Wall clock time and date at job start Mon Mar 30 2020 03:46:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 N 1.46899 * 109.47108 * 2 1
4 4 C 1.47440 * 110.99988 * 54.22485 * 3 2 1
5 5 C 1.54317 * 107.23480 * 123.25404 * 4 3 2
6 6 C 1.55251 * 103.08555 * 22.20330 * 5 4 3
7 7 C 1.47852 * 110.99940 * 175.06423 * 3 2 1
8 8 H 1.09006 * 110.37224 * 332.57852 * 7 3 2
9 9 C 1.50704 * 110.37212 * 94.80642 * 7 3 2
10 10 N 1.29906 * 125.07861 * 223.74194 * 9 7 3
11 11 C 1.36283 * 108.61704 * 180.13536 * 10 9 7
12 12 C 1.41254 * 126.67619 * 179.86132 * 11 10 9
13 13 H 1.08000 * 120.00375 * 351.51053 * 12 11 10
14 14 C 1.39732 * 119.99764 * 171.50706 * 12 11 10
15 15 N 1.31000 * 120.00225 * 4.51920 * 14 12 11
16 16 Si 1.86803 * 120.00134 * 184.51218 * 14 12 11
17 17 H 1.48502 * 109.46761 * 94.93751 * 16 14 12
18 18 H 1.48496 * 109.47348 * 214.93776 * 16 14 12
19 19 H 1.48496 * 109.47040 * 334.94512 * 16 14 12
20 20 C 1.38796 * 106.64384 * 359.60215 * 11 10 9
21 21 O 1.34060 * 125.07881 * 43.42675 * 9 7 3
22 22 H 1.09000 * 109.47250 * 294.34604 * 1 2 3
23 23 H 1.08997 * 109.47389 * 54.35076 * 1 2 3
24 24 H 1.08998 * 109.47343 * 174.34967 * 1 2 3
25 25 H 1.09004 * 109.46877 * 240.00297 * 2 1 3
26 26 H 1.09002 * 109.47499 * 120.00582 * 2 1 3
27 27 H 1.09002 * 109.88775 * 242.65953 * 4 3 2
28 28 H 1.09001 * 109.88633 * 3.68517 * 4 3 2
29 29 H 1.08997 * 110.70336 * 140.67063 * 5 4 3
30 30 H 1.09005 * 110.70622 * 263.72539 * 5 4 3
31 31 H 1.09003 * 111.09269 * 206.38395 * 6 5 4
32 32 H 1.09008 * 110.94464 * 82.52859 * 6 5 4
33 33 H 0.96997 * 119.99640 * 180.02562 * 15 14 12
34 34 H 1.08004 * 126.74487 * 180.20861 * 20 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0196 1.3850 0.0000
4 6 1.4371 2.1514 1.1168
5 6 2.6104 2.7106 1.9486
6 6 3.7904 2.7055 0.9398
7 6 3.4928 1.4261 0.1188
8 1 3.8558 0.5438 0.6461
9 6 4.1267 1.5186 -1.2453
10 7 5.1607 0.8361 -1.6359
11 6 5.4508 1.1831 -2.9215
12 6 6.5023 0.6747 -3.7159
13 1 7.2548 0.0389 -3.2732
14 6 6.5689 0.9942 -5.0745
15 7 5.7084 1.8353 -5.5926
16 14 7.8849 0.2222 -6.1523
17 1 7.3314 -0.9809 -6.8242
18 1 8.3242 1.2033 -7.1768
19 1 9.0452 -0.1697 -5.3125
20 6 4.5083 2.1290 -3.3003
21 8 3.7042 2.3132 -2.2390
22 1 -0.3634 0.4236 0.9363
23 1 -0.3634 0.5989 -0.8350
24 1 -0.3634 -1.0226 -0.1012
25 1 1.8933 -0.5138 -0.8901
26 1 1.8934 -0.5139 0.8899
27 1 0.8336 2.9718 0.7284
28 1 0.8206 1.4974 1.7335
29 1 2.3949 3.7246 2.2856
30 1 2.8250 2.0613 2.7975
31 1 4.7472 2.6245 1.4557
32 1 3.7645 3.5914 0.3052
33 1 5.7545 2.0568 -6.5358
34 1 4.4355 2.6207 -4.2591
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260857707.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:46:48
Heat of formation + Delta-G solvation = -11.824313 kcal
Electronic energy + Delta-G solvation = -16793.199912 eV
Core-core repulsion = 14112.088870 eV
Total energy + Delta-G solvation = -2681.111042 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-43.13741 -40.08992 -36.06556 -34.65049 -34.29546 -31.77772 -29.75203 -29.15588
-27.13456 -24.35890 -23.16420 -22.44200 -21.44000 -20.98139 -19.06198 -17.53523
-17.36772 -16.83920 -16.73788 -16.08870 -15.31757 -15.09213 -14.81079 -14.45288
-14.11069 -13.99588 -13.29805 -13.10813 -13.03786 -12.59643 -12.51257 -12.38128
-12.28100 -12.14917 -11.87151 -11.85839 -11.82474 -11.62236 -10.99073 -10.94331
-9.35262 -9.18690 -8.64218 -6.49910 1.15142 1.38394 1.40000 1.55169
2.16110 2.22292 2.55044 2.82056 3.33111 3.61163 3.67075 3.90643
4.04650 4.18052 4.22829 4.30750 4.55861 4.56796 4.64343 4.88898
4.90088 4.97356 5.00536 5.07871 5.11606 5.27172 5.33207 5.36444
5.38613 5.64862 5.86056 5.92063 6.14611 6.33277 6.73532 6.86941
7.58902 8.41989
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.042707 B = 0.005919 C = 0.005654
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 655.477056 B = 4729.643603 C = 4950.780058
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C 0.045 3.955
3 N -0.547 5.547
4 C 0.041 3.959
5 C -0.125 4.125
6 C -0.119 4.119
7 C 0.175 3.825
8 H 0.089 0.911
9 C 0.173 3.827
10 N -0.551 5.551
11 C 0.108 3.892
12 C -0.461 4.461
13 H 0.070 0.930
14 C 0.019 3.981
15 N -0.854 5.854
16 Si 1.010 2.990
17 H -0.263 1.263
18 H -0.261 1.261
19 H -0.261 1.261
20 C -0.227 4.227
21 O -0.221 6.221
22 H 0.078 0.922
23 H 0.050 0.950
24 H 0.073 0.927
25 H 0.039 0.961
26 H 0.051 0.949
27 H 0.078 0.922
28 H 0.086 0.914
29 H 0.099 0.901
30 H 0.090 0.910
31 H 0.089 0.911
32 H 0.061 0.939
33 H 0.289 0.711
34 H 0.219 0.781
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.979 0.170 11.590 14.073
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.082 4.082
3 N -0.273 5.273
4 C -0.086 4.086
5 C -0.163 4.163
6 C -0.158 4.158
7 C 0.066 3.934
8 H 0.107 0.893
9 C -0.035 4.035
10 N -0.287 5.287
11 C -0.007 4.007
12 C -0.495 4.495
13 H 0.089 0.911
14 C -0.191 4.191
15 N -0.486 5.486
16 Si 0.829 3.171
17 H -0.188 1.188
18 H -0.185 1.185
19 H -0.185 1.185
20 C -0.297 4.297
21 O -0.108 6.108
22 H 0.097 0.903
23 H 0.069 0.931
24 H 0.092 0.908
25 H 0.058 0.942
26 H 0.069 0.931
27 H 0.097 0.903
28 H 0.104 0.896
29 H 0.118 0.882
30 H 0.108 0.892
31 H 0.107 0.893
32 H 0.080 0.920
33 H 0.100 0.900
34 H 0.235 0.765
Dipole moment (debyes) X Y Z Total
from point charges -7.957 0.095 11.300 13.821
hybrid contribution 0.597 -0.220 -0.810 1.030
sum -7.360 -0.125 10.490 12.815
Atomic orbital electron populations
1.21822 0.92472 1.02699 1.02824 1.22265 0.97684 0.88196 1.00080
1.63219 1.03718 1.14134 1.46188 1.22982 0.97311 0.98030 0.90264
1.22808 0.92645 1.03720 0.97156 1.22773 1.00776 0.95086 0.97198
1.20778 0.87949 1.00781 0.83928 0.89292 1.26244 0.93190 0.90997
0.93080 1.70696 1.16739 1.27357 1.13951 1.19789 0.97195 0.95146
0.88552 1.18794 1.08220 1.28600 0.93872 0.91124 1.26745 0.99149
0.94297 0.98877 1.69404 1.34866 1.29060 1.15246 0.84777 0.77005
0.78370 0.76906 1.18821 1.18543 1.18496 1.26353 0.99088 1.11740
0.92517 1.84106 1.50530 1.54878 1.21307 0.90318 0.93127 0.90802
0.94236 0.93112 0.90321 0.89565 0.88223 0.89168 0.89257 0.92015
0.89959 0.76493
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.03 9.55 71.98 0.69 -2.34 16
2 C 0.05 1.30 5.57 86.30 0.48 1.78 16
3 N -0.55 -17.45 4.92 -864.97 -4.25 -21.71 16
4 C 0.04 0.90 6.20 86.65 0.54 1.43 16
5 C -0.13 -2.43 6.94 31.81 0.22 -2.21 16
6 C -0.12 -3.47 6.49 32.02 0.21 -3.26 16
7 C 0.18 6.40 2.98 44.64 0.13 6.53 16
8 H 0.09 3.11 7.69 -2.38 -0.02 3.09 16
9 C 0.17 8.73 7.17 88.39 0.63 9.36 16
10 N -0.55 -31.80 11.36 -296.18 -3.36 -35.17 16
11 C 0.11 6.73 6.88 39.33 0.27 7.00 16
12 C -0.46 -27.97 9.48 23.37 0.22 -27.75 16
13 H 0.07 4.20 7.85 -2.91 -0.02 4.18 16
14 C 0.02 1.02 5.49 85.18 0.47 1.49 16
15 N -0.85 -47.29 10.39 21.80 0.23 -47.06 16
16 Si 1.01 41.26 29.56 68.60 2.03 43.29 16
17 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16
18 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16
19 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16
20 C -0.23 -13.74 11.17 67.95 0.76 -12.98 16
21 O -0.22 -12.31 10.72 -1.26 -0.01 -12.32 16
22 H 0.08 1.30 6.37 -2.39 -0.02 1.29 16
23 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16
24 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16
25 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16
26 H 0.05 1.25 7.97 -2.39 -0.02 1.23 16
27 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16
28 H 0.09 1.45 5.95 -2.39 -0.01 1.44 16
29 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16
30 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16
31 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16
32 H 0.06 2.03 8.05 -2.38 -0.02 2.02 16
33 H 0.29 14.30 8.30 -92.71 -0.77 13.53 16
34 H 0.22 13.22 5.84 -2.91 -0.02 13.20 16
Total: -1.00 -71.91 281.21 0.33 -71.57
By element:
Atomic # 1 Polarization: 21.24 SS G_CDS: 1.09 Total: 22.33 kcal
Atomic # 6 Polarization: -25.56 SS G_CDS: 4.62 Total: -20.94 kcal
Atomic # 7 Polarization: -96.54 SS G_CDS: -7.39 Total: -103.93 kcal
Atomic # 8 Polarization: -12.31 SS G_CDS: -0.01 Total: -12.32 kcal
Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.29 kcal
Total: -71.91 0.33 -71.57 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260857707.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 59.747 kcal
(2) G-P(sol) polarization free energy of solvation -71.905 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.158 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.334 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.571 kcal
(6) G-S(sol) free energy of system = (1) + (5) -11.824 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds