Wall clock time and date at job start Mon Mar 30 2020 03:12:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42904 * 1
3 3 C 1.35272 * 116.99844 * 2 1
4 4 N 1.32568 * 120.68621 * 359.97438 * 3 2 1
5 5 C 1.31870 * 120.99349 * 180.02562 * 4 3 2
6 6 N 1.32041 * 122.45612 * 359.97438 * 5 4 3
7 7 C 1.32021 * 121.25101 * 359.69949 * 6 5 4
8 8 C 1.50702 * 120.58051 * 180.28956 * 7 6 5
9 9 C 1.53000 * 109.47232 * 233.30447 * 8 7 6
10 10 C 1.52995 * 109.47463 * 353.30481 * 8 7 6
11 11 C 1.53003 * 109.47088 * 113.30611 * 8 7 6
12 12 C 1.40915 * 118.83260 * 0.57104 * 7 6 5
13 13 C 1.41178 * 121.08302 * 179.71334 * 12 7 6
14 14 H 1.08003 * 119.99440 * 46.26510 * 13 12 7
15 15 C 1.39954 * 120.00225 * 225.99094 * 13 12 7
16 16 N 1.30845 * 120.00090 * 11.72623 * 15 13 12
17 17 Si 1.86806 * 119.99799 * 191.72617 * 15 13 12
18 18 H 1.48494 * 109.47276 * 0.02562 * 17 15 13
19 19 H 1.48506 * 109.46824 * 119.99970 * 17 15 13
20 20 H 1.48498 * 109.47044 * 240.00062 * 17 15 13
21 21 H 1.08998 * 109.46823 * 179.97438 * 1 2 3
22 22 H 1.09002 * 109.46869 * 299.99225 * 1 2 3
23 23 H 1.09002 * 109.47071 * 59.99539 * 1 2 3
24 24 H 1.07997 * 118.76999 * 180.02562 * 5 4 3
25 25 H 1.09006 * 109.47264 * 52.04563 * 9 8 7
26 26 H 1.08996 * 109.47683 * 172.05483 * 9 8 7
27 27 H 1.09002 * 109.46990 * 292.05526 * 9 8 7
28 28 H 1.09003 * 109.46804 * 59.99898 * 10 8 7
29 29 H 1.08995 * 109.47243 * 179.97438 * 10 8 7
30 30 H 1.09001 * 109.47201 * 300.00363 * 10 8 7
31 31 H 1.08999 * 109.47190 * 77.00715 * 11 8 7
32 32 H 1.08994 * 109.47258 * 197.00653 * 11 8 7
33 33 H 1.09004 * 109.47024 * 317.00913 * 11 8 7
34 34 H 0.97002 * 120.00408 * 179.97438 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0431 1.2053 0.0000
4 7 1.3344 2.3257 -0.0005
5 6 1.9268 3.5038 -0.0010
6 7 3.2405 3.6365 -0.0006
7 6 4.0353 2.5823 0.0064
8 6 5.5328 2.7513 0.0134
9 6 6.1420 1.9487 -1.1380
10 6 5.8799 4.2315 -0.1572
11 6 6.0970 2.2451 1.3424
12 6 3.4588 1.2965 0.0011
13 6 4.2639 0.1368 0.0020
14 1 5.1001 0.0605 0.6814
15 6 3.9750 -0.9164 -0.8733
16 7 3.1139 -0.7435 -1.8431
17 14 4.8188 -2.5689 -0.6568
18 1 5.7408 -2.5055 0.5056
19 1 3.7963 -3.6195 -0.4203
20 1 5.5897 -2.8955 -1.8833
21 1 -0.3633 -1.0277 -0.0005
22 1 -0.3633 0.5137 0.8901
23 1 -0.3633 0.5139 -0.8900
24 1 1.3145 4.3935 -0.0010
25 1 5.6391 2.2099 -2.0691
26 1 7.2038 2.1807 -1.2209
27 1 6.0171 0.8833 -0.9442
28 1 5.4460 4.8033 0.6630
29 1 6.9630 4.3537 -0.1517
30 1 5.4780 4.5922 -1.1041
31 1 6.1226 1.1554 1.3348
32 1 7.1070 2.6313 1.4791
33 1 5.4631 2.5879 2.1603
34 1 2.9139 -1.4733 -2.4501
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260681512.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:12:34
Heat of formation + Delta-G solvation = -23.850469 kcal
Electronic energy + Delta-G solvation = -17660.458538 eV
Core-core repulsion = 14978.826003 eV
Total energy + Delta-G solvation = -2681.632535 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-41.43846 -39.01780 -37.43653 -35.46363 -32.90573 -31.98635 -28.56549 -27.90315
-27.78672 -27.15173 -24.10678 -23.80562 -20.55687 -19.39155 -18.60758 -17.68497
-16.92583 -16.43683 -15.81239 -15.36296 -15.12318 -15.07034 -14.54014 -14.31693
-14.23372 -13.51104 -13.15043 -12.97647 -12.81458 -12.72035 -12.59757 -12.23076
-12.15300 -12.07344 -11.84249 -11.65727 -11.35001 -11.04698 -10.89240 -10.41081
-9.74811 -9.09297 -8.52919 -6.25181 0.69279 0.90996 1.45716 1.49111
1.57774 2.28884 2.65361 2.94079 3.56688 3.70156 3.80913 4.17823
4.37205 4.44323 4.49309 4.51517 4.68883 4.74820 4.92840 4.97742
4.98170 5.08782 5.13632 5.18626 5.29254 5.39565 5.44177 5.48092
5.68478 5.82089 5.95386 6.33763 6.44860 6.67878 6.95572 7.13686
7.84564 8.50030
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.019037 B = 0.014525 C = 0.009104
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1470.466587 B = 1927.182662 C = 3074.979350
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.044 3.956
2 O -0.290 6.290
3 C 0.272 3.728
4 N -0.583 5.583
5 C 0.184 3.816
6 N -0.526 5.526
7 C 0.074 3.926
8 C 0.006 3.994
9 C -0.132 4.132
10 C -0.111 4.111
11 C -0.130 4.130
12 C 0.001 3.999
13 C -0.461 4.461
14 H 0.100 0.900
15 C 0.047 3.953
16 N -0.821 5.821
17 Si 0.966 3.034
18 H -0.250 1.250
19 H -0.277 1.277
20 H -0.270 1.270
21 H 0.106 0.894
22 H 0.047 0.953
23 H 0.036 0.964
24 H 0.193 0.807
25 H 0.018 0.982
26 H 0.071 0.929
27 H 0.074 0.926
28 H 0.049 0.951
29 H 0.072 0.928
30 H 0.036 0.964
31 H 0.061 0.939
32 H 0.080 0.920
33 H 0.034 0.966
34 H 0.281 0.719
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.573 0.457 2.582 4.432
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.052 4.052
2 O -0.194 6.194
3 C 0.082 3.918
4 N -0.315 5.315
5 C -0.101 4.101
6 N -0.243 5.243
7 C -0.071 4.071
8 C 0.005 3.995
9 C -0.190 4.190
10 C -0.169 4.169
11 C -0.187 4.187
12 C -0.006 4.006
13 C -0.492 4.492
14 H 0.117 0.883
15 C -0.168 4.168
16 N -0.448 5.448
17 Si 0.788 3.212
18 H -0.173 1.173
19 H -0.202 1.202
20 H -0.196 1.196
21 H 0.124 0.876
22 H 0.066 0.934
23 H 0.055 0.945
24 H 0.209 0.791
25 H 0.038 0.962
26 H 0.090 0.910
27 H 0.093 0.907
28 H 0.068 0.932
29 H 0.091 0.909
30 H 0.056 0.944
31 H 0.080 0.920
32 H 0.099 0.901
33 H 0.054 0.946
34 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges 2.975 0.888 2.381 3.913
hybrid contribution -0.335 -1.277 -0.328 1.360
sum 2.640 -0.390 2.054 3.367
Atomic orbital electron populations
1.22736 0.79178 1.02756 1.00550 1.86258 1.21133 1.24590 1.87421
1.20993 0.90487 0.83813 0.96493 1.67503 1.43009 0.99766 1.21177
1.24039 0.88842 0.93340 1.03829 1.67601 1.05827 1.35228 1.15598
1.21956 0.96496 0.86910 1.01710 1.19133 0.86919 0.96664 0.96828
1.21847 0.99137 1.02390 0.95576 1.21561 1.00541 0.93793 1.00993
1.21870 1.00504 1.01720 0.94621 1.18513 0.89678 0.95871 0.96534
1.19367 1.12693 0.98624 1.18526 0.88276 1.26429 0.94580 1.02493
0.93304 1.69773 1.28467 1.34276 1.12239 0.85382 0.78750 0.77539
0.79511 1.17283 1.20228 1.19561 0.87557 0.93445 0.94516 0.79076
0.96238 0.91023 0.90702 0.93210 0.90926 0.94437 0.92020 0.90115
0.94639 0.90864
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 1.74 10.41 113.37 1.18 2.92 16
2 O -0.29 -14.65 8.00 -85.57 -0.68 -15.33 16
3 C 0.27 14.38 7.00 85.48 0.60 14.98 16
4 N -0.58 -29.15 9.37 -311.21 -2.92 -32.06 16
5 C 0.18 8.54 12.26 180.79 2.22 10.76 16
6 N -0.53 -24.83 9.17 -186.26 -1.71 -26.54 16
7 C 0.07 3.54 5.55 43.19 0.24 3.78 16
8 C 0.01 0.21 0.75 -52.93 -0.04 0.17 16
9 C -0.13 -5.07 7.94 71.98 0.57 -4.49 16
10 C -0.11 -3.78 7.66 71.98 0.55 -3.23 16
11 C -0.13 -4.44 8.32 71.98 0.60 -3.84 16
12 C 0.00 0.05 5.13 -21.00 -0.11 -0.05 16
13 C -0.46 -22.71 5.29 23.41 0.12 -22.58 16
14 H 0.10 4.59 4.94 -2.91 -0.01 4.57 16
15 C 0.05 2.28 4.73 85.26 0.40 2.68 16
16 N -0.82 -42.58 11.41 21.83 0.25 -42.33 16
17 Si 0.97 37.22 29.58 68.60 2.03 39.25 16
18 H -0.25 -9.09 7.11 99.48 0.71 -8.38 16
19 H -0.28 -10.72 7.11 99.48 0.71 -10.02 16
20 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16
21 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16
22 H 0.05 1.79 8.12 -2.39 -0.02 1.77 16
23 H 0.04 1.49 8.12 -2.39 -0.02 1.47 16
24 H 0.19 7.36 8.06 -2.91 -0.02 7.34 16
25 H 0.02 0.80 8.13 -2.38 -0.02 0.78 16
26 H 0.07 2.20 8.13 -2.39 -0.02 2.18 16
27 H 0.07 3.11 5.09 -2.39 -0.01 3.10 16
28 H 0.05 1.71 7.99 -2.39 -0.02 1.69 16
29 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16
30 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16
31 H 0.06 2.20 5.30 -2.39 -0.01 2.19 16
32 H 0.08 2.19 8.02 -2.39 -0.02 2.17 16
33 H 0.03 1.26 8.02 -2.38 -0.02 1.24 16
34 H 0.28 13.54 8.30 -92.71 -0.77 12.77 16
Total: -1.00 -60.08 276.52 4.40 -55.68
By element:
Atomic # 1 Polarization: 19.13 SS G_CDS: 1.10 Total: 20.23 kcal
Atomic # 6 Polarization: -5.24 SS G_CDS: 6.34 Total: 1.10 kcal
Atomic # 7 Polarization: -96.55 SS G_CDS: -4.37 Total: -100.93 kcal
Atomic # 8 Polarization: -14.65 SS G_CDS: -0.68 Total: -15.33 kcal
Atomic # 14 Polarization: 37.22 SS G_CDS: 2.03 Total: 39.25 kcal
Total: -60.08 4.40 -55.68 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260681512.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 31.827 kcal
(2) G-P(sol) polarization free energy of solvation -60.079 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.252 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.402 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.677 kcal
(6) G-S(sol) free energy of system = (1) + (5) -23.850 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds