Wall clock time and date at job start Mon Mar 30 2020 03:20:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53008 * 109.47475 * 2 1
4 4 C 1.50700 * 109.47299 * 240.00418 * 2 1 3
5 5 H 1.08003 * 120.00055 * 240.00563 * 4 2 1
6 6 C 1.37875 * 119.99926 * 59.99202 * 4 2 1
7 7 N 1.31507 * 120.00305 * 0.02562 * 6 4 2
8 8 Si 1.86806 * 119.99713 * 180.02562 * 6 4 2
9 9 H 1.48505 * 109.47087 * 60.00797 * 8 6 4
10 10 H 1.48506 * 109.47044 * 180.02562 * 8 6 4
11 11 H 1.48497 * 109.47550 * 300.00462 * 8 6 4
12 12 C 1.50701 * 109.47435 * 119.99990 * 2 1 3
13 13 N 1.35304 * 126.20260 * 119.99681 * 12 2 1
14 14 H 0.97006 * 125.99230 * 359.97380 * 13 12 2
15 15 N 1.40415 * 108.01472 * 179.97438 * 13 12 2
16 16 C 1.29747 * 108.08477 * 359.96833 * 15 13 12
17 17 C 1.34256 * 126.20404 * 300.00164 * 12 2 1
18 18 C 1.50893 * 129.41297 * 0.28165 * 17 12 2
19 19 O 1.43458 * 107.71687 * 164.66296 * 18 17 12
20 20 C 1.42915 * 114.63553 * 51.45596 * 19 18 17
21 21 C 1.51027 * 129.49917 * 180.11399 * 16 15 13
22 22 H 1.09002 * 109.46790 * 299.99894 * 1 2 3
23 23 H 1.08994 * 109.47100 * 59.99946 * 1 2 3
24 24 H 1.08997 * 109.47208 * 180.02562 * 1 2 3
25 25 H 1.08995 * 109.47198 * 179.97438 * 3 2 1
26 26 H 1.08997 * 109.46742 * 300.00834 * 3 2 1
27 27 H 1.09009 * 109.46689 * 59.99672 * 3 2 1
28 28 H 0.97002 * 120.00438 * 179.97438 * 7 6 4
29 29 H 1.08993 * 109.81224 * 45.10518 * 18 17 12
30 30 H 1.09002 * 109.80383 * 284.21404 * 18 17 12
31 31 H 1.09002 * 109.39411 * 47.72144 * 20 19 18
32 32 H 1.09004 * 109.39364 * 167.44152 * 20 19 18
33 33 H 1.09002 * 109.85136 * 44.65364 * 21 16 15
34 34 H 1.08999 * 109.84722 * 283.66823 * 21 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0323 -0.7103 -1.2305
5 1 2.6532 -1.5885 -1.1315
6 6 1.6991 -0.2393 -2.4827
7 7 0.9434 0.8302 -2.6034
8 14 2.3213 -1.1202 -4.0080
9 1 1.8258 -2.5201 -4.0078
10 1 1.8268 -0.4198 -5.2205
11 1 3.8063 -1.1208 -4.0083
12 6 2.0324 -0.7104 1.2304
13 7 2.8134 -1.8150 1.2526
14 1 3.1496 -2.2911 0.4771
15 7 3.0521 -2.1513 2.5948
16 6 2.4406 -1.2846 3.3420
17 6 1.7861 -0.3620 2.5034
18 6 0.9674 0.7857 3.0413
19 8 0.7110 0.5266 4.4288
20 6 1.8727 0.2176 5.2017
21 6 2.3774 -1.1894 4.8480
22 1 -0.3633 0.5138 0.8900
23 1 -0.3633 0.5138 -0.8899
24 1 -0.3633 -1.0276 0.0005
25 1 3.1300 1.4425 0.0005
26 1 1.6766 1.9564 -0.8899
27 1 1.6767 1.9564 0.8900
28 1 0.7092 1.1618 -3.4844
29 1 0.0250 0.8539 2.4979
30 1 1.5236 1.7173 2.9361
31 1 2.6540 0.9471 4.9882
32 1 1.6229 0.2566 6.2620
33 1 3.3704 -1.3432 5.2705
34 1 1.6885 -1.9388 5.2376
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260867276.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:20:45
Heat of formation + Delta-G solvation = 19.027014 kcal
Electronic energy + Delta-G solvation = -17417.281391 eV
Core-core repulsion = 14737.508163 eV
Total energy + Delta-G solvation = -2679.773228 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-40.95565 -37.67553 -35.68650 -32.39604 -31.56062 -30.17960 -28.53777 -25.80739
-25.33891 -25.11146 -23.13343 -21.08849 -19.29548 -18.23564 -17.04948 -16.06085
-15.37162 -15.17163 -14.90809 -14.38868 -13.96068 -13.46380 -13.05450 -12.77722
-12.37015 -12.20216 -11.86235 -11.40788 -11.30217 -11.14824 -10.91074 -10.71886
-10.57690 -10.33497 -10.07771 -9.89034 -9.73516 -9.30386 -8.95354 -8.62312
-8.50516 -7.59244 -6.18442 -4.32203 2.71942 3.18568 3.24266 3.26461
3.35583 3.58470 4.18190 4.24316 4.96209 5.09328 5.15092 5.43201
5.52867 5.77473 5.84884 5.89133 6.03462 6.08770 6.17277 6.45335
6.57673 6.71827 6.77729 6.87134 6.95825 7.18534 7.25516 7.42889
7.50939 7.54171 7.85900 7.90598 8.11195 8.16355 8.45356 8.65547
9.35129 10.82409
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.041200 B = 0.007854 C = 0.006951
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 679.442071 B = 3564.428958 C = 4027.387856
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C 0.117 3.883
3 C -0.125 4.125
4 C -0.525 4.525
5 H 0.050 0.950
6 C 0.074 3.926
7 N -0.878 5.878
8 Si 0.893 3.107
9 H -0.276 1.276
10 H -0.284 1.284
11 H -0.277 1.277
12 C 0.175 3.825
13 N -0.474 5.474
14 H 0.439 0.561
15 N -0.314 5.314
16 C 0.076 3.924
17 C -0.319 4.319
18 C 0.149 3.851
19 O -0.386 6.386
20 C 0.068 3.932
21 C -0.067 4.067
22 H 0.021 0.979
23 H 0.092 0.908
24 H 0.027 0.973
25 H 0.026 0.974
26 H 0.092 0.908
27 H 0.019 0.981
28 H 0.265 0.735
29 H 0.102 0.898
30 H 0.053 0.947
31 H 0.051 0.949
32 H 0.094 0.906
33 H 0.083 0.917
34 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.938 0.467 9.192 9.251
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.185 4.185
2 C 0.115 3.885
3 C -0.184 4.184
4 C -0.563 4.563
5 H 0.068 0.932
6 C -0.129 4.129
7 N -0.515 5.515
8 Si 0.721 3.279
9 H -0.202 1.202
10 H -0.210 1.210
11 H -0.202 1.202
12 C 0.046 3.954
13 N -0.182 5.182
14 H 0.285 0.715
15 N -0.136 5.136
16 C -0.093 4.093
17 C -0.330 4.330
18 C 0.072 3.928
19 O -0.304 6.304
20 C -0.010 4.010
21 C -0.106 4.106
22 H 0.040 0.960
23 H 0.111 0.889
24 H 0.047 0.953
25 H 0.046 0.954
26 H 0.110 0.890
27 H 0.038 0.962
28 H 0.075 0.925
29 H 0.120 0.880
30 H 0.071 0.929
31 H 0.069 0.931
32 H 0.112 0.888
33 H 0.102 0.898
34 H 0.103 0.897
Dipole moment (debyes) X Y Z Total
from point charges 1.416 -0.461 9.110 9.231
hybrid contribution 0.446 -0.258 -1.518 1.603
sum 1.863 -0.719 7.592 7.850
Atomic orbital electron populations
1.21834 0.95926 0.99678 1.01079 1.17071 0.93055 0.91987 0.86368
1.21802 0.98626 0.96822 1.01107 1.20825 1.32741 1.12351 0.90365
0.93155 1.24826 0.94463 0.94765 0.98819 1.69765 1.35658 1.22222
1.23827 0.86633 0.79244 0.79848 0.82205 1.20183 1.20957 1.20209
1.21409 0.89816 0.87176 0.96963 1.46529 1.42020 1.23860 1.05790
0.71483 1.76657 1.25348 1.23865 0.87707 1.21896 0.97126 0.94219
0.96077 1.20178 1.14399 1.05983 0.92467 1.21085 0.98938 0.93070
0.79724 1.87918 1.31561 1.90232 1.20728 1.22497 0.88820 0.94150
0.95487 1.20701 1.02199 0.99193 0.88504 0.96010 0.88948 0.95340
0.95446 0.88969 0.96229 0.92488 0.88028 0.92929 0.93076 0.88786
0.89841 0.89725
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.88 8.11 37.16 0.30 -2.58 16
2 C 0.12 2.71 0.55 -156.81 -0.09 2.62 16
3 C -0.13 -2.82 8.11 37.16 0.30 -2.52 16
4 C -0.52 -13.09 7.92 -34.44 -0.27 -13.36 16
5 H 0.05 1.22 5.90 -52.48 -0.31 0.91 16
6 C 0.07 1.87 5.15 -17.82 -0.09 1.78 16
7 N -0.88 -22.43 9.35 55.43 0.52 -21.91 16
8 Si 0.89 19.82 29.54 -169.99 -5.02 14.80 16
9 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16
10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16
11 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16
12 C 0.18 3.85 5.57 -82.47 -0.46 3.39 16
13 N -0.47 -10.10 7.12 33.35 0.24 -9.87 16
14 H 0.44 8.81 7.12 -182.35 -1.30 7.51 16
15 N -0.31 -6.53 12.67 33.78 0.43 -6.10 16
16 C 0.08 1.46 7.22 -82.34 -0.59 0.87 16
17 C -0.32 -6.47 5.71 -104.96 -0.60 -7.07 16
18 C 0.15 2.66 5.84 36.10 0.21 2.87 16
19 O -0.39 -6.44 10.71 -35.23 -0.38 -6.82 16
20 C 0.07 0.91 6.75 37.47 0.25 1.17 16
21 C -0.07 -0.96 6.58 -27.41 -0.18 -1.14 16
22 H 0.02 0.44 5.37 -51.93 -0.28 0.16 16
23 H 0.09 2.25 6.07 -51.93 -0.32 1.93 16
24 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16
25 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16
26 H 0.09 2.23 6.07 -51.93 -0.32 1.92 16
27 H 0.02 0.38 6.13 -51.92 -0.32 0.07 16
28 H 0.26 6.54 8.31 -40.82 -0.34 6.20 16
29 H 0.10 1.83 5.64 -51.93 -0.29 1.53 16
30 H 0.05 0.89 7.32 -51.93 -0.38 0.51 16
31 H 0.05 0.66 8.08 -51.93 -0.42 0.24 16
32 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16
33 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16
34 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16
LS Contribution 264.94 15.07 3.99 3.99
Total: -1.00 -27.40 264.94 -6.62 -34.02
By element:
Atomic # 1 Polarization: 11.04 SS G_CDS: -5.18 Total: 5.87 kcal
Atomic # 6 Polarization: -12.77 SS G_CDS: -1.22 Total: -13.98 kcal
Atomic # 7 Polarization: -39.06 SS G_CDS: 1.18 Total: -37.88 kcal
Atomic # 8 Polarization: -6.44 SS G_CDS: -0.38 Total: -6.82 kcal
Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal
Total LS contribution 3.99 Total: 3.99 kcal
Total: -27.40 -6.62 -34.02 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260867276.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 53.048 kcal
(2) G-P(sol) polarization free energy of solvation -27.404 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.644 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.617 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.021 kcal
(6) G-S(sol) free energy of system = (1) + (5) 19.027 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds