5.309
8 C 0.038 3.962
9 C -0.245 4.245
10 C 0.309 3.691
11 O -0.598 6.598
12 C -0.541 4.541
13 H 0.050 0.950
14 C 0.031 3.969
15 N -0.913 5.913
16 Si 0.950 3.050
17 H -0.279 1.279
18 H -0.282 1.282
19 H -0.272 1.272
20 C -0.106 4.106
21 C -0.027 4.027
22 H 0.069 0.931
23 H 0.084 0.916
24 H 0.040 0.960
25 H 0.075 0.925
26 H 0.040 0.960
27 H 0.083 0.917
28 H 0.070 0.930
29 H 0.374 0.626
30 H 0.268 0.732
31 H 0.069 0.931
32 H 0.051 0.949
33 H 0.087 0.913
34 H 0.089 0.911
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.270 7.173 3.079 9.418
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.193 4.193
2 C -0.054 4.054
3 C -0.194 4.194
4 C -0.010 4.010
5 N -0.176 5.176
6 H 0.295 0.705
7 N -0.132 5.132
8 C -0.128 4.128
9 C -0.256 4.256
10 C 0.269 3.731
11 O -0.406 6.406
12 C -0.579 4.579
13 H 0.068 0.932
14 C -0.169 4.169
15 N -0.553 5.553
16 Si 0.776 3.224
17 H -0.205 1.205
18 H -0.207 1.207
19 H -0.197 1.197
20 C -0.145 4.145
21 C -0.067 4.067
22 H 0.088 0.912
23 H 0.103 0.897
24 H 0.059 0.941
25 H 0.094 0.906
26 H 0.059 0.941
27 H 0.102 0.898
28 H 0.089 0.911
29 H 0.224 0.776
30 H 0.077 0.923
31 H 0.087 0.913
32 H 0.069 0.931
33 H 0.105 0.895
34 H 0.107 0.893
Dipole moment (debyes) X Y Z Total
from point charges -5.864 7.750 4.540 10.727
hybrid contribution 1.006 -0.098 -1.767 2.036
sum -4.858 7.652 2.773 9.478
Atomic orbital electron populations
1.21788 0.92242 1.01756 1.03513 1.19917 0.97088 0.96197 0.92244
1.21798 1.00644 0.93499 1.03508 1.20426 0.97385 0.95639 0.87594
1.46056 1.43181 1.25959 1.02371 0.70500 1.76784 1.16107 1.04082
1.16241 1.23671 0.98234 0.97523 0.93383 1.20913 1.08075 1.00523
0.96087 1.17473 0.83452 0.83265 0.88882 1.86157 1.40027 1.43944
1.70514 1.21835 1.30324 0.94077 1.11703 0.93195 1.25606 0.96127
0.95683 0.99496 1.69759 1.41503 1.06559 1.37497 0.85686 0.78783
0.78704 0.79216 1.20451 1.20715 1.19653 1.22609 0.98356 1.00865
0.92692 1.20707 0.96055 0.90827 0.99070 0.91186 0.89735 0.94060
0.90614 0.94100 0.89805 0.91110 0.77623 0.92277 0.91251 0.93059
0.89490 0.89300
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.49 9.18 71.98 0.66 -2.83 16
2 C -0.03 -1.11 3.33 -11.54 -0.04 -1.15 16
3 C -0.14 -3.58 9.18 71.99 0.66 -2.92 16
4 C 0.12 4.63 5.72 41.45 0.24 4.86 16
5 N -0.46 -15.99 7.35 -47.95 -0.35 -16.34 16
6 H 0.45 11.35 8.96 -213.37 -1.91 9.44 16
7 N -0.31 -12.50 12.70 -46.57 -0.59 -13.10 16
8 C 0.04 1.67 8.11 43.36 0.35 2.03 16
9 C -0.24 -11.52 5.70 -19.93 -0.11 -11.63 16
10 C 0.31 15.81 0.90 -11.65 -0.01 15.80 16
11 O -0.60 -32.10 13.03 -148.98 -1.94 -34.04 16
12 C -0.54 -29.12 7.81 25.60 0.20 -28.92 16
13 H 0.05 2.71 7.36 -2.91 -0.02 2.69 16
14 C 0.03 1.61 5.26 84.65 0.44 2.06 16
15 N -0.91 -48.25 10.75 21.45 0.23 -48.02 16
16 Si 0.95 41.96 29.54 68.60 2.03 43.99 16
17 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16
18 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16
19 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16
20 C -0.11 -5.00 5.32 31.51 0.17 -4.83 16
21 C -0.03 -1.10 6.79 30.60 0.21 -0.90 16
22 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16
23 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16
24 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16
25 H 0.08 3.05 7.33 -2.39 -0.02 3.03 16
26 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16
27 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16
28 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16
29 H 0.37 20.08 7.30 -74.06 -0.54 19.54 16
30 H 0.27 13.50 8.31 -92.71 -0.77 12.73 16
31 H 0.07 3.32 7.81 -2.39 -0.02 3.30 16
32 H 0.05 2.50 7.90 -2.38 -0.02 2.48 16
33 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16
34 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16
Total: -1.00 -62.38 282.09 0.80 -61.58
By element:
Atomic # 1 Polarization: 35.69 SS G_CDS: -1.33 Total: 34.36 kcal
Atomic # 6 Polarization: -31.19 SS G_CDS: 2.77 Total: -28.43 kcal
Atomic # 7 Polarization: -76.74 SS G_CDS: -0.71 Total: -77.46 kcal
Atomic # 8 Polarization: -32.10 SS G_CDS: -1.94 Total: -34.04 kcal
Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal
Total: -62.38 0.80 -61.58 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260672516.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 55.939 kcal
(2) G-P(sol) polarization free energy of solvation -62.382 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.443 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.804 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.578 kcal
(6) G-S(sol) free energy of system = (1) + (5) -5.639 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds