Wall clock time and date at job start Mon Mar 30 2020 03:12:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.52998 * 109.46862 * 2 1
4 4 C 1.52996 * 109.47267 * 120.00549 * 2 1 3
5 5 C 1.50705 * 109.47076 * 240.00322 * 2 1 3
6 6 N 1.32307 * 120.40923 * 247.90770 * 5 2 1
7 7 C 1.32309 * 120.75939 * 179.76246 * 6 5 2
8 8 O 1.35456 * 119.19600 * 180.24000 * 7 6 5
9 9 N 1.32336 * 121.60559 * 0.52526 * 7 6 5
10 10 C 1.32284 * 120.76043 * 359.73579 * 9 7 6
11 11 C 1.38566 * 120.41059 * 68.18130 * 5 2 1
12 12 C 1.50706 * 120.74234 * 0.02562 * 11 5 2
13 13 C 1.50696 * 109.47017 * 97.88701 * 12 11 5
14 14 H 1.07997 * 120.00615 * 0.02562 * 13 12 11
15 15 C 1.37886 * 119.99612 * 179.97438 * 13 12 11
16 16 N 1.31510 * 120.00026 * 0.02562 * 15 13 12
17 17 Si 1.86797 * 119.99644 * 179.97438 * 15 13 12
18 18 H 1.48489 * 109.47385 * 0.02562 * 17 15 13
19 19 H 1.48502 * 109.46728 * 120.00510 * 17 15 13
20 20 H 1.48504 * 109.47054 * 239.99894 * 17 15 13
21 21 H 1.09007 * 109.47092 * 174.43171 * 1 2 3
22 22 H 1.08994 * 109.47603 * 54.43151 * 1 2 3
23 23 H 1.09004 * 109.47223 * 294.42435 * 1 2 3
24 24 H 1.08995 * 109.47214 * 73.59117 * 3 2 1
25 25 H 1.09006 * 109.47111 * 193.58947 * 3 2 1
26 26 H 1.08998 * 109.47188 * 313.58809 * 3 2 1
27 27 H 1.08995 * 109.47302 * 59.99748 * 4 2 1
28 28 H 1.09005 * 109.47209 * 180.02562 * 4 2 1
29 29 H 1.09004 * 109.46841 * 299.99910 * 4 2 1
30 30 H 0.96700 * 114.00156 * 270.26932 * 8 7 6
31 31 H 1.08000 * 120.41603 * 179.97438 * 10 9 7
32 32 H 1.09003 * 109.46567 * 217.88763 * 12 11 5
33 33 H 1.08997 * 109.46647 * 337.88876 * 12 11 5
34 34 H 0.97003 * 120.00160 * 179.97438 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 2.0400 -0.7213 1.2491
5 6 2.0323 -0.7104 -1.2305
6 7 2.6602 -1.8702 -1.1249
7 6 3.0999 -2.5021 -2.2010
8 8 3.7343 -3.6902 -2.0565
9 7 2.9400 -1.9990 -3.4145
10 6 2.3256 -0.8409 -3.5912
11 6 1.8474 -0.1542 -2.4861
12 6 1.1429 1.1684 -2.6467
13 6 2.1642 2.2687 -2.7780
14 1 3.2179 2.0339 -2.7486
15 6 1.7532 3.5753 -2.9368
16 7 0.4701 3.8612 -2.9731
17 14 3.0191 4.9394 -3.0988
18 1 4.3840 4.3592 -3.0264
19 1 2.8422 5.6262 -4.4035
20 1 2.8371 5.9171 -1.9960
21 1 -0.3633 -1.0229 -0.0997
22 1 -0.3634 0.5977 -0.8358
23 1 -0.3634 0.4249 0.9357
24 1 1.8873 1.8818 0.9858
25 1 3.1028 1.4521 -0.2415
26 1 1.4930 2.0212 -0.7443
27 1 1.6767 -1.7490 1.2491
28 1 3.1301 -0.7209 1.2493
29 1 1.6767 -0.2075 2.1392
30 1 4.6914 -3.6136 -1.9417
31 1 2.1985 -0.4353 -4.5841
32 1 0.5201 1.1420 -3.5409
33 1 0.5177 1.3553 -1.7737
34 1 0.1809 4.7805 -3.0844
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260756406.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:12:36
Heat of formation + Delta-G solvation = 3.255084 kcal
Electronic energy + Delta-G solvation = -17289.375652 eV
Core-core repulsion = 14608.918501 eV
Total energy + Delta-G solvation = -2680.457150 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-40.85247 -37.75927 -36.07626 -33.89074 -32.47848 -31.26679 -27.64375 -26.85667
-26.22276 -24.06147 -23.83240 -21.39910 -19.75755 -18.05538 -17.24667 -16.51604
-15.80846 -14.86276 -14.43642 -13.89496 -13.75267 -13.57313 -13.15358 -12.99302
-12.30816 -11.84974 -11.80761 -11.57492 -11.52054 -11.20313 -11.02195 -10.90427
-10.75708 -10.62705 -10.48742 -9.98707 -9.76261 -9.68252 -9.41542 -8.65808
-8.39218 -8.23258 -6.20615 -4.23339 1.46595 1.60956 3.20083 3.29492
3.32962 3.53786 4.20408 4.35079 4.63636 5.01412 5.14079 5.34955
5.51013 5.59647 5.63115 5.84815 6.02340 6.09080 6.15308 6.22682
6.36887 6.40026 6.55764 6.61026 6.71056 6.84606 6.89083 7.27069
7.38063 7.42560 7.58154 7.74659 7.85520 8.10201 8.56629 8.78373
9.39086 10.88319
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.025113 B = 0.009027 C = 0.007670
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1114.683608 B = 3101.139245 C = 3649.868143
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.012 4.012
3 C -0.160 4.160
4 C -0.124 4.124
5 C 0.192 3.808
6 N -0.523 5.523
7 C 0.449 3.551
8 O -0.466 6.466
9 N -0.533 5.533
10 C 0.152 3.848
11 C -0.136 4.136
12 C 0.040 3.960
13 C -0.509 4.509
14 H 0.056 0.944
15 C 0.064 3.936
16 N -0.888 5.888
17 Si 0.891 3.109
18 H -0.273 1.273
19 H -0.283 1.283
20 H -0.282 1.282
21 H 0.047 0.953
22 H 0.081 0.919
23 H 0.061 0.939
24 H 0.044 0.956
25 H 0.049 0.951
26 H 0.124 0.876
27 H 0.055 0.945
28 H 0.052 0.948
29 H 0.050 0.950
30 H 0.399 0.601
31 H 0.170 0.830
32 H 0.034 0.966
33 H 0.062 0.938
34 H 0.264 0.736
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.224 -5.865 4.471 7.703
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.013 4.013
3 C -0.217 4.217
4 C -0.182 4.182
5 C 0.046 3.954
6 N -0.247 5.247
7 C 0.145 3.855
8 O -0.267 6.267
9 N -0.257 5.257
10 C -0.012 4.012
11 C -0.140 4.140
12 C 0.003 3.997
13 C -0.547 4.547
14 H 0.075 0.925
15 C -0.139 4.139
16 N -0.526 5.526
17 Si 0.719 3.281
18 H -0.197 1.197
19 H -0.209 1.209
20 H -0.208 1.208
21 H 0.066 0.934
22 H 0.100 0.900
23 H 0.080 0.920
24 H 0.063 0.937
25 H 0.068 0.932
26 H 0.142 0.858
27 H 0.075 0.925
28 H 0.071 0.929
29 H 0.069 0.931
30 H 0.256 0.744
31 H 0.187 0.813
32 H 0.052 0.948
33 H 0.079 0.921
34 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges 2.087 -6.957 4.507 8.548
hybrid contribution 0.933 1.515 -0.259 1.798
sum 3.020 -5.443 4.248 7.536
Atomic orbital electron populations
1.22101 0.93372 1.01698 1.03339 1.19482 0.95714 0.95847 0.90278
1.22534 1.02506 0.93546 1.03067 1.21685 1.00990 0.99946 0.95553
1.21365 0.90831 0.88185 0.94994 1.67600 1.13574 1.09384 1.34175
1.20067 0.94821 0.86419 0.84232 1.84696 1.25148 1.22850 1.94028
1.67807 1.18152 1.13764 1.26026 1.22975 0.90555 0.87582 1.00134
1.22259 0.98322 1.00206 0.93201 1.18799 0.95577 0.85641 0.99718
1.20936 0.92540 0.90671 1.50588 0.92546 1.24929 0.95273 0.98623
0.95063 1.69933 1.13716 1.19649 1.49294 0.86536 0.81719 0.82018
0.77874 1.19725 1.20877 1.20786 0.93409 0.90012 0.92002 0.93736
0.93197 0.85834 0.92543 0.92882 0.93108 0.74392 0.81323 0.94810
0.92092 0.92618
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.40 8.24 37.16 0.31 -2.10 16
2 C -0.01 -0.21 0.75 -155.66 -0.12 -0.33 16
3 C -0.16 -2.99 7.13 37.16 0.26 -2.72 16
4 C -0.12 -1.93 7.70 37.16 0.29 -1.65 16
5 C 0.19 3.77 5.54 -82.26 -0.46 3.31 16
6 N -0.52 -10.18 9.21 -10.95 -0.10 -10.28 16
7 C 0.45 8.58 8.72 -91.24 -0.80 7.78 16
8 O -0.47 -7.48 13.64 -18.06 -0.25 -7.72 16
9 N -0.53 -10.46 10.46 -14.73 -0.15 -10.61 16
10 C 0.15 2.97 11.03 -17.22 -0.19 2.78 16
11 C -0.14 -2.78 4.91 -104.36 -0.51 -3.29 16
12 C 0.04 0.89 4.13 -29.03 -0.12 0.77 16
13 C -0.51 -12.46 6.67 -34.44 -0.23 -12.69 16
14 H 0.06 1.42 7.74 -52.49 -0.41 1.01 16
15 C 0.06 1.61 5.40 -17.82 -0.10 1.51 16
16 N -0.89 -23.45 13.29 55.43 0.74 -22.71 16
17 Si 0.89 19.93 29.54 -169.99 -5.02 14.90 16
18 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16
19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16
20 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16
21 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16
22 H 0.08 1.45 5.28 -51.93 -0.27 1.18 16
23 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16
24 H 0.04 0.73 8.07 -51.93 -0.42 0.32 16
25 H 0.05 0.97 8.05 -51.93 -0.42 0.56 16
26 H 0.12 2.66 3.57 -51.93 -0.19 2.48 16
27 H 0.06 0.88 7.97 -51.93 -0.41 0.47 16
28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16
29 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16
30 H 0.40 4.27 9.06 45.56 0.41 4.68 16
31 H 0.17 2.97 8.06 -52.49 -0.42 2.55 16
32 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16
33 H 0.06 1.37 2.78 -51.93 -0.14 1.23 16
34 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16
LS Contribution 277.27 15.07 4.18 4.18
Total: -1.00 -27.97 277.27 -5.79 -33.76
By element:
Atomic # 1 Polarization: 8.64 SS G_CDS: -3.52 Total: 5.12 kcal
Atomic # 6 Polarization: -4.97 SS G_CDS: -1.66 Total: -6.63 kcal
Atomic # 7 Polarization: -44.09 SS G_CDS: 0.48 Total: -43.61 kcal
Atomic # 8 Polarization: -7.48 SS G_CDS: -0.25 Total: -7.72 kcal
Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.90 kcal
Total LS contribution 4.18 Total: 4.18 kcal
Total: -27.97 -5.79 -33.76 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260756406.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 37.011 kcal
(2) G-P(sol) polarization free energy of solvation -27.971 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.040 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.785 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.756 kcal
(6) G-S(sol) free energy of system = (1) + (5) 3.255 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds