Wall clock time and date at job start Mon Mar 30 2020 03:12:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53007 * 1
3 3 C 1.53001 * 109.46667 * 2 1
4 4 C 1.52999 * 109.46780 * 120.00127 * 2 1 3
5 5 C 1.50691 * 109.47222 * 65.00177 * 4 2 1
6 6 C 1.38234 * 120.82883 * 265.01824 * 5 4 2
7 7 N 1.32486 * 119.18175 * 179.71002 * 6 5 4
8 8 C 1.31792 * 120.95908 * 0.54892 * 7 6 5
9 9 C 1.50700 * 119.08922 * 179.71827 * 8 7 6
10 10 C 1.50702 * 109.46869 * 269.72508 * 9 8 7
11 11 H 1.08002 * 120.00299 * 0.02562 * 10 9 8
12 12 C 1.37884 * 119.99942 * 179.72213 * 10 9 8
13 13 N 1.31514 * 119.99985 * 180.27663 * 12 10 9
14 14 Si 1.86800 * 119.99777 * 0.28166 * 12 10 9
15 15 H 1.48498 * 109.47109 * 89.99834 * 14 12 10
16 16 H 1.48507 * 109.46754 * 209.99574 * 14 12 10
17 17 H 1.48498 * 109.47278 * 329.99405 * 14 12 10
18 18 N 1.31757 * 121.81635 * 359.43420 * 8 7 6
19 19 C 1.32825 * 120.72031 * 0.28043 * 18 8 7
20 20 O 1.35517 * 120.51523 * 180.02562 * 19 18 8
21 21 H 1.09000 * 109.47016 * 179.97438 * 1 2 3
22 22 H 1.09001 * 109.46974 * 300.00025 * 1 2 3
23 23 H 1.09003 * 109.47288 * 59.99746 * 1 2 3
24 24 H 1.09001 * 109.46974 * 239.99975 * 2 1 3
25 25 H 1.09008 * 109.46279 * 179.97438 * 3 2 1
26 26 H 1.08996 * 109.47248 * 299.99529 * 3 2 1
27 27 H 1.09001 * 109.47033 * 60.00610 * 3 2 1
28 28 H 1.09001 * 109.47061 * 304.99486 * 4 2 1
29 29 H 1.09009 * 109.46484 * 185.00139 * 4 2 1
30 30 H 1.08009 * 120.40448 * 359.97438 * 6 5 4
31 31 H 1.09004 * 109.47210 * 149.72801 * 9 8 7
32 32 H 1.08994 * 109.47551 * 29.72454 * 9 8 7
33 33 H 0.96996 * 119.99730 * 180.02562 * 13 12 10
34 34 H 0.96701 * 113.99671 * 90.00203 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7213 1.2492
5 6 1.6413 -2.1733 1.1888
6 6 0.4895 -2.6181 1.8104
7 7 0.1671 -3.9007 1.7316
8 6 0.9326 -4.7535 1.0807
9 6 0.5289 -6.2042 1.0231
10 6 1.1327 -6.9404 2.1913
11 1 1.7469 -6.4106 2.9044
12 6 0.8957 -8.2890 2.3532
13 7 1.4182 -8.9303 3.3757
14 14 -0.1672 -9.2052 1.1202
15 1 0.6880 -9.7394 0.0300
16 1 -0.8594 -10.3285 1.8018
17 1 -1.1751 -8.2763 0.5489
18 7 2.0383 -4.3716 0.4744
19 6 2.4246 -3.1011 0.5044
20 8 3.5623 -2.7128 -0.1211
21 1 -0.3633 -1.0277 -0.0005
22 1 -0.3633 0.5138 0.8900
23 1 -0.3634 0.5139 -0.8900
24 1 1.8934 -0.5138 -0.8900
25 1 3.1300 1.4425 0.0005
26 1 1.6767 1.9563 -0.8900
27 1 1.6767 1.9563 0.8900
28 1 1.6054 -0.2617 2.1370
29 1 3.1264 -0.6443 1.2951
30 1 -0.1420 -1.9277 2.3500
31 1 0.8867 -6.6443 0.0922
32 1 -0.5574 -6.2812 1.0674
33 1 1.2518 -9.8791 3.4894
34 1 3.4331 -2.4430 -1.0406
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260725824.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:12:55
Heat of formation + Delta-G solvation = -41.687377 kcal
Electronic energy + Delta-G solvation = -16430.339184 eV
Core-core repulsion = 13747.933182 eV
Total energy + Delta-G solvation = -2682.406001 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-42.25509 -38.77953 -37.52914 -35.40245 -34.18123 -33.23313 -31.20640 -28.02021
-27.51234 -25.20539 -24.97229 -22.78216 -21.04138 -19.75127 -19.10017 -18.87704
-17.23579 -16.35023 -16.23884 -15.82772 -15.31868 -15.07181 -14.90773 -14.64163
-14.08243 -13.79226 -13.64150 -13.09609 -13.01393 -12.89961 -12.66165 -12.46951
-12.07142 -12.03728 -11.79858 -11.69092 -11.56794 -11.53643 -11.21622 -10.81736
-10.20821 -9.91605 -8.33395 -6.40689 -0.11918 0.10775 1.38362 1.41352
1.53170 2.35016 2.40890 2.70675 3.00665 3.20240 3.52319 3.70790
3.85722 4.06085 4.17277 4.27314 4.50637 4.54426 4.75988 4.86029
4.87529 4.93647 5.02974 5.07926 5.12579 5.18394 5.26628 5.40018
5.47262 5.48047 5.51944 6.02888 6.16439 6.51750 6.59732 7.20938
7.22440 8.83796
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.047042 B = 0.005502 C = 0.005350
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 595.069910 B = 5087.979815 C = 5232.677486
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.086 4.086
3 C -0.142 4.142
4 C -0.055 4.055
5 C -0.204 4.204
6 C 0.154 3.846
7 N -0.543 5.543
8 C 0.355 3.645
9 C 0.052 3.948
10 C -0.521 4.521
11 H 0.015 0.985
12 C 0.012 3.988
13 N -0.947 5.947
14 Si 0.958 3.042
15 H -0.262 1.262
16 H -0.277 1.277
17 H -0.241 1.241
18 N -0.567 5.567
19 C 0.343 3.657
20 O -0.476 6.476
21 H 0.035 0.965
22 H 0.068 0.932
23 H 0.061 0.939
24 H 0.063 0.937
25 H 0.058 0.942
26 H 0.062 0.938
27 H 0.062 0.938
28 H 0.094 0.906
29 H 0.081 0.919
30 H 0.202 0.798
31 H 0.047 0.953
32 H 0.055 0.945
33 H 0.271 0.729
34 H 0.420 0.580
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.072 21.156 -9.638 23.340
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.104 4.104
3 C -0.199 4.199
4 C -0.093 4.093
5 C -0.210 4.210
6 C -0.011 4.011
7 N -0.258 5.258
8 C 0.089 3.911
9 C 0.013 3.987
10 C -0.559 4.559
11 H 0.034 0.966
12 C -0.185 4.185
13 N -0.587 5.587
14 Si 0.779 3.221
15 H -0.187 1.187
16 H -0.202 1.202
17 H -0.164 1.164
18 N -0.292 5.292
19 C 0.156 3.844
20 O -0.286 6.286
21 H 0.054 0.946
22 H 0.087 0.913
23 H 0.080 0.920
24 H 0.082 0.918
25 H 0.078 0.922
26 H 0.081 0.919
27 H 0.081 0.919
28 H 0.112 0.888
29 H 0.100 0.900
30 H 0.218 0.782
31 H 0.065 0.935
32 H 0.073 0.927
33 H 0.080 0.920
34 H 0.282 0.718
Dipole moment (debyes) X Y Z Total
from point charges -2.004 19.986 -9.112 22.056
hybrid contribution 0.171 -0.059 -0.370 0.412
sum -1.833 19.926 -9.482 22.143
Atomic orbital electron populations
1.21914 0.95091 1.00990 1.02790 1.21039 0.96002 0.96758 0.96639
1.21794 1.01246 0.94332 1.02536 1.20531 1.02100 0.86442 1.00224
1.21923 0.96399 0.99593 1.03040 1.23733 0.93525 0.91277 0.92530
1.68307 1.35035 1.04509 1.17953 1.23088 0.84618 0.97181 0.86167
1.18453 0.97898 0.84892 0.97467 1.20777 1.31593 0.94430 1.09137
0.96607 1.25967 0.96907 0.97955 0.97710 1.70044 1.46463 1.10453
1.31699 0.85558 0.79484 0.78394 0.78648 1.18716 1.20195 1.16434
1.67776 1.17012 1.19693 1.24680 1.19650 0.85503 0.87065 0.92226
1.84669 1.26715 1.85400 1.31780 0.94579 0.91256 0.91986 0.91846
0.92249 0.91942 0.91868 0.88781 0.90004 0.78178 0.93480 0.92694
0.91993 0.71788
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.23 8.86 71.98 0.64 -1.59 16
2 C -0.09 -1.23 2.91 -10.79 -0.03 -1.27 16
3 C -0.14 -1.53 9.19 71.98 0.66 -0.87 16
4 C -0.05 -0.99 4.62 29.84 0.14 -0.85 16
5 C -0.20 -5.71 4.59 -19.59 -0.09 -5.80 16
6 C 0.15 4.77 9.70 84.59 0.82 5.59 16
7 N -0.54 -22.84 10.33 -188.05 -1.94 -24.78 16
8 C 0.36 16.79 6.83 138.76 0.95 17.74 16
9 C 0.05 2.67 4.48 29.10 0.13 2.80 16
10 C -0.52 -32.14 9.65 25.60 0.25 -31.89 16
11 H 0.02 1.10 7.98 -2.91 -0.02 1.07 16
12 C 0.01 0.73 5.47 84.66 0.46 1.20 16
13 N -0.95 -60.98 13.96 21.45 0.30 -60.68 16
14 Si 0.96 44.66 27.47 68.60 1.88 46.54 16
15 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16
16 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16
17 H -0.24 -10.31 6.54 99.48 0.65 -9.66 16
18 N -0.57 -25.19 10.36 -300.68 -3.11 -28.30 16
19 C 0.34 11.80 7.81 84.82 0.66 12.46 16
20 O -0.48 -13.04 12.84 -88.19 -1.13 -14.17 16
21 H 0.04 0.68 6.53 -2.39 -0.02 0.67 16
22 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16
23 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16
24 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16
25 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16
26 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16
27 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16
28 H 0.09 1.40 8.07 -2.39 -0.02 1.38 16
29 H 0.08 1.51 7.78 -2.38 -0.02 1.50 16
30 H 0.20 4.38 8.06 -2.91 -0.02 4.36 16
31 H 0.05 2.34 7.58 -2.38 -0.02 2.32 16
32 H 0.05 2.71 7.19 -2.39 -0.02 2.70 16
33 H 0.27 16.06 8.31 -92.71 -0.77 15.29 16
34 H 0.42 6.76 9.06 -74.06 -0.67 6.09 16
Total: -1.00 -77.53 289.24 0.95 -76.58
By element:
Atomic # 1 Polarization: 6.93 SS G_CDS: 0.37 Total: 7.30 kcal
Atomic # 6 Polarization: -7.06 SS G_CDS: 4.59 Total: -2.47 kcal
Atomic # 7 Polarization: -109.01 SS G_CDS: -4.76 Total: -113.77 kcal
Atomic # 8 Polarization: -13.04 SS G_CDS: -1.13 Total: -14.17 kcal
Atomic # 14 Polarization: 44.66 SS G_CDS: 1.88 Total: 46.54 kcal
Total: -77.53 0.95 -76.58 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260725824.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 34.890 kcal
(2) G-P(sol) polarization free energy of solvation -77.529 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.638 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.951 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.578 kcal
(6) G-S(sol) free energy of system = (1) + (5) -41.687 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds