Wall clock time and date at job start Mon Mar 30 2020 03:46:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 N 1.46899 * 109.47108 * 2 1
4 4 C 1.47440 * 110.99988 * 54.22485 * 3 2 1
5 5 C 1.54317 * 107.23480 * 123.25404 * 4 3 2
6 6 C 1.55251 * 103.08555 * 22.20330 * 5 4 3
7 7 C 1.47852 * 110.99940 * 175.06423 * 3 2 1
8 8 H 1.09006 * 110.37224 * 332.57852 * 7 3 2
9 9 C 1.50704 * 110.37212 * 94.80642 * 7 3 2
10 10 N 1.29906 * 125.07861 * 223.74194 * 9 7 3
11 11 C 1.36283 * 108.61704 * 180.13536 * 10 9 7
12 12 C 1.41254 * 126.67619 * 179.86132 * 11 10 9
13 13 H 1.08000 * 120.00375 * 351.51053 * 12 11 10
14 14 C 1.39732 * 119.99764 * 171.50706 * 12 11 10
15 15 N 1.31000 * 120.00225 * 4.51920 * 14 12 11
16 16 Si 1.86803 * 120.00134 * 184.51218 * 14 12 11
17 17 H 1.48502 * 109.46761 * 94.93751 * 16 14 12
18 18 H 1.48496 * 109.47348 * 214.93776 * 16 14 12
19 19 H 1.48496 * 109.47040 * 334.94512 * 16 14 12
20 20 C 1.38796 * 106.64384 * 359.60215 * 11 10 9
21 21 O 1.34060 * 125.07881 * 43.42675 * 9 7 3
22 22 H 1.09000 * 109.47250 * 294.34604 * 1 2 3
23 23 H 1.08997 * 109.47389 * 54.35076 * 1 2 3
24 24 H 1.08998 * 109.47343 * 174.34967 * 1 2 3
25 25 H 1.09004 * 109.46877 * 240.00297 * 2 1 3
26 26 H 1.09002 * 109.47499 * 120.00582 * 2 1 3
27 27 H 1.09002 * 109.88775 * 242.65953 * 4 3 2
28 28 H 1.09001 * 109.88633 * 3.68517 * 4 3 2
29 29 H 1.08997 * 110.70336 * 140.67063 * 5 4 3
30 30 H 1.09005 * 110.70622 * 263.72539 * 5 4 3
31 31 H 1.09003 * 111.09269 * 206.38395 * 6 5 4
32 32 H 1.09008 * 110.94464 * 82.52859 * 6 5 4
33 33 H 0.96997 * 119.99640 * 180.02562 * 15 14 12
34 34 H 1.08004 * 126.74487 * 180.20861 * 20 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0196 1.3850 0.0000
4 6 1.4371 2.1514 1.1168
5 6 2.6104 2.7106 1.9486
6 6 3.7904 2.7055 0.9398
7 6 3.4928 1.4261 0.1188
8 1 3.8558 0.5438 0.6461
9 6 4.1267 1.5186 -1.2453
10 7 5.1607 0.8361 -1.6359
11 6 5.4508 1.1831 -2.9215
12 6 6.5023 0.6747 -3.7159
13 1 7.2548 0.0389 -3.2732
14 6 6.5689 0.9942 -5.0745
15 7 5.7084 1.8353 -5.5926
16 14 7.8849 0.2222 -6.1523
17 1 7.3314 -0.9809 -6.8242
18 1 8.3242 1.2033 -7.1768
19 1 9.0452 -0.1697 -5.3125
20 6 4.5083 2.1290 -3.3003
21 8 3.7042 2.3132 -2.2390
22 1 -0.3634 0.4236 0.9363
23 1 -0.3634 0.5989 -0.8350
24 1 -0.3634 -1.0226 -0.1012
25 1 1.8933 -0.5138 -0.8901
26 1 1.8934 -0.5139 0.8899
27 1 0.8336 2.9718 0.7284
28 1 0.8206 1.4974 1.7335
29 1 2.3949 3.7246 2.2856
30 1 2.8250 2.0613 2.7975
31 1 4.7472 2.6245 1.4557
32 1 3.7645 3.5914 0.3052
33 1 5.7545 2.0568 -6.5358
34 1 4.4355 2.6207 -4.2591
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260857707.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:46:48
Heat of formation + Delta-G solvation = 12.082950 kcal
Electronic energy + Delta-G solvation = -16792.163215 eV
Core-core repulsion = 14112.088870 eV
Total energy + Delta-G solvation = -2680.074345 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-41.08153 -38.85103 -33.94330 -33.28850 -32.44171 -30.22666 -28.50525 -27.42672
-25.11939 -23.13140 -21.64162 -20.47179 -20.11375 -19.29539 -17.12758 -16.22377
-15.61747 -15.16990 -14.71232 -14.34440 -14.12884 -13.57126 -13.30586 -13.04426
-12.88188 -12.16728 -11.86686 -11.56852 -11.48930 -11.24647 -11.15716 -11.08293
-10.94889 -10.77302 -10.59624 -10.32275 -9.92136 -9.77270 -8.94255 -8.78795
-8.14236 -7.03837 -6.58191 -4.28709 3.06318 3.17046 3.22098 3.23389
4.02010 4.09151 4.27076 4.40837 4.85492 4.86157 5.03969 5.22267
5.34225 5.39133 5.51039 5.57004 5.60406 5.66418 5.84682 5.91388
5.97456 6.04577 6.12423 6.23842 6.26407 6.40290 7.01614 7.18649
7.29170 7.46005 7.47859 7.81267 8.02497 8.53583 8.87517 9.04062
9.72403 10.46733
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.042707 B = 0.005919 C = 0.005654
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 655.477056 B = 4729.643603 C = 4950.780058
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C 0.047 3.953
3 N -0.522 5.522
4 C 0.042 3.958
5 C -0.142 4.142
6 C -0.120 4.120
7 C 0.181 3.819
8 H 0.083 0.917
9 C 0.148 3.852
10 N -0.516 5.516
11 C 0.134 3.866
12 C -0.419 4.419
13 H 0.077 0.923
14 C 0.059 3.941
15 N -0.837 5.837
16 Si 0.929 3.071
17 H -0.273 1.273
18 H -0.279 1.279
19 H -0.265 1.265
20 C -0.189 4.189
21 O -0.213 6.213
22 H 0.053 0.947
23 H 0.065 0.935
24 H 0.058 0.942
25 H 0.077 0.923
26 H 0.032 0.968
27 H 0.077 0.923
28 H 0.058 0.942
29 H 0.075 0.925
30 H 0.066 0.934
31 H 0.079 0.921
32 H 0.081 0.919
33 H 0.277 0.723
34 H 0.227 0.773
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.462 0.407 10.332 12.752
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.080 4.080
3 N -0.248 5.248
4 C -0.085 4.085
5 C -0.180 4.180
6 C -0.159 4.159
7 C 0.072 3.928
8 H 0.100 0.900
9 C -0.059 4.059
10 N -0.253 5.253
11 C 0.018 3.982
12 C -0.453 4.453
13 H 0.095 0.905
14 C -0.152 4.152
15 N -0.469 5.469
16 Si 0.754 3.246
17 H -0.199 1.199
18 H -0.205 1.205
19 H -0.189 1.189
20 C -0.260 4.260
21 O -0.099 6.099
22 H 0.072 0.928
23 H 0.084 0.916
24 H 0.077 0.923
25 H 0.095 0.905
26 H 0.050 0.950
27 H 0.095 0.905
28 H 0.077 0.923
29 H 0.094 0.906
30 H 0.085 0.915
31 H 0.098 0.902
32 H 0.100 0.900
33 H 0.088 0.912
34 H 0.243 0.757
Dipole moment (debyes) X Y Z Total
from point charges -7.419 0.317 10.040 12.488
hybrid contribution 0.506 -0.302 -0.469 0.754
sum -6.913 0.015 9.571 11.806
Atomic orbital electron populations
1.21877 0.94973 1.01716 1.02168 1.22237 0.95674 0.89081 1.01051
1.63367 1.05169 1.12739 1.43496 1.22856 0.96749 0.97934 0.91010
1.22823 0.95522 1.01717 0.97937 1.22766 0.98295 0.97931 0.96890
1.20480 0.86377 0.98680 0.87282 0.89953 1.24821 0.94910 0.94190
0.91940 1.70685 1.14742 1.25612 1.14249 1.19348 0.96625 0.94759
0.87506 1.18482 1.07631 1.27046 0.92191 0.90498 1.25648 0.96776
0.94456 0.98290 1.69345 1.34082 1.29324 1.14188 0.85958 0.80519
0.78994 0.79104 1.19865 1.20458 1.18875 1.26603 0.97610 1.10032
0.91726 1.84128 1.50500 1.54123 1.21120 0.92800 0.91622 0.92332
0.90452 0.94950 0.90517 0.92328 0.90601 0.91485 0.90240 0.90013
0.91215 0.75737
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.77 9.55 37.16 0.35 -1.42 16
2 C 0.05 0.70 5.57 -3.83 -0.02 0.68 16
3 N -0.52 -8.63 4.92 -224.75 -1.10 -9.74 16
4 C 0.04 0.53 6.20 -2.84 -0.02 0.52 16
5 C -0.14 -1.64 6.94 -24.85 -0.17 -1.81 16
6 C -0.12 -1.83 6.49 -24.54 -0.16 -1.99 16
7 C 0.18 3.34 2.98 -67.34 -0.20 3.13 16
8 H 0.08 1.47 7.69 -51.93 -0.40 1.07 16
9 C 0.15 3.61 7.17 -13.09 -0.09 3.52 16
10 N -0.52 -14.28 11.36 -8.64 -0.10 -14.38 16
11 C 0.13 3.97 6.88 -84.54 -0.58 3.39 16
12 C -0.42 -12.23 9.48 -37.88 -0.36 -12.59 16
13 H 0.08 2.20 7.85 -52.49 -0.41 1.79 16
14 C 0.06 1.59 5.49 -17.35 -0.10 1.50 16
15 N -0.84 -22.74 10.39 55.54 0.58 -22.16 16
16 Si 0.93 20.22 29.56 -169.99 -5.03 15.19 16
17 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16
18 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16
19 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16
20 C -0.19 -5.42 11.17 30.94 0.35 -5.08 16
21 O -0.21 -5.66 10.72 6.05 0.06 -5.60 16
22 H 0.05 0.55 6.37 -51.93 -0.33 0.22 16
23 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16
24 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16
25 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16
26 H 0.03 0.43 7.97 -51.93 -0.41 0.02 16
27 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16
28 H 0.06 0.63 5.95 -51.93 -0.31 0.32 16
29 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16
30 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16
31 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16
32 H 0.08 1.36 8.05 -51.92 -0.42 0.95 16
33 H 0.28 6.84 8.30 -40.82 -0.34 6.50 16
34 H 0.23 6.46 5.84 -52.48 -0.31 6.15 16
LS Contribution 281.21 15.07 4.24 4.24
Total: -1.00 -31.42 281.21 -7.03 -38.45
By element:
Atomic # 1 Polarization: 8.83 SS G_CDS: -4.68 Total: 4.14 kcal
Atomic # 6 Polarization: -9.15 SS G_CDS: -1.00 Total: -10.15 kcal
Atomic # 7 Polarization: -45.65 SS G_CDS: -0.63 Total: -46.28 kcal
Atomic # 8 Polarization: -5.66 SS G_CDS: 0.06 Total: -5.60 kcal
Atomic # 14 Polarization: 20.22 SS G_CDS: -5.03 Total: 15.19 kcal
Total LS contribution 4.24 Total: 4.24 kcal
Total: -31.42 -7.03 -38.45 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260857707.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 50.537 kcal
(2) G-P(sol) polarization free energy of solvation -31.422 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.115 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.032 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.454 kcal
(6) G-S(sol) free energy of system = (1) + (5) 12.083 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds