Wall clock time and date at job start Mon Mar 30 2020 03:12:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42904 * 1
3 3 C 1.35272 * 116.99844 * 2 1
4 4 N 1.32568 * 120.68621 * 359.97438 * 3 2 1
5 5 C 1.31870 * 120.99349 * 180.02562 * 4 3 2
6 6 N 1.32041 * 122.45612 * 359.97438 * 5 4 3
7 7 C 1.32021 * 121.25101 * 359.69949 * 6 5 4
8 8 C 1.50702 * 120.58051 * 180.28956 * 7 6 5
9 9 C 1.53000 * 109.47232 * 233.30447 * 8 7 6
10 10 C 1.52995 * 109.47463 * 353.30481 * 8 7 6
11 11 C 1.53003 * 109.47088 * 113.30611 * 8 7 6
12 12 C 1.40915 * 118.83260 * 0.57104 * 7 6 5
13 13 C 1.41178 * 121.08302 * 179.71334 * 12 7 6
14 14 H 1.08003 * 119.99440 * 46.26510 * 13 12 7
15 15 C 1.39954 * 120.00225 * 225.99094 * 13 12 7
16 16 N 1.30845 * 120.00090 * 11.72623 * 15 13 12
17 17 Si 1.86806 * 119.99799 * 191.72617 * 15 13 12
18 18 H 1.48494 * 109.47276 * 0.02562 * 17 15 13
19 19 H 1.48506 * 109.46824 * 119.99970 * 17 15 13
20 20 H 1.48498 * 109.47044 * 240.00062 * 17 15 13
21 21 H 1.08998 * 109.46823 * 179.97438 * 1 2 3
22 22 H 1.09002 * 109.46869 * 299.99225 * 1 2 3
23 23 H 1.09002 * 109.47071 * 59.99539 * 1 2 3
24 24 H 1.07997 * 118.76999 * 180.02562 * 5 4 3
25 25 H 1.09006 * 109.47264 * 52.04563 * 9 8 7
26 26 H 1.08996 * 109.47683 * 172.05483 * 9 8 7
27 27 H 1.09002 * 109.46990 * 292.05526 * 9 8 7
28 28 H 1.09003 * 109.46804 * 59.99898 * 10 8 7
29 29 H 1.08995 * 109.47243 * 179.97438 * 10 8 7
30 30 H 1.09001 * 109.47201 * 300.00363 * 10 8 7
31 31 H 1.08999 * 109.47190 * 77.00715 * 11 8 7
32 32 H 1.08994 * 109.47258 * 197.00653 * 11 8 7
33 33 H 1.09004 * 109.47024 * 317.00913 * 11 8 7
34 34 H 0.97002 * 120.00408 * 179.97438 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0431 1.2053 0.0000
4 7 1.3344 2.3257 -0.0005
5 6 1.9268 3.5038 -0.0010
6 7 3.2405 3.6365 -0.0006
7 6 4.0353 2.5823 0.0064
8 6 5.5328 2.7513 0.0134
9 6 6.1420 1.9487 -1.1380
10 6 5.8799 4.2315 -0.1572
11 6 6.0970 2.2451 1.3424
12 6 3.4588 1.2965 0.0011
13 6 4.2639 0.1368 0.0020
14 1 5.1001 0.0605 0.6814
15 6 3.9750 -0.9164 -0.8733
16 7 3.1139 -0.7435 -1.8431
17 14 4.8188 -2.5689 -0.6568
18 1 5.7408 -2.5055 0.5056
19 1 3.7963 -3.6195 -0.4203
20 1 5.5897 -2.8955 -1.8833
21 1 -0.3633 -1.0277 -0.0005
22 1 -0.3633 0.5137 0.8901
23 1 -0.3633 0.5139 -0.8900
24 1 1.3145 4.3935 -0.0010
25 1 5.6391 2.2099 -2.0691
26 1 7.2038 2.1807 -1.2209
27 1 6.0171 0.8833 -0.9442
28 1 5.4460 4.8033 0.6630
29 1 6.9630 4.3537 -0.1517
30 1 5.4780 4.5922 -1.1041
31 1 6.1226 1.1554 1.3348
32 1 7.1070 2.6313 1.4791
33 1 5.4631 2.5879 2.1603
34 1 2.9139 -1.4733 -2.4501
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260681512.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:12:34
Heat of formation + Delta-G solvation = -7.052714 kcal
Electronic energy + Delta-G solvation = -17659.730133 eV
Core-core repulsion = 14978.826003 eV
Total energy + Delta-G solvation = -2680.904130 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-39.62381 -37.25536 -35.73882 -33.67022 -31.07393 -30.16701 -26.93698 -26.40106
-26.12183 -25.44177 -22.31785 -21.96666 -18.88385 -17.54757 -16.80544 -15.93513
-15.14330 -14.65800 -14.13231 -13.69797 -13.45536 -13.37993 -12.89937 -12.65079
-12.54342 -11.77176 -11.61790 -11.32089 -11.27903 -11.17012 -10.95490 -10.63356
-10.53827 -10.39509 -10.25045 -10.06613 -9.76623 -9.24188 -9.08228 -8.57755
-7.87834 -7.22871 -6.72440 -4.38562 2.53412 2.80036 3.10058 3.11377
3.14495 3.97697 4.39396 4.75463 5.35540 5.41414 5.57753 5.75966
5.91713 6.01662 6.05306 6.10158 6.28322 6.31187 6.38411 6.49505
6.54167 6.64956 6.70680 6.75534 6.93219 6.95746 7.12550 7.19515
7.27300 7.47202 7.68438 8.16237 8.29028 8.52444 8.79095 8.99039
9.71902 10.28410
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.019037 B = 0.014525 C = 0.009104
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1470.466587 B = 1927.182662 C = 3074.979350
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.045 3.955
2 O -0.270 6.270
3 C 0.299 3.701
4 N -0.575 5.575
5 C 0.193 3.807
6 N -0.519 5.519
7 C 0.079 3.921
8 C 0.013 3.987
9 C -0.140 4.140
10 C -0.120 4.120
11 C -0.137 4.137
12 C 0.033 3.967
13 C -0.453 4.453
14 H 0.092 0.908
15 C 0.084 3.916
16 N -0.784 5.784
17 Si 0.903 3.097
18 H -0.260 1.260
19 H -0.274 1.274
20 H -0.276 1.276
21 H 0.075 0.925
22 H 0.040 0.960
23 H 0.044 0.956
24 H 0.161 0.839
25 H 0.043 0.957
26 H 0.036 0.964
27 H 0.090 0.910
28 H 0.053 0.947
29 H 0.039 0.961
30 H 0.050 0.950
31 H 0.069 0.931
32 H 0.045 0.955
33 H 0.045 0.955
34 H 0.279 0.721
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.123 0.553 2.028 2.988
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.052 4.052
2 O -0.173 6.173
3 C 0.108 3.892
4 N -0.306 5.306
5 C -0.092 4.092
6 N -0.236 5.236
7 C -0.066 4.066
8 C 0.012 3.988
9 C -0.198 4.198
10 C -0.177 4.177
11 C -0.195 4.195
12 C 0.026 3.974
13 C -0.484 4.484
14 H 0.110 0.890
15 C -0.135 4.135
16 N -0.410 5.410
17 Si 0.728 3.272
18 H -0.184 1.184
19 H -0.199 1.199
20 H -0.202 1.202
21 H 0.094 0.906
22 H 0.059 0.941
23 H 0.063 0.937
24 H 0.178 0.822
25 H 0.062 0.938
26 H 0.055 0.945
27 H 0.109 0.891
28 H 0.072 0.928
29 H 0.058 0.942
30 H 0.069 0.931
31 H 0.088 0.912
32 H 0.064 0.936
33 H 0.064 0.936
34 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges 1.534 0.980 1.819 2.573
hybrid contribution 0.174 -1.398 -0.150 1.416
sum 1.708 -0.417 1.669 2.424
Atomic orbital electron populations
1.22533 0.81220 1.00743 1.00669 1.86314 1.18939 1.24688 1.87404
1.20666 0.89780 0.83264 0.95482 1.67461 1.42821 0.99546 1.20786
1.23309 0.88284 0.92637 1.04927 1.67484 1.05633 1.35304 1.15137
1.21241 0.94435 0.87343 1.03541 1.18918 0.89202 0.95043 0.95654
1.21941 0.97334 1.03511 0.96989 1.21631 0.98484 0.95657 1.01955
1.21948 0.98965 1.02229 0.96332 1.18087 0.89264 0.94629 0.95462
1.19189 1.12508 0.98409 1.18320 0.89021 1.25691 0.94258 0.99555
0.94008 1.69686 1.26758 1.33259 1.11252 0.86341 0.79745 0.81967
0.79173 1.18411 1.19904 1.20158 0.90607 0.94110 0.93735 0.82167
0.93751 0.94501 0.89134 0.92803 0.94232 0.93073 0.91228 0.93554
0.93618 0.91045
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.05 0.90 10.41 101.05 1.05 1.95 16
2 O -0.27 -6.74 8.00 -17.51 -0.14 -6.88 16
3 C 0.30 7.79 7.00 -15.85 -0.11 7.68 16
4 N -0.58 -14.27 9.37 -14.02 -0.13 -14.40 16
5 C 0.19 4.51 12.26 -91.88 -1.13 3.38 16
6 N -0.52 -12.34 9.17 -10.22 -0.09 -12.44 16
7 C 0.08 1.89 5.55 -81.50 -0.45 1.43 16
8 C 0.01 0.26 0.75 -155.66 -0.12 0.14 16
9 C -0.14 -2.79 7.94 37.16 0.29 -2.50 16
10 C -0.12 -2.17 7.66 37.16 0.28 -1.89 16
11 C -0.14 -2.51 8.32 37.16 0.31 -2.20 16
12 C 0.03 0.84 5.13 -106.38 -0.55 0.29 16
13 C -0.45 -11.15 5.29 -37.82 -0.20 -11.35 16
14 H 0.09 2.14 4.94 -52.48 -0.26 1.88 16
15 C 0.08 2.02 4.73 -17.33 -0.08 1.94 16
16 N -0.78 -20.08 11.41 55.55 0.63 -19.44 16
17 Si 0.90 18.38 29.58 -169.99 -5.03 13.35 16
18 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16
19 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16
20 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16
21 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16
22 H 0.04 0.77 8.12 -51.93 -0.42 0.35 16
23 H 0.04 0.90 8.12 -51.93 -0.42 0.47 16
24 H 0.16 3.18 8.06 -52.49 -0.42 2.76 16
25 H 0.04 0.94 8.13 -51.93 -0.42 0.52 16
26 H 0.04 0.62 8.13 -51.93 -0.42 0.20 16
27 H 0.09 1.93 5.09 -51.93 -0.26 1.66 16
28 H 0.05 0.98 7.99 -51.93 -0.41 0.57 16
29 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16
30 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16
31 H 0.07 1.30 5.30 -51.93 -0.27 1.03 16
32 H 0.05 0.72 8.02 -51.93 -0.42 0.30 16
33 H 0.04 0.85 8.02 -51.93 -0.42 0.44 16
34 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16
LS Contribution 276.52 15.07 4.17 4.17
Total: -1.00 -27.98 276.52 -5.84 -33.83
By element:
Atomic # 1 Polarization: 7.48 SS G_CDS: -4.56 Total: 2.93 kcal
Atomic # 6 Polarization: -0.41 SS G_CDS: -0.69 Total: -1.11 kcal
Atomic # 7 Polarization: -46.69 SS G_CDS: 0.41 Total: -46.28 kcal
Atomic # 8 Polarization: -6.74 SS G_CDS: -0.14 Total: -6.88 kcal
Atomic # 14 Polarization: 18.38 SS G_CDS: -5.03 Total: 13.35 kcal
Total LS contribution 4.17 Total: 4.17 kcal
Total: -27.98 -5.84 -33.83 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260681512.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 26.772 kcal
(2) G-P(sol) polarization free energy of solvation -27.981 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.209 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.844 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.825 kcal
(6) G-S(sol) free energy of system = (1) + (5) -7.053 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds