Wall clock time and date at job start Mon Mar 30 2020 03:37:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.08998 * 109.46282 * 2 1
4 4 C 1.53138 * 109.46035 * 240.00233 * 2 1 3
5 5 C 1.53365 * 109.49293 * 169.70228 * 4 2 1
6 6 C 1.50823 * 108.38615 * 49.95033 * 5 4 2
7 7 C 1.35752 * 124.11805 * 343.47495 * 6 5 4
8 8 C 1.39292 * 107.98488 * 179.77701 * 7 6 5
9 9 N 1.31071 * 108.08537 * 0.07489 * 8 7 6
10 10 N 1.34318 * 128.03306 * 163.34684 * 6 5 4
11 11 C 1.46499 * 126.09592 * 0.19459 * 10 6 5
12 12 C 1.50843 * 124.11199 * 359.76115 * 7 6 5
13 13 O 1.42891 * 109.68111 * 223.71576 * 12 7 6
14 14 C 1.50701 * 109.68186 * 103.19250 * 12 7 6
15 15 H 1.08002 * 119.99761 * 239.99544 * 14 12 7
16 16 C 1.37871 * 119.99694 * 60.28106 * 14 12 7
17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 12
18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 12
19 19 H 1.48504 * 109.47209 * 89.99886 * 18 16 14
20 20 H 1.48501 * 109.47358 * 209.99377 * 18 16 14
21 21 H 1.48496 * 109.47341 * 329.99989 * 18 16 14
22 22 H 1.09007 * 109.47081 * 300.02212 * 1 2 3
23 23 H 1.09003 * 109.47181 * 60.01575 * 1 2 3
24 24 H 1.08995 * 109.47629 * 180.02562 * 1 2 3
25 25 H 1.09004 * 109.46192 * 49.70158 * 4 2 1
26 26 H 1.09000 * 109.47788 * 289.71082 * 4 2 1
27 27 H 1.09004 * 109.68050 * 290.22359 * 5 4 2
28 28 H 1.09005 * 109.71307 * 169.69693 * 5 4 2
29 29 H 1.08002 * 125.95713 * 180.02562 * 8 7 6
30 30 H 1.09001 * 109.46572 * 270.01414 * 11 10 6
31 31 H 1.09004 * 109.46907 * 30.01104 * 11 10 6
32 32 H 1.08997 * 109.47453 * 150.01346 * 11 10 6
33 33 H 0.96707 * 113.99760 * 299.47350 * 13 12 7
34 34 H 0.96995 * 120.00207 * 179.97438 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8931 1.0277 0.0000
4 6 2.0401 -0.7219 -1.2505
5 6 3.5518 -0.5024 -1.3872
6 6 4.2013 -0.8280 -0.0655
7 6 3.5284 -0.9284 1.1093
8 6 4.4485 -1.2444 2.1063
9 7 5.6339 -1.3300 1.5537
10 7 5.4993 -1.0693 0.1816
11 6 6.5816 -1.0623 -0.8056
12 6 2.0410 -0.7226 1.2525
13 8 1.7742 0.0718 2.4098
14 6 1.3543 -2.0577 1.3839
15 1 0.6120 -2.3568 0.6586
16 6 1.6693 -2.8945 2.4333
17 7 2.5731 -2.5302 3.3165
18 14 0.8125 -4.5460 2.6006
19 1 1.5854 -5.5811 1.8682
20 1 0.7265 -4.9159 4.0362
21 1 -0.5555 -4.4539 2.0304
22 1 -0.3633 0.5142 0.8898
23 1 -0.3634 0.5136 -0.8901
24 1 -0.3634 -1.0276 0.0005
25 1 1.5344 -0.3250 -2.1307
26 1 1.8344 -1.7888 -1.1636
27 1 3.7497 0.5375 -1.6472
28 1 3.9497 -1.1567 -2.1629
29 1 4.2242 -1.3922 3.1524
30 1 6.6970 -2.0617 -1.2253
31 1 6.3416 -0.3589 -1.6029
32 1 7.5115 -0.7613 -0.3232
33 1 2.0799 -0.3239 3.2376
34 1 2.7945 -3.1188 4.0550
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260787434.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:37:34
Heat of formation + Delta-G solvation = 24.639037 kcal
Electronic energy + Delta-G solvation = -17917.824505 eV
Core-core repulsion = 15238.294633 eV
Total energy + Delta-G solvation = -2679.529872 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-40.40034 -37.01005 -34.30121 -32.25640 -31.94946 -30.54064 -28.03277 -26.36468
-25.39544 -23.88891 -21.93690 -19.68405 -19.59816 -18.07124 -16.50929 -15.85986
-15.04579 -14.79815 -14.13335 -13.84227 -13.26276 -13.04128 -12.78218 -12.74184
-12.16915 -11.95019 -11.83725 -11.47029 -11.22576 -11.09210 -10.89074 -10.69297
-10.35237 -10.27062 -9.98826 -9.76415 -9.52832 -9.08204 -8.52148 -8.14139
-8.05634 -6.99603 -6.06655 -4.19965 2.92588 3.26855 3.33940 3.36189
3.50305 4.25346 4.36942 5.16394 5.19226 5.35743 5.53143 5.59489
5.61895 5.73554 5.93849 6.04876 6.19386 6.30826 6.36147 6.53413
6.56154 6.69256 6.86229 6.91831 7.06511 7.17654 7.24804 7.40243
7.77460 7.87897 8.07541 8.14775 8.24036 8.81727 8.95847 9.47707
9.60541 10.91249
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.021742 B = 0.012774 C = 0.010069
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1287.514907 B = 2191.464371 C = 2780.067079
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C -0.069 4.069
3 H 0.051 0.949
4 C -0.101 4.101
5 C -0.043 4.043
6 C 0.039 3.961
7 C -0.190 4.190
8 C 0.099 3.901
9 N -0.347 5.347
10 N -0.395 5.395
11 C 0.113 3.887
12 C 0.321 3.679
13 O -0.587 6.587
14 C -0.516 4.516
15 H 0.066 0.934
16 C 0.070 3.930
17 N -0.896 5.896
18 Si 0.898 3.102
19 H -0.283 1.283
20 H -0.286 1.286
21 H -0.274 1.274
22 H 0.054 0.946
23 H 0.028 0.972
24 H 0.063 0.937
25 H 0.057 0.943
26 H 0.076 0.924
27 H 0.066 0.934
28 H 0.062 0.938
29 H 0.205 0.795
30 H 0.058 0.942
31 H 0.072 0.928
32 H 0.076 0.924
33 H 0.379 0.621
34 H 0.266 0.734
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.104 2.868 -7.402 8.212
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C -0.088 4.088
3 H 0.069 0.931
4 C -0.139 4.139
5 C -0.082 4.082
6 C -0.087 4.087
7 C -0.201 4.201
8 C -0.085 4.085
9 N -0.169 5.169
10 N -0.179 5.179
11 C -0.030 4.030
12 C 0.280 3.720
13 O -0.396 6.396
14 C -0.554 4.554
15 H 0.084 0.916
16 C -0.130 4.130
17 N -0.537 5.537
18 Si 0.727 3.273
19 H -0.209 1.209
20 H -0.211 1.211
21 H -0.199 1.199
22 H 0.074 0.926
23 H 0.047 0.953
24 H 0.081 0.919
25 H 0.075 0.925
26 H 0.095 0.905
27 H 0.084 0.916
28 H 0.080 0.920
29 H 0.221 0.779
30 H 0.076 0.924
31 H 0.091 0.909
32 H 0.095 0.905
33 H 0.229 0.771
34 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges 3.267 2.976 -7.590 8.783
hybrid contribution -0.716 -1.447 0.323 1.647
sum 2.551 1.529 -7.268 7.853
Atomic orbital electron populations
1.21709 0.95565 1.02019 0.99514 1.20978 0.95532 0.97905 0.94376
0.93065 1.21557 0.92692 1.02464 0.97224 1.20144 0.96166 1.00209
0.91710 1.20705 0.84721 1.05768 0.97491 1.21008 0.98943 1.09201
0.90974 1.24488 0.87839 0.94008 1.02179 1.77400 1.24237 1.28342
0.86964 1.47954 1.05104 1.57872 1.06953 1.21479 0.89729 1.01605
0.90163 1.16998 0.84435 0.88087 0.82494 1.86116 1.84522 1.50471
1.18441 1.21753 1.21557 1.01828 1.10238 0.91584 1.24938 0.94297
0.98129 0.95676 1.69395 1.31819 1.37871 1.14627 0.86494 0.79869
0.83713 0.77271 1.20947 1.21131 1.19881 0.92647 0.95258 0.91854
0.92480 0.90531 0.91581 0.91960 0.77867 0.92376 0.90924 0.90517
0.77099 0.92370
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.53 8.71 37.15 0.32 -2.21 16
2 C -0.07 -1.45 2.15 -90.36 -0.19 -1.64 16
3 H 0.05 1.07 8.11 -51.93 -0.42 0.65 16
4 C -0.10 -1.84 5.17 -26.47 -0.14 -1.97 16
5 C -0.04 -0.75 5.83 -27.63 -0.16 -0.91 16
6 C 0.04 0.84 6.73 -82.33 -0.55 0.28 16
7 C -0.19 -4.65 4.66 -105.05 -0.49 -5.14 16
8 C 0.10 2.48 9.95 -17.48 -0.17 2.30 16
9 N -0.35 -8.32 12.59 30.54 0.38 -7.93 16
10 N -0.39 -8.29 4.00 -63.88 -0.26 -8.54 16
11 C 0.11 1.68 11.32 59.85 0.68 2.35 16
12 C 0.32 7.81 0.56 -92.66 -0.05 7.76 16
13 O -0.59 -15.07 12.73 -35.23 -0.45 -15.52 16
14 C -0.52 -13.28 6.76 -34.44 -0.23 -13.51 16
15 H 0.07 1.68 5.78 -52.49 -0.30 1.38 16
16 C 0.07 1.81 5.22 -17.82 -0.09 1.72 16
17 N -0.90 -23.08 7.60 55.43 0.42 -22.66 16
18 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16
19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16
20 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16
21 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16
22 H 0.05 1.12 8.00 -51.93 -0.42 0.71 16
23 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16
24 H 0.06 1.27 6.09 -51.93 -0.32 0.95 16
25 H 0.06 0.86 8.11 -51.93 -0.42 0.44 16
26 H 0.08 1.52 7.15 -51.93 -0.37 1.15 16
27 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16
28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16
29 H 0.21 5.17 5.96 -52.49 -0.31 4.86 16
30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16
31 H 0.07 0.88 7.90 -51.93 -0.41 0.47 16
32 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16
33 H 0.38 9.80 6.90 45.56 0.31 10.11 16
34 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16
LS Contribution 267.85 15.07 4.04 4.04
Total: -1.00 -29.15 267.85 -5.88 -35.02
By element:
Atomic # 1 Polarization: 14.81 SS G_CDS: -3.91 Total: 10.90 kcal
Atomic # 6 Polarization: -9.87 SS G_CDS: -1.09 Total: -10.96 kcal
Atomic # 7 Polarization: -39.69 SS G_CDS: 0.55 Total: -39.14 kcal
Atomic # 8 Polarization: -15.07 SS G_CDS: -0.45 Total: -15.52 kcal
Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal
Total LS contribution 4.04 Total: 4.04 kcal
Total: -29.15 -5.88 -35.02 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260787434.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 59.663 kcal
(2) G-P(sol) polarization free energy of solvation -29.149 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.514 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.875 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.024 kcal
(6) G-S(sol) free energy of system = (1) + (5) 24.639 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds