Wall clock time and date at job start Mon Mar 30 2020 03:37:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09000 * 109.45778 * 2 1
4 4 C 1.53267 * 109.50354 * 120.04898 * 2 1 3
5 5 C 1.53358 * 109.49303 * 190.29963 * 4 2 1
6 6 C 1.50827 * 108.38464 * 310.02426 * 5 4 2
7 7 C 1.35749 * 124.11753 * 16.52618 * 6 5 4
8 8 C 1.39296 * 107.98710 * 180.22264 * 7 6 5
9 9 N 1.31072 * 108.07864 * 359.92879 * 8 7 6
10 10 N 1.34324 * 128.03316 * 196.65158 * 6 5 4
11 11 C 1.46496 * 126.09314 * 359.79617 * 10 6 5
12 12 C 1.50841 * 124.11174 * 0.26035 * 7 6 5
13 13 O 1.42900 * 109.67883 * 256.79820 * 12 7 6
14 14 C 1.50703 * 109.68176 * 136.28634 * 12 7 6
15 15 H 1.08002 * 119.99633 * 121.71499 * 14 12 7
16 16 C 1.37876 * 119.99927 * 301.71124 * 14 12 7
17 17 N 1.31513 * 119.99840 * 6.08560 * 16 14 12
18 18 Si 1.86799 * 119.99730 * 186.08254 * 16 14 12
19 19 H 1.48499 * 109.46990 * 90.00296 * 18 16 14
20 20 H 1.48506 * 109.46796 * 210.00010 * 18 16 14
21 21 H 1.48497 * 109.47335 * 330.00120 * 18 16 14
22 22 H 1.09002 * 109.47155 * 179.97438 * 1 2 3
23 23 H 1.08999 * 109.46966 * 299.97863 * 1 2 3
24 24 H 1.08998 * 109.47089 * 59.98222 * 1 2 3
25 25 H 1.08997 * 109.50009 * 70.26964 * 4 2 1
26 26 H 1.09002 * 109.44141 * 310.28913 * 4 2 1
27 27 H 1.08998 * 109.68474 * 190.30353 * 5 4 2
28 28 H 1.09003 * 109.68660 * 69.74799 * 5 4 2
29 29 H 1.08000 * 125.95922 * 179.97438 * 8 7 6
30 30 H 1.08995 * 109.46991 * 269.94728 * 11 10 6
31 31 H 1.09000 * 109.46938 * 29.95229 * 11 10 6
32 32 H 1.09006 * 109.46967 * 149.95030 * 11 10 6
33 33 H 0.96700 * 114.00385 * 299.48664 * 13 12 7
34 34 H 0.97003 * 119.99676 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8931 1.0277 0.0000
4 6 2.0417 -0.7234 1.2506
5 6 3.5533 -0.5034 1.3865
6 6 4.2021 -0.8283 0.0642
7 6 3.5286 -0.9283 -1.1102
8 6 4.4481 -1.2435 -2.1079
9 7 5.6339 -1.3291 -1.5560
10 7 5.5001 -1.0690 -0.1838
11 6 6.5830 -1.0618 0.8028
12 6 2.0411 -0.7225 -1.2525
13 8 1.3900 -1.9884 -1.3773
14 6 1.7590 0.1157 -2.4727
15 1 1.1269 -0.2704 -3.2587
16 6 2.3079 1.3755 -2.5856
17 7 3.1715 1.7992 -1.6888
18 14 1.8249 2.4802 -4.0123
19 1 0.6471 3.2988 -3.6278
20 1 2.9603 3.3753 -4.3516
21 1 1.4835 1.6449 -5.1917
22 1 -0.3633 -1.0277 -0.0005
23 1 -0.3633 0.5135 0.8902
24 1 -0.3633 0.5141 -0.8898
25 1 1.8362 -1.7903 1.1634
26 1 1.5363 -0.3271 2.1313
27 1 3.9515 -1.1585 2.1614
28 1 3.7511 0.5364 1.6468
29 1 4.2234 -1.3908 -3.1539
30 1 7.0045 -0.0590 0.8723
31 1 6.1906 -1.3593 1.7752
32 1 7.3598 -1.7619 0.4948
33 1 1.6732 -2.5024 -2.1459
34 1 3.5574 2.6856 -1.7680
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260787437.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:37:36
Heat of formation + Delta-G solvation = 22.205312 kcal
Electronic energy + Delta-G solvation = -17965.207760 eV
Core-core repulsion = 15285.572354 eV
Total energy + Delta-G solvation = -2679.635407 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-40.39827 -36.99724 -33.98394 -32.70661 -32.02763 -30.25841 -28.07719 -26.46865
-25.13950 -23.85318 -21.73540 -19.67227 -19.62498 -17.86177 -16.81106 -15.79024
-14.87873 -14.74555 -14.29163 -13.68207 -13.32726 -13.10459 -12.65229 -12.50888
-12.21059 -12.06848 -11.76677 -11.68011 -11.16547 -10.95279 -10.90358 -10.61446
-10.37201 -10.11851 -9.82711 -9.67623 -9.48771 -9.00134 -8.39243 -8.28105
-8.13738 -7.01083 -5.94207 -4.09152 2.95849 3.29725 3.37746 3.39931
3.46731 4.13087 4.42382 5.19558 5.28699 5.48511 5.56580 5.73780
5.78070 5.82354 5.96600 6.12088 6.25297 6.38772 6.48351 6.51024
6.74404 6.83062 6.91666 6.95344 7.09140 7.31439 7.47993 7.59585
7.78496 7.86274 8.08474 8.14896 8.33090 8.72811 8.84946 9.24874
9.60885 11.02662
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.022628 B = 0.012786 C = 0.010177
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1237.120017 B = 2189.415627 C = 2750.752606
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.126 4.126
2 C -0.069 4.069
3 H 0.101 0.899
4 C -0.108 4.108
5 C -0.042 4.042
6 C 0.072 3.928
7 C -0.167 4.167
8 C 0.072 3.928
9 N -0.333 5.333
10 N -0.386 5.386
11 C 0.112 3.888
12 C 0.322 3.678
13 O -0.578 6.578
14 C -0.539 4.539
15 H 0.061 0.939
16 C 0.076 3.924
17 N -0.865 5.865
18 Si 0.884 3.116
19 H -0.281 1.281
20 H -0.289 1.289
21 H -0.274 1.274
22 H 0.046 0.954
23 H 0.025 0.975
24 H 0.056 0.944
25 H 0.060 0.940
26 H 0.050 0.950
27 H 0.055 0.945
28 H 0.072 0.928
29 H 0.167 0.833
30 H 0.061 0.939
31 H 0.074 0.926
32 H 0.076 0.924
33 H 0.357 0.643
34 H 0.257 0.743
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.643 -3.611 5.712 6.954
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.183 4.183
2 C -0.088 4.088
3 H 0.119 0.881
4 C -0.146 4.146
5 C -0.081 4.081
6 C -0.053 4.053
7 C -0.178 4.178
8 C -0.112 4.112
9 N -0.155 5.155
10 N -0.170 5.170
11 C -0.031 4.031
12 C 0.282 3.718
13 O -0.383 6.383
14 C -0.577 4.577
15 H 0.079 0.921
16 C -0.128 4.128
17 N -0.501 5.501
18 Si 0.713 3.287
19 H -0.207 1.207
20 H -0.215 1.215
21 H -0.199 1.199
22 H 0.065 0.935
23 H 0.044 0.956
24 H 0.075 0.925
25 H 0.078 0.922
26 H 0.069 0.931
27 H 0.073 0.927
28 H 0.091 0.909
29 H 0.184 0.816
30 H 0.079 0.921
31 H 0.092 0.908
32 H 0.094 0.906
33 H 0.202 0.798
34 H 0.068 0.932
Dipole moment (debyes) X Y Z Total
from point charges 2.822 -3.450 6.216 7.649
hybrid contribution -0.445 1.005 -1.202 1.629
sum 2.377 -2.445 5.014 6.064
Atomic orbital electron populations
1.21560 0.96694 1.00445 0.99601 1.21206 0.94306 1.01406 0.91892
0.88140 1.21667 0.92857 1.01198 0.98879 1.20134 0.96141 1.00617
0.91201 1.20656 0.84041 1.02983 0.97664 1.20721 0.99259 1.07896
0.89960 1.23253 0.89833 0.98656 0.99480 1.77246 1.22996 1.27712
0.87540 1.47865 1.05447 1.57212 1.06458 1.21514 0.89398 1.02244
0.89940 1.17157 0.81858 0.79525 0.93260 1.86327 1.68458 1.33260
1.50208 1.21555 1.30784 1.00670 1.04694 0.92078 1.24839 0.94198
0.97841 0.95887 1.69994 1.27191 1.18228 1.34674 0.86721 0.78024
0.80883 0.83118 1.20702 1.21511 1.19929 0.93499 0.95624 0.92462
0.92154 0.93089 0.92669 0.90931 0.81584 0.92089 0.90783 0.90560
0.79819 0.93246
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.62 8.79 37.16 0.33 -2.30 16
2 C -0.07 -1.56 1.86 -90.30 -0.17 -1.73 16
3 H 0.10 2.54 6.17 -51.93 -0.32 2.22 16
4 C -0.11 -2.09 5.19 -26.41 -0.14 -2.22 16
5 C -0.04 -0.78 5.90 -27.64 -0.16 -0.95 16
6 C 0.07 1.58 6.73 -82.33 -0.55 1.03 16
7 C -0.17 -3.95 3.54 -105.05 -0.37 -4.32 16
8 C 0.07 1.69 11.56 -17.48 -0.20 1.48 16
9 N -0.33 -7.64 12.59 30.54 0.38 -7.25 16
10 N -0.39 -8.04 4.00 -63.88 -0.26 -8.30 16
11 C 0.11 1.68 11.32 59.84 0.68 2.35 16
12 C 0.32 7.65 0.51 -92.67 -0.05 7.61 16
13 O -0.58 -12.94 11.55 -35.23 -0.41 -13.35 16
14 C -0.54 -13.85 7.26 -34.44 -0.25 -14.10 16
15 H 0.06 1.59 7.82 -52.49 -0.41 1.18 16
16 C 0.08 1.99 5.06 -17.82 -0.09 1.90 16
17 N -0.86 -23.24 10.49 55.43 0.58 -22.66 16
18 Si 0.88 20.70 29.54 -169.99 -5.02 15.68 16
19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16
20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16
21 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16
22 H 0.05 0.96 7.48 -51.93 -0.39 0.57 16
23 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16
24 H 0.06 1.27 7.59 -51.93 -0.39 0.87 16
25 H 0.06 1.19 7.78 -51.93 -0.40 0.79 16
26 H 0.05 0.86 8.11 -51.93 -0.42 0.44 16
27 H 0.05 0.87 7.75 -51.93 -0.40 0.46 16
28 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16
29 H 0.17 3.66 8.06 -52.49 -0.42 3.23 16
30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16
31 H 0.07 0.92 7.57 -51.93 -0.39 0.52 16
32 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16
33 H 0.36 7.03 9.04 45.56 0.41 7.45 16
34 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16
LS Contribution 275.49 15.07 4.15 4.15
Total: -1.00 -29.83 275.49 -5.52 -35.34
By element:
Atomic # 1 Polarization: 11.60 SS G_CDS: -3.97 Total: 7.62 kcal
Atomic # 6 Polarization: -10.26 SS G_CDS: -0.98 Total: -11.24 kcal
Atomic # 7 Polarization: -38.92 SS G_CDS: 0.71 Total: -38.21 kcal
Atomic # 8 Polarization: -12.94 SS G_CDS: -0.41 Total: -13.35 kcal
Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal
Total LS contribution 4.15 Total: 4.15 kcal
Total: -29.83 -5.52 -35.34 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260787437.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 57.548 kcal
(2) G-P(sol) polarization free energy of solvation -29.826 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.723 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.517 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.343 kcal
(6) G-S(sol) free energy of system = (1) + (5) 22.205 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds