Wall clock time and date at job start Mon Mar 30 2020 03:37:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.08996 * 109.46705 * 2 1
4 4 C 1.53107 * 109.46256 * 119.98561 * 2 1 3
5 5 C 1.53363 * 109.50629 * 49.72286 * 4 2 1
6 6 C 1.50817 * 108.38402 * 49.94120 * 5 4 2
7 7 C 1.35752 * 124.12044 * 343.46584 * 6 5 4
8 8 C 1.39303 * 107.99030 * 179.82978 * 7 6 5
9 9 N 1.31070 * 108.07736 * 0.05767 * 8 7 6
10 10 N 1.34323 * 128.03802 * 163.36342 * 6 5 4
11 11 C 1.46505 * 126.08914 * 359.91065 * 10 6 5
12 12 C 1.50838 * 124.11026 * 359.78827 * 7 6 5
13 13 O 1.42898 * 109.68725 * 103.18679 * 12 7 6
14 14 C 1.50704 * 109.71218 * 223.72512 * 12 7 6
15 15 H 1.07998 * 120.00113 * 4.14099 * 14 12 7
16 16 C 1.37879 * 119.99765 * 184.14007 * 14 12 7
17 17 N 1.31514 * 119.99899 * 6.14123 * 16 14 12
18 18 Si 1.86801 * 119.99630 * 186.13423 * 16 14 12
19 19 H 1.48500 * 109.46835 * 90.00548 * 18 16 14
20 20 H 1.48505 * 109.47058 * 210.00218 * 18 16 14
21 21 H 1.48500 * 109.47364 * 330.00199 * 18 16 14
22 22 H 1.09004 * 109.47077 * 300.01963 * 1 2 3
23 23 H 1.09003 * 109.46850 * 60.01458 * 1 2 3
24 24 H 1.08999 * 109.47331 * 180.02562 * 1 2 3
25 25 H 1.09001 * 109.46533 * 289.71339 * 4 2 1
26 26 H 1.09003 * 109.46836 * 169.73578 * 4 2 1
27 27 H 1.09003 * 109.68272 * 290.21625 * 5 4 2
28 28 H 1.09003 * 109.70926 * 169.68381 * 5 4 2
29 29 H 1.07999 * 125.95724 * 180.02562 * 8 7 6
30 30 H 1.09000 * 109.47414 * 89.99615 * 11 10 6
31 31 H 1.09002 * 109.46935 * 209.99913 * 11 10 6
32 32 H 1.09007 * 109.46715 * 329.99594 * 11 10 6
33 33 H 0.96695 * 114.00268 * 61.07148 * 13 12 7
34 34 H 0.97005 * 119.99261 * 179.97438 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8932 1.0277 0.0000
4 6 2.0401 -0.7215 1.2504
5 6 1.3296 -2.0737 1.3871
6 6 1.4204 -2.7945 0.0654
7 6 1.7391 -2.1936 -1.1094
8 6 1.7296 -3.1661 -2.1066
9 7 1.4153 -4.3123 -1.5539
10 7 1.2153 -4.0988 -0.1818
11 6 0.8534 -5.1179 0.8064
12 6 2.0410 -0.7226 -1.2525
13 8 3.4515 -0.5306 -1.3773
14 6 1.3446 -0.1772 -2.4727
15 1 0.6882 -0.8123 -3.0489
16 6 1.5456 1.1327 -2.8533
17 7 2.4351 1.8707 -2.2257
18 14 0.5546 1.8590 -4.2603
19 1 -0.6913 2.4657 -3.7267
20 1 1.3591 2.9022 -4.9457
21 1 0.2082 0.7864 -5.2272
22 1 -0.3633 0.5142 0.8898
23 1 -0.3633 0.5136 -0.8902
24 1 -0.3634 -1.0276 0.0005
25 1 1.8343 -0.1124 2.1306
26 1 3.1147 -0.8829 1.1637
27 1 0.2831 -1.9139 1.6470
28 1 1.8140 -2.6667 2.1628
29 1 1.9433 -3.0039 -3.1527
30 1 -0.2321 -5.1819 0.8816
31 1 1.2536 -6.0832 0.4961
32 1 1.2695 -4.8470 1.7768
33 1 3.8404 -0.9623 -2.1502
34 1 2.5767 2.7921 -2.4938
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260787432.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:37:32
Heat of formation + Delta-G solvation = 26.184630 kcal
Electronic energy + Delta-G solvation = -17835.073902 eV
Core-core repulsion = 15155.611052 eV
Total energy + Delta-G solvation = -2679.462850 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-40.84332 -37.08627 -34.21478 -32.60494 -32.11678 -29.71273 -28.48769 -26.55267
-25.17000 -24.60062 -21.77498 -20.22298 -19.92450 -17.11191 -16.59848 -16.21853
-15.19154 -14.53651 -14.40477 -13.96613 -13.59647 -13.43177 -13.02504 -12.50035
-12.34162 -12.15028 -11.78301 -11.36807 -11.26933 -11.06297 -10.83601 -10.77712
-10.34672 -10.07848 -10.04427 -9.81014 -9.48228 -8.66946 -8.56293 -8.47755
-8.03000 -7.42069 -5.90107 -4.05093 2.53690 3.09980 3.31454 3.39570
3.42270 3.68145 4.45837 4.94941 5.19674 5.32245 5.33775 5.50997
5.55876 5.70032 5.79468 5.91924 6.07702 6.34778 6.38238 6.47622
6.54870 6.65280 6.69214 6.87255 6.98450 7.13980 7.41568 7.53650
7.64242 7.80700 7.85902 7.98006 8.32688 8.46988 8.92759 9.49700
9.70665 11.10251
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.031243 B = 0.009963 C = 0.008902
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 895.983104 B = 2809.820656 C = 3144.685742
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.125 4.125
2 C -0.063 4.063
3 H 0.091 0.909
4 C -0.111 4.111
5 C -0.048 4.048
6 C 0.068 3.932
7 C -0.214 4.214
8 C 0.063 3.937
9 N -0.325 5.325
10 N -0.384 5.384
11 C 0.108 3.892
12 C 0.327 3.673
13 O -0.553 6.553
14 C -0.546 4.546
15 H 0.056 0.944
16 C 0.082 3.918
17 N -0.853 5.853
18 Si 0.878 3.122
19 H -0.281 1.281
20 H -0.288 1.288
21 H -0.274 1.274
22 H 0.027 0.973
23 H 0.066 0.934
24 H 0.038 0.962
25 H 0.053 0.947
26 H 0.066 0.934
27 H 0.075 0.925
28 H 0.061 0.939
29 H 0.178 0.822
30 H 0.065 0.935
31 H 0.080 0.920
32 H 0.078 0.922
33 H 0.349 0.651
34 H 0.257 0.743
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.266 -7.306 6.749 10.201
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.183 4.183
2 C -0.082 4.082
3 H 0.109 0.891
4 C -0.149 4.149
5 C -0.087 4.087
6 C -0.058 4.058
7 C -0.225 4.225
8 C -0.121 4.121
9 N -0.147 5.147
10 N -0.168 5.168
11 C -0.035 4.035
12 C 0.287 3.713
13 O -0.355 6.355
14 C -0.584 4.584
15 H 0.074 0.926
16 C -0.124 4.124
17 N -0.488 5.488
18 Si 0.706 3.294
19 H -0.207 1.207
20 H -0.214 1.214
21 H -0.199 1.199
22 H 0.046 0.954
23 H 0.085 0.915
24 H 0.057 0.943
25 H 0.072 0.928
26 H 0.085 0.915
27 H 0.093 0.907
28 H 0.079 0.921
29 H 0.195 0.805
30 H 0.083 0.917
31 H 0.099 0.901
32 H 0.097 0.903
33 H 0.192 0.808
34 H 0.067 0.933
Dipole moment (debyes) X Y Z Total
from point charges -2.513 -8.129 7.227 11.164
hybrid contribution -0.509 0.824 -1.217 1.555
sum -3.022 -7.305 6.011 9.931
Atomic orbital electron populations
1.21692 0.96287 1.00021 1.00265 1.20911 0.94234 1.01192 0.91897
0.89089 1.21675 1.00348 0.93645 0.99199 1.20294 1.01271 0.96342
0.90800 1.20948 1.02708 0.84201 0.97962 1.21342 1.10484 1.00266
0.90440 1.23571 0.98488 0.89828 1.00218 1.77356 1.26217 1.23640
0.87489 1.48090 1.55857 1.06158 1.06647 1.21623 1.00737 0.91185
0.89920 1.17035 0.79555 0.81809 0.92927 1.86458 1.23055 1.77643
1.48328 1.21465 1.28973 0.96502 1.11460 0.92620 1.24964 0.94336
0.97109 0.95967 1.70111 1.30858 1.07759 1.40100 0.86842 0.80449
0.79121 0.83023 1.20699 1.21350 1.19937 0.95427 0.91454 0.94338
0.92795 0.91531 0.90652 0.92076 0.80537 0.91690 0.90096 0.90341
0.80767 0.93306
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.63 8.03 37.16 0.30 -2.33 16
2 C -0.06 -1.43 2.27 -90.38 -0.21 -1.63 16
3 H 0.09 2.33 7.03 -51.93 -0.37 1.97 16
4 C -0.11 -2.08 5.54 -26.49 -0.15 -2.23 16
5 C -0.05 -0.80 5.26 -27.64 -0.15 -0.94 16
6 C 0.07 1.33 5.96 -82.34 -0.49 0.84 16
7 C -0.21 -4.71 4.57 -105.05 -0.48 -5.19 16
8 C 0.06 1.33 11.35 -17.48 -0.20 1.13 16
9 N -0.32 -6.61 12.59 30.55 0.38 -6.23 16
10 N -0.38 -6.98 4.00 -63.87 -0.26 -7.24 16
11 C 0.11 1.34 11.32 59.85 0.68 2.02 16
12 C 0.33 7.84 0.46 -92.67 -0.04 7.80 16
13 O -0.55 -13.92 11.59 -35.23 -0.41 -14.33 16
14 C -0.55 -14.16 6.28 -34.44 -0.22 -14.38 16
15 H 0.06 1.48 7.47 -52.49 -0.39 1.08 16
16 C 0.08 2.16 5.16 -17.82 -0.09 2.07 16
17 N -0.85 -23.53 11.34 55.43 0.63 -22.91 16
18 Si 0.88 20.64 29.54 -169.99 -5.02 15.61 16
19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16
20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16
21 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16
22 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16
23 H 0.07 1.56 6.90 -51.93 -0.36 1.20 16
24 H 0.04 0.78 5.61 -51.93 -0.29 0.49 16
25 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16
26 H 0.07 1.34 7.78 -51.93 -0.40 0.94 16
27 H 0.08 1.16 6.98 -51.93 -0.36 0.80 16
28 H 0.06 0.85 7.75 -51.93 -0.40 0.45 16
29 H 0.18 3.47 8.06 -52.49 -0.42 3.04 16
30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16
31 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16
32 H 0.08 0.79 7.57 -51.93 -0.39 0.40 16
33 H 0.35 8.10 9.04 45.56 0.41 8.51 16
34 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16
LS Contribution 271.65 15.07 4.09 4.09
Total: -1.00 -30.31 271.65 -5.43 -35.74
By element:
Atomic # 1 Polarization: 11.90 SS G_CDS: -3.81 Total: 8.10 kcal
Atomic # 6 Polarization: -11.80 SS G_CDS: -1.04 Total: -12.84 kcal
Atomic # 7 Polarization: -37.13 SS G_CDS: 0.76 Total: -36.38 kcal
Atomic # 8 Polarization: -13.92 SS G_CDS: -0.41 Total: -14.33 kcal
Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal
Total LS contribution 4.09 Total: 4.09 kcal
Total: -30.31 -5.43 -35.74 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260787432.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 61.922 kcal
(2) G-P(sol) polarization free energy of solvation -30.312 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.611 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.426 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.738 kcal
(6) G-S(sol) free energy of system = (1) + (5) 26.185 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds