Wall clock time and date at job start Mon Mar 30 2020 03:41:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 H 1.08997 * 109.47563 * 2 1
4 4 C 1.50695 * 109.47448 * 120.00368 * 2 1 3
5 5 H 1.08004 * 120.00546 * 120.27461 * 4 2 1
6 6 C 1.37885 * 119.99721 * 299.99712 * 4 2 1
7 7 N 1.31514 * 120.00035 * 0.02562 * 6 4 2
8 8 Si 1.86803 * 119.99853 * 179.97438 * 6 4 2
9 9 H 1.48494 * 109.47228 * 0.02562 * 8 6 4
10 10 H 1.48501 * 109.46793 * 120.00131 * 8 6 4
11 11 H 1.48500 * 109.47000 * 240.00224 * 8 6 4
12 12 C 1.50707 * 109.47019 * 240.00372 * 2 1 3
13 13 O 1.34653 * 126.97461 * 300.02203 * 12 2 1
14 14 N 1.21599 * 111.66321 * 179.90383 * 13 12 2
15 15 C 1.28785 * 111.25494 * 359.88840 * 14 13 12
16 16 C 1.33675 * 126.98003 * 119.71023 * 12 2 1
17 17 C 1.50125 * 132.09427 * 0.48321 * 16 12 2
18 18 N 1.47517 * 107.87129 * 163.82813 * 17 16 12
19 19 C 1.46894 * 110.99851 * 176.05398 * 18 17 16
20 20 C 1.46831 * 111.80966 * 51.50842 * 18 17 16
21 21 C 1.50696 * 131.32470 * 180.50546 * 15 14 13
22 22 H 1.08998 * 109.46887 * 300.00064 * 1 2 3
23 23 H 1.09005 * 109.47504 * 59.99875 * 1 2 3
24 24 H 1.09002 * 109.47168 * 180.02562 * 1 2 3
25 25 H 0.97000 * 119.99706 * 179.97438 * 7 6 4
26 26 H 1.09002 * 109.77947 * 283.42091 * 17 16 12
27 27 H 1.08997 * 109.78379 * 44.17801 * 17 16 12
28 28 H 1.09005 * 109.47141 * 60.00189 * 19 18 17
29 29 H 1.09006 * 109.46982 * 180.02562 * 19 18 17
30 30 H 1.08998 * 109.47622 * 299.99951 * 19 18 17
31 31 H 1.09010 * 109.35388 * 47.11280 * 20 18 17
32 32 H 1.09000 * 109.35746 * 166.83042 * 20 18 17
33 33 H 1.08997 * 109.84473 * 283.41199 * 21 15 14
34 34 H 1.09005 * 109.84432 * 44.39824 * 21 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0323 -0.7104 1.2304
5 1 2.6570 -1.5860 1.1313
6 6 1.6993 -0.2394 2.4827
7 7 0.9428 0.8296 2.6034
8 14 2.3215 -1.1204 4.0079
9 1 3.1465 -2.2871 3.6037
10 1 3.1467 -0.1874 4.8164
11 1 1.1662 -1.5868 4.8160
12 6 2.0323 -0.7104 -1.2306
13 8 1.7948 -1.9885 -1.5816
14 7 2.3356 -2.2732 -2.6328
15 6 2.9812 -1.2676 -3.1131
16 6 2.7993 -0.1979 -2.1981
17 6 3.4009 1.1640 -2.3902
18 7 4.4570 1.0520 -3.4141
19 6 5.0307 2.3681 -3.7247
20 6 3.9693 0.3902 -4.6307
21 6 3.7913 -1.1158 -4.3747
22 1 -0.3633 0.5138 0.8900
23 1 -0.3634 0.5139 -0.8900
24 1 -0.3633 -1.0277 0.0005
25 1 0.7082 1.1608 3.4845
26 1 2.6340 1.8620 -2.7261
27 1 3.8315 1.5129 -1.4517
28 1 5.4638 2.7981 -2.8215
29 1 5.8063 2.2567 -4.4825
30 1 4.2475 3.0263 -4.1009
31 1 3.0137 0.8269 -4.9212
32 1 4.6914 0.5340 -5.4344
33 1 4.7620 -1.5958 -4.2511
34 1 3.2589 -1.5659 -5.2127
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260729703.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:41:38
Heat of formation + Delta-G solvation = 39.249222 kcal
Electronic energy + Delta-G solvation = -17055.282039 eV
Core-core repulsion = 14376.385712 eV
Total energy + Delta-G solvation = -2678.896327 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-45.66477 -39.34053 -36.80281 -34.91121 -33.90476 -31.99824 -30.87271 -28.27640
-27.31322 -25.62263 -24.20803 -23.73834 -21.31245 -20.45113 -18.72701 -18.11607
-17.63878 -16.81705 -16.18841 -16.03262 -15.86394 -15.00823 -14.85641 -14.49727
-14.27170 -13.70048 -13.54755 -13.18429 -12.94222 -12.87658 -12.84305 -12.59517
-12.37380 -12.26811 -12.23144 -11.84484 -11.70459 -11.21701 -10.76340 -10.55904
-9.98989 -9.27800 -8.18850 -6.33521 0.69904 1.38036 1.40250 1.43700
1.54911 2.35583 2.41269 2.84361 3.10035 3.17053 3.65308 4.05775
4.08316 4.27112 4.31357 4.39028 4.56533 4.68054 4.71789 4.76618
4.80307 4.82204 4.86967 4.96572 5.06202 5.06915 5.08868 5.29745
5.46986 5.69749 5.89788 5.97689 6.14246 6.15705 6.69263 7.34868
7.38533 8.86186
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.030099 B = 0.007337 C = 0.006750
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 930.054465 B = 3815.292925 C = 4147.254256
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C 0.116 3.884
3 H 0.049 0.951
4 C -0.537 4.537
5 H 0.043 0.957
6 C 0.028 3.972
7 N -0.907 5.907
8 Si 0.956 3.044
9 H -0.277 1.277
10 H -0.273 1.273
11 H -0.274 1.274
12 C 0.032 3.968
13 O 0.044 5.956
14 N -0.396 5.396
15 C 0.032 3.968
16 C -0.251 4.251
17 C 0.149 3.851
18 N -0.560 5.560
19 C 0.028 3.972
20 C 0.062 3.938
21 C -0.031 4.031
22 H 0.076 0.924
23 H 0.032 0.968
24 H 0.029 0.971
25 H 0.268 0.732
26 H 0.053 0.947
27 H 0.080 0.920
28 H 0.068 0.932
29 H 0.092 0.908
30 H 0.034 0.966
31 H 0.039 0.961
32 H 0.119 0.881
33 H 0.099 0.901
34 H 0.105 0.895
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.886 3.406 -12.872 14.558
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.185 4.185
2 C 0.097 3.903
3 H 0.066 0.934
4 C -0.575 4.575
5 H 0.062 0.938
6 C -0.173 4.173
7 N -0.545 5.545
8 Si 0.781 3.219
9 H -0.201 1.201
10 H -0.199 1.199
11 H -0.200 1.200
12 C -0.030 4.030
13 O -0.009 6.009
14 N -0.110 5.110
15 C -0.132 4.132
16 C -0.256 4.256
17 C 0.021 3.979
18 N -0.285 5.285
19 C -0.120 4.120
20 C -0.066 4.066
21 C -0.069 4.069
22 H 0.095 0.905
23 H 0.051 0.949
24 H 0.048 0.952
25 H 0.078 0.922
26 H 0.071 0.929
27 H 0.098 0.902
28 H 0.087 0.913
29 H 0.111 0.889
30 H 0.052 0.948
31 H 0.057 0.943
32 H 0.137 0.863
33 H 0.117 0.883
34 H 0.123 0.877
Dipole moment (debyes) X Y Z Total
from point charges 5.939 1.994 -12.894 14.335
hybrid contribution -0.408 0.635 1.011 1.262
sum 5.531 2.629 -11.883 13.368
Atomic orbital electron populations
1.21661 0.96152 0.99763 1.00927 1.17477 0.93908 0.93691 0.85270
0.93351 1.21178 1.32276 1.12932 0.91104 0.93845 1.25568 0.94797
0.95515 1.01373 1.69944 1.36575 1.23370 1.24639 0.85531 0.78389
0.78625 0.79312 1.20133 1.19856 1.19968 1.24567 0.96885 0.83708
0.97860 1.85065 1.57514 1.28165 1.30149 1.73345 1.14141 1.24915
0.98598 1.23924 0.99369 0.89054 1.00822 1.20869 1.07006 1.00569
0.97130 1.20163 0.91931 0.89362 0.96466 1.61793 1.32875 1.23118
1.10689 1.22431 0.99465 0.87557 1.02508 1.22236 1.00333 0.92068
0.91998 1.20408 0.98344 0.98150 0.90004 0.90490 0.94881 0.95183
0.92247 0.92881 0.90173 0.91298 0.88899 0.94778 0.94271 0.86281
0.88275 0.87659
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -6.14 8.95 71.98 0.64 -5.50 16
2 C 0.12 5.86 2.72 -12.29 -0.03 5.83 16
3 H 0.05 2.52 7.90 -2.39 -0.02 2.50 16
4 C -0.54 -29.90 8.55 25.60 0.22 -29.68 16
5 H 0.04 2.51 7.74 -2.91 -0.02 2.49 16
6 C 0.03 1.51 5.30 84.66 0.45 1.96 16
7 N -0.91 -49.80 11.32 21.45 0.24 -49.56 16
8 Si 0.96 43.27 29.54 68.60 2.03 45.30 16
9 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16
10 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16
11 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16
12 C 0.03 1.48 5.92 24.65 0.15 1.63 16
13 O 0.04 2.14 11.24 64.82 0.73 2.87 16
14 N -0.40 -17.26 12.05 -52.61 -0.63 -17.89 16
15 C 0.03 1.19 7.32 43.92 0.32 1.51 16
16 C -0.25 -10.17 6.10 -20.16 -0.12 -10.29 16
17 C 0.15 4.92 5.62 85.26 0.48 5.40 16
18 N -0.56 -14.69 4.84 -924.99 -4.47 -19.17 16
19 C 0.03 0.52 9.58 127.69 1.22 1.74 16
20 C 0.06 1.33 5.50 86.58 0.48 1.81 16
21 C -0.03 -0.79 6.55 30.11 0.20 -0.59 16
22 H 0.08 3.98 6.07 -2.39 -0.01 3.96 16
23 H 0.03 1.40 8.14 -2.38 -0.02 1.38 16
24 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16
25 H 0.27 13.85 8.31 -92.71 -0.77 13.08 16
26 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16
27 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16
28 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16
29 H 0.09 1.30 7.96 -2.38 -0.02 1.28 16
30 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16
31 H 0.04 0.86 8.06 -2.38 -0.02 0.84 16
32 H 0.12 1.70 7.84 -2.39 -0.02 1.68 16
33 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16
34 H 0.11 2.22 8.14 -2.38 -0.02 2.20 16
Total: -1.00 -62.56 281.42 2.97 -59.59
By element:
Atomic # 1 Polarization: 3.97 SS G_CDS: 1.08 Total: 5.05 kcal
Atomic # 6 Polarization: -30.18 SS G_CDS: 4.00 Total: -26.19 kcal
Atomic # 7 Polarization: -81.75 SS G_CDS: -4.87 Total: -86.62 kcal
Atomic # 8 Polarization: 2.14 SS G_CDS: 0.73 Total: 2.87 kcal
Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal
Total: -62.56 2.97 -59.59 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260729703.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 98.838 kcal
(2) G-P(sol) polarization free energy of solvation -62.558 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.280 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.970 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.589 kcal
(6) G-S(sol) free energy of system = (1) + (5) 39.249 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds