Wall clock time and date at job start Mon Mar 30 2020 03:12:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.52998 * 109.46862 * 2 1
4 4 C 1.52996 * 109.47267 * 120.00549 * 2 1 3
5 5 C 1.50705 * 109.47076 * 240.00322 * 2 1 3
6 6 N 1.32307 * 120.40923 * 247.90770 * 5 2 1
7 7 C 1.32309 * 120.75939 * 179.76246 * 6 5 2
8 8 O 1.35456 * 119.19600 * 180.24000 * 7 6 5
9 9 N 1.32336 * 121.60559 * 0.52526 * 7 6 5
10 10 C 1.32284 * 120.76043 * 359.73579 * 9 7 6
11 11 C 1.38566 * 120.41059 * 68.18130 * 5 2 1
12 12 C 1.50706 * 120.74234 * 0.02562 * 11 5 2
13 13 C 1.50696 * 109.47017 * 97.88701 * 12 11 5
14 14 H 1.07997 * 120.00615 * 0.02562 * 13 12 11
15 15 C 1.37886 * 119.99612 * 179.97438 * 13 12 11
16 16 N 1.31510 * 120.00026 * 0.02562 * 15 13 12
17 17 Si 1.86797 * 119.99644 * 179.97438 * 15 13 12
18 18 H 1.48489 * 109.47385 * 0.02562 * 17 15 13
19 19 H 1.48502 * 109.46728 * 120.00510 * 17 15 13
20 20 H 1.48504 * 109.47054 * 239.99894 * 17 15 13
21 21 H 1.09007 * 109.47092 * 174.43171 * 1 2 3
22 22 H 1.08994 * 109.47603 * 54.43151 * 1 2 3
23 23 H 1.09004 * 109.47223 * 294.42435 * 1 2 3
24 24 H 1.08995 * 109.47214 * 73.59117 * 3 2 1
25 25 H 1.09006 * 109.47111 * 193.58947 * 3 2 1
26 26 H 1.08998 * 109.47188 * 313.58809 * 3 2 1
27 27 H 1.08995 * 109.47302 * 59.99748 * 4 2 1
28 28 H 1.09005 * 109.47209 * 180.02562 * 4 2 1
29 29 H 1.09004 * 109.46841 * 299.99910 * 4 2 1
30 30 H 0.96700 * 114.00156 * 270.26932 * 8 7 6
31 31 H 1.08000 * 120.41603 * 179.97438 * 10 9 7
32 32 H 1.09003 * 109.46567 * 217.88763 * 12 11 5
33 33 H 1.08997 * 109.46647 * 337.88876 * 12 11 5
34 34 H 0.97003 * 120.00160 * 179.97438 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 2.0400 -0.7213 1.2491
5 6 2.0323 -0.7104 -1.2305
6 7 2.6602 -1.8702 -1.1249
7 6 3.0999 -2.5021 -2.2010
8 8 3.7343 -3.6902 -2.0565
9 7 2.9400 -1.9990 -3.4145
10 6 2.3256 -0.8409 -3.5912
11 6 1.8474 -0.1542 -2.4861
12 6 1.1429 1.1684 -2.6467
13 6 2.1642 2.2687 -2.7780
14 1 3.2179 2.0339 -2.7486
15 6 1.7532 3.5753 -2.9368
16 7 0.4701 3.8612 -2.9731
17 14 3.0191 4.9394 -3.0988
18 1 4.3840 4.3592 -3.0264
19 1 2.8422 5.6262 -4.4035
20 1 2.8371 5.9171 -1.9960
21 1 -0.3633 -1.0229 -0.0997
22 1 -0.3634 0.5977 -0.8358
23 1 -0.3634 0.4249 0.9357
24 1 1.8873 1.8818 0.9858
25 1 3.1028 1.4521 -0.2415
26 1 1.4930 2.0212 -0.7443
27 1 1.6767 -1.7490 1.2491
28 1 3.1301 -0.7209 1.2493
29 1 1.6767 -0.2075 2.1392
30 1 4.6914 -3.6136 -1.9417
31 1 2.1985 -0.4353 -4.5841
32 1 0.5201 1.1420 -3.5409
33 1 0.5177 1.3553 -1.7737
34 1 0.1809 4.7805 -3.0844
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260756406.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:12:36
Heat of formation + Delta-G solvation = -17.079548 kcal
Electronic energy + Delta-G solvation = -17290.257427 eV
Core-core repulsion = 14608.918501 eV
Total energy + Delta-G solvation = -2681.338926 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-42.35614 -39.15765 -37.46645 -35.64016 -34.07172 -32.92944 -29.29725 -28.18984
-27.69116 -25.61970 -25.49658 -23.05850 -21.15421 -19.44513 -18.76350 -18.42741
-17.23104 -16.67509 -15.89140 -15.37169 -15.20954 -15.07827 -14.70937 -14.58704
-13.98401 -13.34634 -13.10394 -13.01261 -13.00879 -12.79868 -12.62041 -12.48228
-12.29154 -12.15113 -11.95490 -11.59492 -11.41947 -11.36734 -11.02506 -10.53172
-9.97327 -9.84099 -8.14058 -6.20568 -0.05084 0.07765 1.41886 1.46932
1.55160 2.14857 2.44011 2.73922 3.15385 3.20426 3.56548 3.92886
4.14130 4.16226 4.19489 4.43699 4.52932 4.74166 4.84393 4.91989
4.98403 5.10594 5.14555 5.22570 5.29514 5.37757 5.49567 5.52874
5.69803 5.78356 5.91710 5.99755 6.21973 6.59156 6.85467 7.04326
7.43706 8.94945
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.025113 B = 0.009027 C = 0.007670
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1114.683608 B = 3101.139245 C = 3649.868143
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.015 4.015
3 C -0.151 4.151
4 C -0.116 4.116
5 C 0.192 3.808
6 N -0.528 5.528
7 C 0.453 3.547
8 O -0.465 6.465
9 N -0.542 5.542
10 C 0.152 3.848
11 C -0.157 4.157
12 C 0.051 3.949
13 C -0.505 4.505
14 H 0.046 0.954
15 C 0.023 3.977
16 N -0.917 5.917
17 Si 0.943 3.057
18 H -0.273 1.273
19 H -0.283 1.283
20 H -0.278 1.278
21 H 0.052 0.948
22 H 0.061 0.939
23 H 0.085 0.915
24 H 0.066 0.934
25 H 0.034 0.966
26 H 0.094 0.906
27 H 0.055 0.945
28 H 0.047 0.953
29 H 0.074 0.926
30 H 0.424 0.576
31 H 0.181 0.819
32 H 0.012 0.988
33 H 0.063 0.937
34 H 0.265 0.735
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.867 -6.397 5.529 8.929
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.016 4.016
3 C -0.209 4.209
4 C -0.173 4.173
5 C 0.046 3.954
6 N -0.253 5.253
7 C 0.148 3.852
8 O -0.270 6.270
9 N -0.268 5.268
10 C -0.012 4.012
11 C -0.161 4.161
12 C 0.014 3.986
13 C -0.544 4.544
14 H 0.064 0.936
15 C -0.176 4.176
16 N -0.557 5.557
17 Si 0.770 3.230
18 H -0.197 1.197
19 H -0.209 1.209
20 H -0.204 1.204
21 H 0.071 0.929
22 H 0.079 0.921
23 H 0.104 0.896
24 H 0.085 0.915
25 H 0.053 0.947
26 H 0.113 0.887
27 H 0.074 0.926
28 H 0.066 0.934
29 H 0.093 0.907
30 H 0.285 0.715
31 H 0.198 0.802
32 H 0.030 0.970
33 H 0.080 0.920
34 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges 2.762 -7.503 5.567 9.742
hybrid contribution 0.778 1.578 -0.581 1.853
sum 3.539 -5.925 4.986 8.514
Atomic orbital electron populations
1.22041 0.92385 1.01826 1.03725 1.19589 0.96469 0.95024 0.90490
1.22368 1.00969 0.94182 1.03346 1.21620 1.00584 0.99884 0.95253
1.21701 0.90048 0.88234 0.95402 1.67719 1.13990 1.09414 1.34159
1.20355 0.94128 0.86630 0.84091 1.84651 1.27194 1.21269 1.93888
1.67895 1.18685 1.13804 1.26373 1.23185 0.89897 0.87589 1.00556
1.22112 0.99839 0.99903 0.94242 1.18583 0.95022 0.86330 0.98700
1.21049 0.92351 0.91425 1.49542 0.93588 1.25510 0.96559 1.00432
0.95146 1.70014 1.15032 1.20003 1.50605 0.85723 0.79780 0.79817
0.77725 1.19720 1.20875 1.20387 0.92857 0.92060 0.89623 0.91510
0.94697 0.88715 0.92574 0.93433 0.90691 0.71512 0.80167 0.96972
0.91961 0.92604
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -4.42 8.24 71.98 0.59 -3.82 16
2 C -0.01 -0.49 0.75 -52.93 -0.04 -0.53 16
3 C -0.15 -5.52 7.13 71.98 0.51 -5.01 16
4 C -0.12 -3.30 7.70 71.98 0.55 -2.75 16
5 C 0.19 7.35 5.54 42.57 0.24 7.59 16
6 N -0.53 -19.74 9.21 -301.51 -2.78 -22.52 16
7 C 0.45 16.53 8.72 180.57 1.57 18.11 16
8 O -0.46 -13.83 13.64 -87.53 -1.19 -15.02 16
9 N -0.54 -20.68 10.46 -313.45 -3.28 -23.96 16
10 C 0.15 5.88 11.03 84.72 0.93 6.82 16
11 C -0.16 -6.42 4.91 -19.69 -0.10 -6.51 16
12 C 0.05 2.32 4.13 29.10 0.12 2.44 16
13 C -0.51 -24.98 6.67 25.60 0.17 -24.81 16
14 H 0.05 2.33 7.74 -2.91 -0.02 2.31 16
15 C 0.02 1.17 5.40 84.66 0.46 1.63 16
16 N -0.92 -48.90 13.29 21.45 0.28 -48.61 16
17 Si 0.94 40.82 29.54 68.60 2.03 42.85 16
18 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16
19 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16
20 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16
21 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16
22 H 0.06 2.16 5.28 -2.39 -0.01 2.15 16
23 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16
24 H 0.07 2.08 8.07 -2.39 -0.02 2.06 16
25 H 0.03 1.33 8.05 -2.38 -0.02 1.31 16
26 H 0.09 4.08 3.57 -2.39 -0.01 4.07 16
27 H 0.06 1.60 7.97 -2.39 -0.02 1.58 16
28 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16
29 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16
30 H 0.42 7.91 9.06 -74.06 -0.67 7.24 16
31 H 0.18 6.35 8.06 -2.91 -0.02 6.33 16
32 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16
33 H 0.06 2.85 2.78 -2.39 -0.01 2.84 16
34 H 0.26 13.47 8.31 -92.71 -0.77 12.70 16
Total: -1.00 -58.14 277.27 0.53 -57.61
By element:
Atomic # 1 Polarization: 16.05 SS G_CDS: 0.45 Total: 16.50 kcal
Atomic # 6 Polarization: -11.87 SS G_CDS: 5.02 Total: -6.85 kcal
Atomic # 7 Polarization: -89.32 SS G_CDS: -5.77 Total: -95.09 kcal
Atomic # 8 Polarization: -13.83 SS G_CDS: -1.19 Total: -15.02 kcal
Atomic # 14 Polarization: 40.82 SS G_CDS: 2.03 Total: 42.85 kcal
Total: -58.14 0.53 -57.61 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260756406.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 40.532 kcal
(2) G-P(sol) polarization free energy of solvation -58.141 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.609 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.530 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.611 kcal
(6) G-S(sol) free energy of system = (1) + (5) -17.080 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds