Wall clock time and date at job start Mon Mar 30 2020 03:37:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.08998 * 109.46282 * 2 1
4 4 C 1.53138 * 109.46035 * 240.00233 * 2 1 3
5 5 C 1.53365 * 109.49293 * 169.70228 * 4 2 1
6 6 C 1.50823 * 108.38615 * 49.95033 * 5 4 2
7 7 C 1.35752 * 124.11805 * 343.47495 * 6 5 4
8 8 C 1.39292 * 107.98488 * 179.77701 * 7 6 5
9 9 N 1.31071 * 108.08537 * 0.07489 * 8 7 6
10 10 N 1.34318 * 128.03306 * 163.34684 * 6 5 4
11 11 C 1.46499 * 126.09592 * 0.19459 * 10 6 5
12 12 C 1.50843 * 124.11199 * 359.76115 * 7 6 5
13 13 O 1.42891 * 109.68111 * 223.71576 * 12 7 6
14 14 C 1.50701 * 109.68186 * 103.19250 * 12 7 6
15 15 H 1.08002 * 119.99761 * 239.99544 * 14 12 7
16 16 C 1.37871 * 119.99694 * 60.28106 * 14 12 7
17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 12
18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 12
19 19 H 1.48504 * 109.47209 * 89.99886 * 18 16 14
20 20 H 1.48501 * 109.47358 * 209.99377 * 18 16 14
21 21 H 1.48496 * 109.47341 * 329.99989 * 18 16 14
22 22 H 1.09007 * 109.47081 * 300.02212 * 1 2 3
23 23 H 1.09003 * 109.47181 * 60.01575 * 1 2 3
24 24 H 1.08995 * 109.47629 * 180.02562 * 1 2 3
25 25 H 1.09004 * 109.46192 * 49.70158 * 4 2 1
26 26 H 1.09000 * 109.47788 * 289.71082 * 4 2 1
27 27 H 1.09004 * 109.68050 * 290.22359 * 5 4 2
28 28 H 1.09005 * 109.71307 * 169.69693 * 5 4 2
29 29 H 1.08002 * 125.95713 * 180.02562 * 8 7 6
30 30 H 1.09001 * 109.46572 * 270.01414 * 11 10 6
31 31 H 1.09004 * 109.46907 * 30.01104 * 11 10 6
32 32 H 1.08997 * 109.47453 * 150.01346 * 11 10 6
33 33 H 0.96707 * 113.99760 * 299.47350 * 13 12 7
34 34 H 0.96995 * 120.00207 * 179.97438 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8931 1.0277 0.0000
4 6 2.0401 -0.7219 -1.2505
5 6 3.5518 -0.5024 -1.3872
6 6 4.2013 -0.8280 -0.0655
7 6 3.5284 -0.9284 1.1093
8 6 4.4485 -1.2444 2.1063
9 7 5.6339 -1.3300 1.5537
10 7 5.4993 -1.0693 0.1816
11 6 6.5816 -1.0623 -0.8056
12 6 2.0410 -0.7226 1.2525
13 8 1.7742 0.0718 2.4098
14 6 1.3543 -2.0577 1.3839
15 1 0.6120 -2.3568 0.6586
16 6 1.6693 -2.8945 2.4333
17 7 2.5731 -2.5302 3.3165
18 14 0.8125 -4.5460 2.6006
19 1 1.5854 -5.5811 1.8682
20 1 0.7265 -4.9159 4.0362
21 1 -0.5555 -4.4539 2.0304
22 1 -0.3633 0.5142 0.8898
23 1 -0.3634 0.5136 -0.8901
24 1 -0.3634 -1.0276 0.0005
25 1 1.5344 -0.3250 -2.1307
26 1 1.8344 -1.7888 -1.1636
27 1 3.7497 0.5375 -1.6472
28 1 3.9497 -1.1567 -2.1629
29 1 4.2242 -1.3922 3.1524
30 1 6.6970 -2.0617 -1.2253
31 1 6.3416 -0.3589 -1.6029
32 1 7.5115 -0.7613 -0.3232
33 1 2.0799 -0.3239 3.2376
34 1 2.7945 -3.1188 4.0550
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260787434.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:37:33
Heat of formation + Delta-G solvation = 4.712891 kcal
Electronic energy + Delta-G solvation = -17918.688568 eV
Core-core repulsion = 15238.294633 eV
Total energy + Delta-G solvation = -2680.393935 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-42.07606 -38.71840 -35.99610 -34.06766 -33.67726 -32.08500 -29.74785 -27.91386
-27.11545 -25.49866 -23.53851 -21.33336 -21.31418 -19.78033 -18.34143 -17.51152
-16.90627 -16.28758 -15.90046 -15.44830 -14.90369 -14.62424 -14.37183 -14.29254
-13.65092 -13.44734 -13.36603 -13.10880 -12.92539 -12.77092 -12.64472 -12.42730
-12.05440 -11.97079 -11.58393 -11.44201 -11.17131 -10.86167 -10.40389 -10.03172
-9.73827 -8.74556 -7.97263 -6.17942 1.24520 1.42130 1.44648 1.52033
2.02685 2.40749 2.47756 3.20984 3.89893 3.96121 4.04310 4.21682
4.40818 4.47983 4.62781 4.66087 4.76567 4.80140 4.84140 4.94534
5.06098 5.17537 5.26961 5.34765 5.37674 5.54895 5.65517 5.72425
5.93153 6.02634 6.24772 6.35696 6.58301 6.88590 7.19617 7.50696
7.60709 8.95806
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.021742 B = 0.012774 C = 0.010069
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1287.514907 B = 2191.464371 C = 2780.067079
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.125 4.125
2 C -0.072 4.072
3 H 0.049 0.951
4 C -0.096 4.096
5 C -0.041 4.041
6 C 0.047 3.953
7 C -0.232 4.232
8 C 0.076 3.924
9 N -0.373 5.373
10 N -0.389 5.389
11 C 0.099 3.901
12 C 0.308 3.692
13 O -0.599 6.599
14 C -0.526 4.526
15 H 0.064 0.936
16 C 0.027 3.973
17 N -0.905 5.905
18 Si 0.949 3.051
19 H -0.289 1.289
20 H -0.286 1.286
21 H -0.269 1.269
22 H 0.034 0.966
23 H 0.066 0.934
24 H 0.050 0.950
25 H 0.098 0.902
26 H 0.055 0.945
27 H 0.095 0.905
28 H 0.095 0.905
29 H 0.187 0.813
30 H 0.074 0.926
31 H 0.109 0.891
32 H 0.086 0.914
33 H 0.371 0.629
34 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.332 3.190 -10.353 11.081
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.182 4.182
2 C -0.091 4.091
3 H 0.067 0.933
4 C -0.134 4.134
5 C -0.079 4.079
6 C -0.081 4.081
7 C -0.243 4.243
8 C -0.107 4.107
9 N -0.196 5.196
10 N -0.173 5.173
11 C -0.041 4.041
12 C 0.268 3.732
13 O -0.407 6.407
14 C -0.564 4.564
15 H 0.082 0.918
16 C -0.172 4.172
17 N -0.547 5.547
18 Si 0.777 3.223
19 H -0.216 1.216
20 H -0.212 1.212
21 H -0.194 1.194
22 H 0.054 0.946
23 H 0.085 0.915
24 H 0.069 0.931
25 H 0.116 0.884
26 H 0.074 0.926
27 H 0.113 0.887
28 H 0.113 0.887
29 H 0.203 0.797
30 H 0.093 0.907
31 H 0.128 0.872
32 H 0.105 0.895
33 H 0.220 0.780
34 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges 3.510 3.302 -10.549 11.598
hybrid contribution -0.714 -1.514 1.191 2.055
sum 2.795 1.788 -9.358 9.929
Atomic orbital electron populations
1.21639 0.94772 1.01435 1.00358 1.21036 0.96316 0.97617 0.94131
0.93300 1.21533 0.93760 1.00924 0.97179 1.20353 0.95041 1.02652
0.89883 1.21371 0.84819 1.03332 0.98588 1.21143 0.99169 1.11789
0.92211 1.24291 0.88849 0.95547 1.02024 1.77279 1.23868 1.29374
0.89103 1.48397 1.06424 1.55842 1.06625 1.21986 0.88514 1.03812
0.89799 1.17278 0.84953 0.87900 0.83086 1.86101 1.84706 1.51066
1.18834 1.21983 1.21576 1.02744 1.10140 0.91805 1.25572 0.95063
1.00631 0.95945 1.69543 1.32240 1.38245 1.14633 0.85706 0.79093
0.80647 0.76903 1.21550 1.21174 1.19356 0.94641 0.91549 0.93065
0.88368 0.92642 0.88664 0.88709 0.79681 0.90704 0.87219 0.89483
0.77968 0.92750
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -4.64 8.71 71.98 0.63 -4.01 16
2 C -0.07 -2.90 2.15 -10.63 -0.02 -2.92 16
3 H 0.05 1.96 8.11 -2.39 -0.02 1.94 16
4 C -0.10 -3.14 5.17 30.76 0.16 -2.98 16
5 C -0.04 -1.22 5.83 30.01 0.17 -1.05 16
6 C 0.05 1.94 6.73 41.64 0.28 2.22 16
7 C -0.23 -11.39 4.66 -20.14 -0.09 -11.48 16
8 C 0.08 3.90 9.95 85.06 0.85 4.74 16
9 N -0.37 -17.91 12.59 -57.28 -0.72 -18.63 16
10 N -0.39 -15.53 4.00 -356.01 -1.42 -16.96 16
11 C 0.10 2.56 11.32 127.77 1.45 4.01 16
12 C 0.31 15.13 0.56 -12.12 -0.01 15.13 16
13 O -0.60 -31.83 12.73 -148.98 -1.90 -33.73 16
14 C -0.53 -27.42 6.76 25.60 0.17 -27.24 16
15 H 0.06 3.26 5.78 -2.91 -0.02 3.25 16
16 C 0.03 1.41 5.22 84.65 0.44 1.85 16
17 N -0.91 -48.39 7.60 21.45 0.16 -48.22 16
18 Si 0.95 43.07 29.54 68.60 2.03 45.10 16
19 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16
20 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16
21 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16
22 H 0.03 1.41 8.00 -2.38 -0.02 1.40 16
23 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16
24 H 0.05 2.00 6.09 -2.39 -0.01 1.99 16
25 H 0.10 2.43 8.11 -2.39 -0.02 2.41 16
26 H 0.05 2.06 7.15 -2.39 -0.02 2.04 16
27 H 0.10 2.40 8.14 -2.38 -0.02 2.38 16
28 H 0.09 2.30 8.14 -2.38 -0.02 2.28 16
29 H 0.19 10.00 5.96 -2.91 -0.02 9.98 16
30 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16
31 H 0.11 2.05 7.90 -2.38 -0.02 2.03 16
32 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16
33 H 0.37 20.29 6.90 -74.05 -0.51 19.78 16
34 H 0.26 13.63 8.31 -92.71 -0.77 12.86 16
Total: -1.00 -64.82 267.85 2.77 -62.05
By element:
Atomic # 1 Polarization: 31.55 SS G_CDS: 0.60 Total: 32.15 kcal
Atomic # 6 Polarization: -25.78 SS G_CDS: 4.02 Total: -21.75 kcal
Atomic # 7 Polarization: -81.83 SS G_CDS: -1.98 Total: -83.82 kcal
Atomic # 8 Polarization: -31.83 SS G_CDS: -1.90 Total: -33.73 kcal
Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal
Total: -64.82 2.77 -62.05 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260787434.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 66.762 kcal
(2) G-P(sol) polarization free energy of solvation -64.821 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.941 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.772 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.049 kcal
(6) G-S(sol) free energy of system = (1) + (5) 4.713 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds