Wall clock time and date at job start Mon Mar 30 2020 03:46:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 N 1.46894 * 109.47473 * 2 1
4 4 C 1.48856 * 111.13147 * 285.32028 * 3 2 1
5 5 C 1.54382 * 104.63073 * 201.00447 * 4 3 2
6 6 C 1.54257 * 105.06052 * 23.85208 * 5 4 3
7 7 C 1.48562 * 111.00344 * 169.99909 * 3 2 1
8 8 H 1.09002 * 110.41176 * 40.25880 * 7 3 2
9 9 C 1.50703 * 110.41027 * 277.93542 * 7 3 2
10 10 N 1.29914 * 125.07647 * 136.64907 * 9 7 3
11 11 C 1.36279 * 108.61410 * 180.02562 * 10 9 7
12 12 C 1.41259 * 126.67806 * 179.97438 * 11 10 9
13 13 H 1.08005 * 119.99910 * 359.97438 * 12 11 10
14 14 C 1.39726 * 120.00395 * 179.97438 * 12 11 10
15 15 N 1.30992 * 119.99877 * 359.97438 * 14 12 11
16 16 Si 1.86804 * 120.00118 * 179.97438 * 14 12 11
17 17 H 1.48502 * 109.47013 * 60.00097 * 16 14 12
18 18 H 1.48496 * 109.47023 * 179.97438 * 16 14 12
19 19 H 1.48500 * 109.47018 * 300.00155 * 16 14 12
20 20 C 1.38793 * 106.64669 * 359.97438 * 11 10 9
21 21 O 1.34057 * 125.07978 * 316.34841 * 9 7 3
22 22 H 1.08999 * 109.47145 * 60.00042 * 1 2 3
23 23 H 1.08994 * 109.47464 * 179.97438 * 1 2 3
24 24 H 1.08999 * 109.46851 * 300.00208 * 1 2 3
25 25 H 1.08996 * 109.47570 * 239.99690 * 2 1 3
26 26 H 1.09009 * 109.47170 * 119.99892 * 2 1 3
27 27 H 1.09003 * 110.39541 * 82.21242 * 4 3 2
28 28 H 1.09004 * 110.49212 * 319.84370 * 4 3 2
29 29 H 1.08997 * 110.32536 * 264.95830 * 5 4 3
30 30 H 1.09002 * 110.40960 * 142.79262 * 5 4 3
31 31 H 1.08998 * 110.32238 * 241.10511 * 6 5 4
32 32 H 1.09002 * 110.32308 * 118.90057 * 6 5 4
33 33 H 0.96999 * 120.00440 * 179.97438 * 15 14 12
34 34 H 1.08003 * 126.74326 * 180.02562 * 20 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0197 1.3849 0.0000
4 6 1.8528 2.0131 -1.3391
5 6 2.8548 3.1876 -1.3465
6 6 3.9284 2.8050 -0.3071
7 6 3.4849 1.4316 0.2409
8 1 3.9848 0.6274 -0.2991
9 6 3.7784 1.3345 1.7158
10 7 4.7135 0.6037 2.2445
11 6 4.6808 0.7671 3.5971
12 6 5.5298 0.1496 4.5423
13 1 6.3007 -0.5310 4.2122
14 6 5.3723 0.4194 5.9042
15 7 4.4376 1.2453 6.3044
16 14 6.4946 -0.3977 7.1541
17 1 7.9037 -0.0215 6.8745
18 1 6.1245 0.0520 8.5201
19 1 6.3482 -1.8725 7.0612
20 6 3.6510 1.6582 3.8652
21 8 3.1174 1.9937 2.6779
22 1 -0.3633 0.5138 -0.8900
23 1 -0.3634 -1.0276 -0.0005
24 1 -0.3633 0.5139 0.8900
25 1 1.8934 -0.5138 -0.8899
26 1 1.8934 -0.5139 0.8901
27 1 0.8342 2.3816 -1.4615
28 1 2.0959 1.3010 -2.1277
29 1 2.3568 4.1119 -1.0537
30 1 3.3050 3.2970 -2.3332
31 1 3.9575 3.5415 0.4958
32 1 4.9054 2.7249 -0.7839
33 1 4.3280 1.4323 7.2499
34 1 3.3423 2.0154 4.8365
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260857703.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:46:46
Heat of formation + Delta-G solvation = 9.929913 kcal
Electronic energy + Delta-G solvation = -16820.816070 eV
Core-core repulsion = 14140.648362 eV
Total energy + Delta-G solvation = -2680.167708 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-41.11286 -38.70062 -33.96898 -33.29070 -32.47648 -30.15773 -28.63125 -27.41264
-25.09143 -22.95031 -21.51932 -20.59304 -20.23978 -19.36749 -17.19259 -15.77819
-15.63578 -15.17421 -14.77661 -14.34843 -14.23471 -13.79315 -13.07328 -12.93666
-12.76398 -12.33518 -11.92082 -11.57588 -11.39341 -11.32842 -11.21421 -11.05959
-10.97499 -10.62861 -10.40612 -10.31579 -9.91825 -9.85539 -8.96193 -8.81533
-8.33776 -7.07128 -6.59681 -4.30711 3.07313 3.15314 3.19714 3.21189
4.02273 4.06885 4.24743 4.37953 4.83023 4.94604 5.10023 5.27159
5.35257 5.45646 5.52535 5.61829 5.64361 5.75674 5.80014 5.94144
5.98927 6.05770 6.11139 6.27542 6.33043 6.43234 6.91723 7.12745
7.23692 7.42387 7.45784 7.79137 8.01094 8.51380 8.85293 9.01831
9.70098 10.44815
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.041298 B = 0.006065 C = 0.005748
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 677.830399 B = 4615.628355 C = 4870.490444
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C 0.041 3.959
3 N -0.502 5.502
4 C 0.033 3.967
5 C -0.122 4.122
6 C -0.117 4.117
7 C 0.171 3.829
8 H 0.079 0.921
9 C 0.145 3.855
10 N -0.515 5.515
11 C 0.134 3.866
12 C -0.418 4.418
13 H 0.076 0.924
14 C 0.059 3.941
15 N -0.837 5.837
16 Si 0.930 3.070
17 H -0.268 1.268
18 H -0.280 1.280
19 H -0.268 1.268
20 C -0.190 4.190
21 O -0.212 6.212
22 H 0.050 0.950
23 H 0.055 0.945
24 H 0.064 0.936
25 H 0.035 0.965
26 H 0.077 0.923
27 H 0.081 0.919
28 H 0.043 0.957
29 H 0.072 0.928
30 H 0.068 0.932
31 H 0.078 0.922
32 H 0.073 0.927
33 H 0.278 0.722
34 H 0.229 0.771
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.931 1.465 -11.045 12.184
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.088 4.088
3 N -0.227 5.227
4 C -0.095 4.095
5 C -0.160 4.160
6 C -0.156 4.156
7 C 0.062 3.938
8 H 0.097 0.903
9 C -0.061 4.061
10 N -0.252 5.252
11 C 0.018 3.982
12 C -0.453 4.453
13 H 0.095 0.905
14 C -0.152 4.152
15 N -0.469 5.469
16 Si 0.755 3.245
17 H -0.193 1.193
18 H -0.205 1.205
19 H -0.193 1.193
20 C -0.261 4.261
21 O -0.098 6.098
22 H 0.069 0.931
23 H 0.074 0.926
24 H 0.083 0.917
25 H 0.053 0.947
26 H 0.096 0.904
27 H 0.099 0.901
28 H 0.061 0.939
29 H 0.091 0.909
30 H 0.087 0.913
31 H 0.097 0.903
32 H 0.092 0.908
33 H 0.089 0.911
34 H 0.244 0.756
Dipole moment (debyes) X Y Z Total
from point charges -4.972 1.486 -10.789 11.972
hybrid contribution 0.509 -0.476 0.601 0.920
sum -4.463 1.010 -10.188 11.168
Atomic orbital electron populations
1.21693 0.94752 1.01185 1.02277 1.22233 0.96317 0.89044 1.01174
1.65331 1.13217 1.17471 1.26685 1.23164 1.00231 0.96117 0.89967
1.22293 0.96285 0.98626 0.98786 1.22339 0.98360 0.96138 0.98746
1.20580 0.88637 0.98246 0.86330 0.90296 1.24738 0.93409 0.96377
0.91612 1.70688 1.21367 1.23407 1.09757 1.19345 0.95737 0.96292
0.86868 1.18450 1.14152 1.23518 0.89159 0.90536 1.25645 0.95701
0.94648 0.99191 1.69287 1.29744 1.30738 1.17171 0.86009 0.80277
0.79823 0.78344 1.19302 1.20530 1.19312 1.26697 1.03465 1.09955
0.85965 1.84139 1.52626 1.56847 1.16219 0.93091 0.92556 0.91721
0.94726 0.90429 0.90065 0.93855 0.90880 0.91332 0.90339 0.90782
0.91093 0.75559
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.82 10.03 37.16 0.37 -1.44 16
2 C 0.04 0.62 5.50 -3.83 -0.02 0.60 16
3 N -0.50 -8.30 5.01 -223.24 -1.12 -9.42 16
4 C 0.03 0.41 5.93 -2.01 -0.01 0.40 16
5 C -0.12 -1.46 7.00 -25.35 -0.18 -1.64 16
6 C -0.12 -1.81 6.54 -25.35 -0.17 -1.97 16
7 C 0.17 3.16 2.81 -67.22 -0.19 2.98 16
8 H 0.08 1.41 8.00 -51.93 -0.42 0.99 16
9 C 0.14 3.52 6.64 -13.09 -0.09 3.43 16
10 N -0.51 -14.19 11.36 -8.64 -0.10 -14.29 16
11 C 0.13 3.95 6.89 -84.54 -0.58 3.37 16
12 C -0.42 -12.15 9.49 -37.88 -0.36 -12.51 16
13 H 0.08 2.17 7.84 -52.48 -0.41 1.76 16
14 C 0.06 1.58 5.49 -17.35 -0.10 1.49 16
15 N -0.84 -22.59 10.34 55.54 0.57 -22.02 16
16 Si 0.93 20.11 29.56 -169.99 -5.02 15.09 16
17 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16
18 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16
19 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16
20 C -0.19 -5.43 11.18 30.94 0.35 -5.08 16
21 O -0.21 -5.63 10.72 6.05 0.06 -5.57 16
22 H 0.05 0.57 7.49 -51.93 -0.39 0.18 16
23 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16
24 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16
25 H 0.03 0.47 7.78 -51.93 -0.40 0.07 16
26 H 0.08 1.42 7.78 -51.92 -0.40 1.02 16
27 H 0.08 0.92 7.87 -51.93 -0.41 0.51 16
28 H 0.04 0.49 7.77 -51.93 -0.40 0.08 16
29 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16
30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16
31 H 0.08 1.36 7.85 -51.93 -0.41 0.95 16
32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16
33 H 0.28 6.85 8.30 -40.82 -0.34 6.51 16
34 H 0.23 6.48 5.78 -52.48 -0.30 6.18 16
LS Contribution 282.96 15.07 4.26 4.26
Total: -1.00 -31.08 282.96 -7.10 -38.18
By element:
Atomic # 1 Polarization: 8.94 SS G_CDS: -4.79 Total: 4.15 kcal
Atomic # 6 Polarization: -9.41 SS G_CDS: -0.97 Total: -10.38 kcal
Atomic # 7 Polarization: -45.08 SS G_CDS: -0.64 Total: -45.73 kcal
Atomic # 8 Polarization: -5.63 SS G_CDS: 0.06 Total: -5.57 kcal
Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal
Total LS contribution 4.26 Total: 4.26 kcal
Total: -31.08 -7.10 -38.18 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260857703.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 48.109 kcal
(2) G-P(sol) polarization free energy of solvation -31.076 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.033 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.103 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.179 kcal
(6) G-S(sol) free energy of system = (1) + (5) 9.930 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds