Wall clock time and date at job start Mon Mar 30 2020 03:37:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.08996 * 109.46705 * 2 1
4 4 C 1.53107 * 109.46256 * 119.98561 * 2 1 3
5 5 C 1.53363 * 109.50629 * 49.72286 * 4 2 1
6 6 C 1.50817 * 108.38402 * 49.94120 * 5 4 2
7 7 C 1.35752 * 124.12044 * 343.46584 * 6 5 4
8 8 C 1.39303 * 107.99030 * 179.82978 * 7 6 5
9 9 N 1.31070 * 108.07736 * 0.05767 * 8 7 6
10 10 N 1.34323 * 128.03802 * 163.36342 * 6 5 4
11 11 C 1.46505 * 126.08914 * 359.91065 * 10 6 5
12 12 C 1.50838 * 124.11026 * 359.78827 * 7 6 5
13 13 O 1.42898 * 109.68725 * 103.18679 * 12 7 6
14 14 C 1.50704 * 109.71218 * 223.72512 * 12 7 6
15 15 H 1.07998 * 120.00113 * 4.14099 * 14 12 7
16 16 C 1.37879 * 119.99765 * 184.14007 * 14 12 7
17 17 N 1.31514 * 119.99899 * 6.14123 * 16 14 12
18 18 Si 1.86801 * 119.99630 * 186.13423 * 16 14 12
19 19 H 1.48500 * 109.46835 * 90.00548 * 18 16 14
20 20 H 1.48505 * 109.47058 * 210.00218 * 18 16 14
21 21 H 1.48500 * 109.47364 * 330.00199 * 18 16 14
22 22 H 1.09004 * 109.47077 * 300.01963 * 1 2 3
23 23 H 1.09003 * 109.46850 * 60.01458 * 1 2 3
24 24 H 1.08999 * 109.47331 * 180.02562 * 1 2 3
25 25 H 1.09001 * 109.46533 * 289.71339 * 4 2 1
26 26 H 1.09003 * 109.46836 * 169.73578 * 4 2 1
27 27 H 1.09003 * 109.68272 * 290.21625 * 5 4 2
28 28 H 1.09003 * 109.70926 * 169.68381 * 5 4 2
29 29 H 1.07999 * 125.95724 * 180.02562 * 8 7 6
30 30 H 1.09000 * 109.47414 * 89.99615 * 11 10 6
31 31 H 1.09002 * 109.46935 * 209.99913 * 11 10 6
32 32 H 1.09007 * 109.46715 * 329.99594 * 11 10 6
33 33 H 0.96695 * 114.00268 * 61.07148 * 13 12 7
34 34 H 0.97005 * 119.99261 * 179.97438 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8932 1.0277 0.0000
4 6 2.0401 -0.7215 1.2504
5 6 1.3296 -2.0737 1.3871
6 6 1.4204 -2.7945 0.0654
7 6 1.7391 -2.1936 -1.1094
8 6 1.7296 -3.1661 -2.1066
9 7 1.4153 -4.3123 -1.5539
10 7 1.2153 -4.0988 -0.1818
11 6 0.8534 -5.1179 0.8064
12 6 2.0410 -0.7226 -1.2525
13 8 3.4515 -0.5306 -1.3773
14 6 1.3446 -0.1772 -2.4727
15 1 0.6882 -0.8123 -3.0489
16 6 1.5456 1.1327 -2.8533
17 7 2.4351 1.8707 -2.2257
18 14 0.5546 1.8590 -4.2603
19 1 -0.6913 2.4657 -3.7267
20 1 1.3591 2.9022 -4.9457
21 1 0.2082 0.7864 -5.2272
22 1 -0.3633 0.5142 0.8898
23 1 -0.3633 0.5136 -0.8902
24 1 -0.3634 -1.0276 0.0005
25 1 1.8343 -0.1124 2.1306
26 1 3.1147 -0.8829 1.1637
27 1 0.2831 -1.9139 1.6470
28 1 1.8140 -2.6667 2.1628
29 1 1.9433 -3.0039 -3.1527
30 1 -0.2321 -5.1819 0.8816
31 1 1.2536 -6.0832 0.4961
32 1 1.2695 -4.8470 1.7768
33 1 3.8404 -0.9623 -2.1502
34 1 2.5767 2.7921 -2.4938
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260787432.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:37:32
Heat of formation + Delta-G solvation = 4.868750 kcal
Electronic energy + Delta-G solvation = -17835.998228 eV
Core-core repulsion = 15155.611052 eV
Total energy + Delta-G solvation = -2680.387176 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-42.35803 -38.77387 -35.90017 -34.13914 -34.01475 -31.27487 -30.13780 -27.96798
-26.87026 -26.23753 -23.42820 -21.81819 -21.44276 -18.73928 -18.52540 -17.74427
-16.54316 -16.50769 -16.13052 -15.46512 -15.08050 -15.02823 -14.70036 -13.89363
-13.74067 -13.46744 -13.22898 -13.08767 -12.94927 -12.83381 -12.57470 -12.48789
-12.17797 -11.99465 -11.57722 -11.42557 -11.19226 -10.55030 -10.38280 -9.99408
-9.95209 -8.99046 -7.92520 -6.12058 1.05181 1.41435 1.45082 1.52247
1.81341 2.05057 2.49331 3.29333 3.79182 3.82568 4.12757 4.23242
4.29918 4.45912 4.48800 4.65618 4.74530 4.78666 4.81802 4.94435
5.00771 5.08810 5.13022 5.23298 5.39460 5.46903 5.75439 5.78781
5.90410 6.01136 6.11449 6.34997 6.42394 6.87362 6.94865 7.50481
7.75884 9.06311
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.031243 B = 0.009963 C = 0.008902
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 895.983104 B = 2809.820656 C = 3144.685742
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.114 4.114
2 C -0.067 4.067
3 H 0.051 0.949
4 C -0.105 4.105
5 C -0.042 4.042
6 C 0.077 3.923
7 C -0.251 4.251
8 C 0.046 3.954
9 N -0.339 5.339
10 N -0.376 5.376
11 C 0.093 3.907
12 C 0.321 3.679
13 O -0.569 6.569
14 C -0.547 4.547
15 H 0.042 0.958
16 C 0.042 3.958
17 N -0.880 5.880
18 Si 0.930 3.070
19 H -0.278 1.278
20 H -0.287 1.287
21 H -0.274 1.274
22 H 0.055 0.945
23 H 0.035 0.965
24 H 0.045 0.955
25 H 0.081 0.919
26 H 0.047 0.953
27 H 0.098 0.902
28 H 0.100 0.900
29 H 0.175 0.825
30 H 0.085 0.915
31 H 0.092 0.908
32 H 0.110 0.890
33 H 0.350 0.650
34 H 0.254 0.746
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.398 -8.688 8.776 12.808
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.172 4.172
2 C -0.086 4.086
3 H 0.070 0.930
4 C -0.143 4.143
5 C -0.081 4.081
6 C -0.052 4.052
7 C -0.263 4.263
8 C -0.137 4.137
9 N -0.162 5.162
10 N -0.159 5.159
11 C -0.047 4.047
12 C 0.280 3.720
13 O -0.372 6.372
14 C -0.585 4.585
15 H 0.060 0.940
16 C -0.161 4.161
17 N -0.518 5.518
18 Si 0.757 3.243
19 H -0.204 1.204
20 H -0.213 1.213
21 H -0.199 1.199
22 H 0.074 0.926
23 H 0.054 0.946
24 H 0.064 0.936
25 H 0.100 0.900
26 H 0.066 0.934
27 H 0.116 0.884
28 H 0.119 0.881
29 H 0.192 0.808
30 H 0.103 0.897
31 H 0.111 0.889
32 H 0.128 0.872
33 H 0.194 0.806
34 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges -3.659 -9.544 9.252 13.787
hybrid contribution -0.164 1.170 -1.804 2.157
sum -3.823 -8.374 7.448 11.841
Atomic orbital electron populations
1.21563 0.95143 1.00327 1.00138 1.20850 0.95155 0.99233 0.93341
0.93034 1.21570 0.99300 0.95228 0.98189 1.20398 1.02692 0.94865
0.90101 1.21316 1.00778 0.84751 0.98380 1.21180 1.13527 0.99395
0.92170 1.23601 0.99407 0.90245 1.00453 1.77285 1.26621 1.23199
0.89078 1.48503 1.54018 1.06814 1.06528 1.22149 1.02414 0.90348
0.89776 1.17089 0.78413 0.83627 0.92821 1.86434 1.24227 1.78098
1.48449 1.21664 1.28337 0.96350 1.12170 0.93993 1.25512 0.95125
0.97531 0.97896 1.70230 1.32272 1.07764 1.41487 0.86022 0.79276
0.78294 0.80740 1.20387 1.21309 1.19878 0.92566 0.94562 0.93605
0.90004 0.93433 0.88416 0.88128 0.80787 0.89693 0.88908 0.87178
0.80634 0.93631
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -4.66 8.03 71.98 0.58 -4.08 16
2 C -0.07 -2.98 2.27 -10.64 -0.02 -3.01 16
3 H 0.05 2.69 7.03 -2.39 -0.02 2.68 16
4 C -0.10 -3.70 5.54 30.75 0.17 -3.53 16
5 C -0.04 -1.21 5.26 30.01 0.16 -1.05 16
6 C 0.08 2.79 5.96 41.64 0.25 3.04 16
7 C -0.25 -10.97 4.57 -20.14 -0.09 -11.07 16
8 C 0.05 1.96 11.35 85.06 0.97 2.92 16
9 N -0.34 -13.39 12.59 -57.27 -0.72 -14.11 16
10 N -0.38 -12.53 4.00 -356.00 -1.42 -13.95 16
11 C 0.09 1.88 11.32 127.77 1.45 3.33 16
12 C 0.32 15.61 0.46 -12.12 -0.01 15.60 16
13 O -0.57 -29.62 11.59 -148.98 -1.73 -31.35 16
14 C -0.55 -29.13 6.28 25.60 0.16 -28.97 16
15 H 0.04 2.29 7.47 -2.91 -0.02 2.27 16
16 C 0.04 2.28 5.16 84.66 0.44 2.71 16
17 N -0.88 -50.03 11.34 21.45 0.24 -49.79 16
18 Si 0.93 43.27 29.54 68.60 2.03 45.30 16
19 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16
20 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16
21 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16
22 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16
23 H 0.04 1.66 6.90 -2.39 -0.02 1.65 16
24 H 0.04 1.76 5.61 -2.39 -0.01 1.75 16
25 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16
26 H 0.05 1.85 7.78 -2.39 -0.02 1.83 16
27 H 0.10 2.46 6.98 -2.39 -0.02 2.45 16
28 H 0.10 2.18 7.75 -2.39 -0.02 2.16 16
29 H 0.18 7.13 8.06 -2.91 -0.02 7.11 16
30 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16
31 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16
32 H 0.11 1.58 7.57 -2.38 -0.02 1.56 16
33 H 0.35 17.08 9.04 -74.06 -0.67 16.41 16
34 H 0.25 13.96 8.31 -92.70 -0.77 13.19 16
Total: -1.00 -66.86 271.65 2.88 -63.98
By element:
Atomic # 1 Polarization: 23.58 SS G_CDS: 0.44 Total: 24.02 kcal
Atomic # 6 Polarization: -28.14 SS G_CDS: 4.04 Total: -24.10 kcal
Atomic # 7 Polarization: -75.95 SS G_CDS: -1.90 Total: -77.85 kcal
Atomic # 8 Polarization: -29.62 SS G_CDS: -1.73 Total: -31.35 kcal
Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal
Total: -66.86 2.88 -63.98 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260787432.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 68.853 kcal
(2) G-P(sol) polarization free energy of solvation -66.863 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.990 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.878 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.984 kcal
(6) G-S(sol) free energy of system = (1) + (5) 4.869 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds