Wall clock time and date at job start Mon Mar 30 2020 03:46:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 N 1.46894 * 109.47473 * 2 1
4 4 C 1.48856 * 111.13147 * 285.32028 * 3 2 1
5 5 C 1.54382 * 104.63073 * 201.00447 * 4 3 2
6 6 C 1.54257 * 105.06052 * 23.85208 * 5 4 3
7 7 C 1.48562 * 111.00344 * 169.99909 * 3 2 1
8 8 H 1.09002 * 110.41176 * 40.25880 * 7 3 2
9 9 C 1.50703 * 110.41027 * 277.93542 * 7 3 2
10 10 N 1.29914 * 125.07647 * 136.64907 * 9 7 3
11 11 C 1.36279 * 108.61410 * 180.02562 * 10 9 7
12 12 C 1.41259 * 126.67806 * 179.97438 * 11 10 9
13 13 H 1.08005 * 119.99910 * 359.97438 * 12 11 10
14 14 C 1.39726 * 120.00395 * 179.97438 * 12 11 10
15 15 N 1.30992 * 119.99877 * 359.97438 * 14 12 11
16 16 Si 1.86804 * 120.00118 * 179.97438 * 14 12 11
17 17 H 1.48502 * 109.47013 * 60.00097 * 16 14 12
18 18 H 1.48496 * 109.47023 * 179.97438 * 16 14 12
19 19 H 1.48500 * 109.47018 * 300.00155 * 16 14 12
20 20 C 1.38793 * 106.64669 * 359.97438 * 11 10 9
21 21 O 1.34057 * 125.07978 * 316.34841 * 9 7 3
22 22 H 1.08999 * 109.47145 * 60.00042 * 1 2 3
23 23 H 1.08994 * 109.47464 * 179.97438 * 1 2 3
24 24 H 1.08999 * 109.46851 * 300.00208 * 1 2 3
25 25 H 1.08996 * 109.47570 * 239.99690 * 2 1 3
26 26 H 1.09009 * 109.47170 * 119.99892 * 2 1 3
27 27 H 1.09003 * 110.39541 * 82.21242 * 4 3 2
28 28 H 1.09004 * 110.49212 * 319.84370 * 4 3 2
29 29 H 1.08997 * 110.32536 * 264.95830 * 5 4 3
30 30 H 1.09002 * 110.40960 * 142.79262 * 5 4 3
31 31 H 1.08998 * 110.32238 * 241.10511 * 6 5 4
32 32 H 1.09002 * 110.32308 * 118.90057 * 6 5 4
33 33 H 0.96999 * 120.00440 * 179.97438 * 15 14 12
34 34 H 1.08003 * 126.74326 * 180.02562 * 20 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0197 1.3849 0.0000
4 6 1.8528 2.0131 -1.3391
5 6 2.8548 3.1876 -1.3465
6 6 3.9284 2.8050 -0.3071
7 6 3.4849 1.4316 0.2409
8 1 3.9848 0.6274 -0.2991
9 6 3.7784 1.3345 1.7158
10 7 4.7135 0.6037 2.2445
11 6 4.6808 0.7671 3.5971
12 6 5.5298 0.1496 4.5423
13 1 6.3007 -0.5310 4.2122
14 6 5.3723 0.4194 5.9042
15 7 4.4376 1.2453 6.3044
16 14 6.4946 -0.3977 7.1541
17 1 7.9037 -0.0215 6.8745
18 1 6.1245 0.0520 8.5201
19 1 6.3482 -1.8725 7.0612
20 6 3.6510 1.6582 3.8652
21 8 3.1174 1.9937 2.6779
22 1 -0.3633 0.5138 -0.8900
23 1 -0.3634 -1.0276 -0.0005
24 1 -0.3633 0.5139 0.8900
25 1 1.8934 -0.5138 -0.8899
26 1 1.8934 -0.5139 0.8901
27 1 0.8342 2.3816 -1.4615
28 1 2.0959 1.3010 -2.1277
29 1 2.3568 4.1119 -1.0537
30 1 3.3050 3.2970 -2.3332
31 1 3.9575 3.5415 0.4958
32 1 4.9054 2.7249 -0.7839
33 1 4.3280 1.4323 7.2499
34 1 3.3423 2.0154 4.8365
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260857703.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:46:46
Heat of formation + Delta-G solvation = -13.716986 kcal
Electronic energy + Delta-G solvation = -16821.841477 eV
Core-core repulsion = 14140.648362 eV
Total energy + Delta-G solvation = -2681.193114 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-43.16185 -39.95793 -36.08220 -34.64034 -34.36649 -31.74866 -29.82155 -29.20794
-27.10257 -24.21644 -23.07393 -22.45890 -21.50293 -21.17956 -19.12387 -17.53709
-17.04097 -16.86388 -16.70460 -16.03218 -15.61085 -15.09676 -14.84428 -14.36419
-14.06148 -13.86171 -13.46854 -13.13171 -13.03860 -12.64373 -12.56014 -12.41234
-12.27456 -12.11943 -11.90953 -11.88646 -11.80084 -11.44510 -10.99616 -10.96865
-9.55308 -9.21002 -8.64569 -6.50918 1.14263 1.38169 1.41003 1.52857
2.15665 2.21324 2.52476 2.82601 3.32686 3.60193 3.67234 3.87371
4.03493 4.17455 4.30094 4.35416 4.54902 4.56488 4.69316 4.83426
4.92790 4.95460 5.00505 5.05827 5.12077 5.26245 5.30492 5.35064
5.37215 5.63544 5.79976 5.84974 6.05855 6.32247 6.72158 6.85719
7.57366 8.40992
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.041298 B = 0.006065 C = 0.005748
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 677.830399 B = 4615.628355 C = 4870.490444
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C 0.040 3.960
3 N -0.523 5.523
4 C 0.034 3.966
5 C -0.111 4.111
6 C -0.116 4.116
7 C 0.165 3.835
8 H 0.086 0.914
9 C 0.171 3.829
10 N -0.550 5.550
11 C 0.108 3.892
12 C -0.461 4.461
13 H 0.071 0.929
14 C 0.019 3.981
15 N -0.854 5.854
16 Si 1.010 2.990
17 H -0.261 1.261
18 H -0.262 1.262
19 H -0.262 1.262
20 C -0.229 4.229
21 O -0.221 6.221
22 H 0.075 0.925
23 H 0.071 0.929
24 H 0.043 0.957
25 H 0.057 0.943
26 H 0.034 0.966
27 H 0.099 0.901
28 H 0.065 0.935
29 H 0.077 0.923
30 H 0.103 0.897
31 H 0.052 0.948
32 H 0.091 0.909
33 H 0.290 0.710
34 H 0.221 0.779
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.103 1.441 -12.427 13.511
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C -0.089 4.089
3 N -0.249 5.249
4 C -0.093 4.093
5 C -0.149 4.149
6 C -0.155 4.155
7 C 0.056 3.944
8 H 0.104 0.896
9 C -0.036 4.036
10 N -0.287 5.287
11 C -0.006 4.006
12 C -0.495 4.495
13 H 0.089 0.911
14 C -0.191 4.191
15 N -0.485 5.485
16 Si 0.830 3.170
17 H -0.186 1.186
18 H -0.185 1.185
19 H -0.186 1.186
20 C -0.298 4.298
21 O -0.108 6.108
22 H 0.094 0.906
23 H 0.090 0.910
24 H 0.062 0.938
25 H 0.075 0.925
26 H 0.053 0.947
27 H 0.117 0.883
28 H 0.084 0.916
29 H 0.096 0.904
30 H 0.121 0.879
31 H 0.071 0.929
32 H 0.109 0.891
33 H 0.101 0.899
34 H 0.237 0.763
Dipole moment (debyes) X Y Z Total
from point charges -5.162 1.475 -12.176 13.308
hybrid contribution 0.511 -0.454 0.949 1.170
sum -4.652 1.021 -11.227 12.195
Atomic orbital electron populations
1.21643 0.92694 1.02348 1.02417 1.22250 0.97971 0.88534 1.00096
1.65296 1.11312 1.18317 1.29978 1.23319 1.01505 0.96343 0.88088
1.22309 0.94919 0.98493 0.99158 1.22356 1.00707 0.93344 0.99058
1.20893 0.90786 1.00493 0.82263 0.89593 1.26099 0.90873 0.93024
0.93648 1.70698 1.23390 1.25334 1.09243 1.19783 0.96213 0.96654
0.87998 1.18782 1.15016 1.24908 0.90761 0.91076 1.26742 0.97081
0.94691 1.00548 1.69350 1.30221 1.30487 1.18441 0.84835 0.77863
0.78700 0.75651 1.18558 1.18545 1.18644 1.26448 1.04893 1.11973
0.86528 1.84115 1.53043 1.57470 1.16177 0.90646 0.90968 0.93751
0.92526 0.94713 0.88256 0.91640 0.90411 0.87893 0.92950 0.89067
0.89886 0.76311
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.20 10.03 71.98 0.72 -2.48 16
2 C 0.04 1.18 5.50 86.30 0.47 1.66 16
3 N -0.52 -16.63 5.01 -860.19 -4.31 -20.94 16
4 C 0.03 0.73 5.93 86.39 0.51 1.24 16
5 C -0.11 -2.27 7.00 31.49 0.22 -2.05 16
6 C -0.12 -3.41 6.54 31.49 0.21 -3.20 16
7 C 0.17 6.04 2.81 44.32 0.12 6.16 16
8 H 0.09 3.00 8.00 -2.39 -0.02 2.98 16
9 C 0.17 8.62 6.64 88.39 0.59 9.21 16
10 N -0.55 -31.65 11.36 -296.17 -3.36 -35.01 16
11 C 0.11 6.73 6.89 39.33 0.27 7.00 16
12 C -0.46 -27.86 9.49 23.37 0.22 -27.63 16
13 H 0.07 4.20 7.84 -2.91 -0.02 4.18 16
14 C 0.02 1.03 5.49 85.18 0.47 1.49 16
15 N -0.85 -47.00 10.34 21.79 0.23 -46.77 16
16 Si 1.01 41.02 29.56 68.60 2.03 43.05 16
17 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16
18 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16
19 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16
20 C -0.23 -13.79 11.18 67.95 0.76 -13.03 16
21 O -0.22 -12.28 10.72 -1.25 -0.01 -12.30 16
22 H 0.07 1.44 7.49 -2.39 -0.02 1.42 16
23 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16
24 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16
25 H 0.06 1.42 7.78 -2.39 -0.02 1.40 16
26 H 0.03 1.31 7.78 -2.38 -0.02 1.29 16
27 H 0.10 1.82 7.87 -2.39 -0.02 1.80 16
28 H 0.07 1.15 7.77 -2.39 -0.02 1.14 16
29 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16
30 H 0.10 1.46 8.14 -2.39 -0.02 1.45 16
31 H 0.05 1.81 7.85 -2.39 -0.02 1.79 16
32 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16
33 H 0.29 14.29 8.30 -92.71 -0.77 13.52 16
34 H 0.22 13.30 5.78 -2.91 -0.02 13.28 16
Total: -1.00 -71.33 282.96 0.21 -71.12
By element:
Atomic # 1 Polarization: 21.40 SS G_CDS: 1.08 Total: 22.48 kcal
Atomic # 6 Polarization: -26.20 SS G_CDS: 4.57 Total: -21.63 kcal
Atomic # 7 Polarization: -95.27 SS G_CDS: -7.45 Total: -102.72 kcal
Atomic # 8 Polarization: -12.28 SS G_CDS: -0.01 Total: -12.30 kcal
Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.05 kcal
Total: -71.33 0.21 -71.12 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260857703.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 57.402 kcal
(2) G-P(sol) polarization free energy of solvation -71.332 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.931 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.214 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.119 kcal
(6) G-S(sol) free energy of system = (1) + (5) -13.717 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds