Wall clock time and date at job start Mon Mar 30 2020 03:20:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53008 * 109.47475 * 2 1
4 4 C 1.50700 * 109.47299 * 240.00418 * 2 1 3
5 5 H 1.08003 * 120.00055 * 240.00563 * 4 2 1
6 6 C 1.37875 * 119.99926 * 59.99202 * 4 2 1
7 7 N 1.31507 * 120.00305 * 0.02562 * 6 4 2
8 8 Si 1.86806 * 119.99713 * 180.02562 * 6 4 2
9 9 H 1.48505 * 109.47087 * 60.00797 * 8 6 4
10 10 H 1.48506 * 109.47044 * 180.02562 * 8 6 4
11 11 H 1.48497 * 109.47550 * 300.00462 * 8 6 4
12 12 C 1.50701 * 109.47435 * 119.99990 * 2 1 3
13 13 N 1.35304 * 126.20260 * 119.99681 * 12 2 1
14 14 H 0.97006 * 125.99230 * 359.97380 * 13 12 2
15 15 N 1.40415 * 108.01472 * 179.97438 * 13 12 2
16 16 C 1.29747 * 108.08477 * 359.96833 * 15 13 12
17 17 C 1.34256 * 126.20404 * 300.00164 * 12 2 1
18 18 C 1.50893 * 129.41297 * 0.28165 * 17 12 2
19 19 O 1.43458 * 107.71687 * 164.66296 * 18 17 12
20 20 C 1.42915 * 114.63553 * 51.45596 * 19 18 17
21 21 C 1.51027 * 129.49917 * 180.11399 * 16 15 13
22 22 H 1.09002 * 109.46790 * 299.99894 * 1 2 3
23 23 H 1.08994 * 109.47100 * 59.99946 * 1 2 3
24 24 H 1.08997 * 109.47208 * 180.02562 * 1 2 3
25 25 H 1.08995 * 109.47198 * 179.97438 * 3 2 1
26 26 H 1.08997 * 109.46742 * 300.00834 * 3 2 1
27 27 H 1.09009 * 109.46689 * 59.99672 * 3 2 1
28 28 H 0.97002 * 120.00438 * 179.97438 * 7 6 4
29 29 H 1.08993 * 109.81224 * 45.10518 * 18 17 12
30 30 H 1.09002 * 109.80383 * 284.21404 * 18 17 12
31 31 H 1.09002 * 109.39411 * 47.72144 * 20 19 18
32 32 H 1.09004 * 109.39364 * 167.44152 * 20 19 18
33 33 H 1.09002 * 109.85136 * 44.65364 * 21 16 15
34 34 H 1.08999 * 109.84722 * 283.66823 * 21 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0323 -0.7103 -1.2305
5 1 2.6532 -1.5885 -1.1315
6 6 1.6991 -0.2393 -2.4827
7 7 0.9434 0.8302 -2.6034
8 14 2.3213 -1.1202 -4.0080
9 1 1.8258 -2.5201 -4.0078
10 1 1.8268 -0.4198 -5.2205
11 1 3.8063 -1.1208 -4.0083
12 6 2.0324 -0.7104 1.2304
13 7 2.8134 -1.8150 1.2526
14 1 3.1496 -2.2911 0.4771
15 7 3.0521 -2.1513 2.5948
16 6 2.4406 -1.2846 3.3420
17 6 1.7861 -0.3620 2.5034
18 6 0.9674 0.7857 3.0413
19 8 0.7110 0.5266 4.4288
20 6 1.8727 0.2176 5.2017
21 6 2.3774 -1.1894 4.8480
22 1 -0.3633 0.5138 0.8900
23 1 -0.3633 0.5138 -0.8899
24 1 -0.3633 -1.0276 0.0005
25 1 3.1300 1.4425 0.0005
26 1 1.6766 1.9564 -0.8899
27 1 1.6767 1.9564 0.8900
28 1 0.7092 1.1618 -3.4844
29 1 0.0250 0.8539 2.4979
30 1 1.5236 1.7173 2.9361
31 1 2.6540 0.9471 4.9882
32 1 1.6229 0.2566 6.2620
33 1 3.3704 -1.3432 5.2705
34 1 1.6885 -1.9388 5.2376
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260867276.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:20:44
Heat of formation + Delta-G solvation = 2.009231 kcal
Electronic energy + Delta-G solvation = -17418.019338 eV
Core-core repulsion = 14737.508163 eV
Total energy + Delta-G solvation = -2680.511174 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-42.49577 -38.95671 -37.45880 -33.96044 -33.17563 -31.61983 -30.09324 -27.63378
-27.22211 -26.56461 -24.37550 -22.75038 -20.85348 -19.74487 -18.66609 -17.79688
-16.82719 -16.55876 -16.40657 -15.91321 -15.43534 -15.05496 -14.59133 -14.40447
-13.91418 -13.66661 -13.29744 -13.09158 -12.97930 -12.85740 -12.69314 -12.37691
-12.13927 -11.83368 -11.76231 -11.59390 -11.43856 -10.79392 -10.58294 -10.47095
-10.12222 -9.17124 -8.09294 -6.27689 1.12179 1.41124 1.43564 1.48596
1.82561 2.03907 2.39242 2.99029 3.15806 3.64441 3.91321 4.15521
4.38629 4.47067 4.50364 4.55419 4.70518 4.75701 4.82958 4.88675
5.03496 5.07213 5.10269 5.14988 5.29389 5.38112 5.57664 5.57911
5.79589 6.00817 6.07260 6.27725 6.31180 6.49672 6.73484 6.89996
7.41197 8.89995
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.041200 B = 0.007854 C = 0.006951
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 679.442071 B = 3564.428958 C = 4027.387856
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.118 4.118
2 C 0.114 3.886
3 C -0.115 4.115
4 C -0.542 4.542
5 H 0.050 0.950
6 C 0.036 3.964
7 N -0.894 5.894
8 Si 0.946 3.054
9 H -0.277 1.277
10 H -0.282 1.282
11 H -0.276 1.276
12 C 0.152 3.848
13 N -0.484 5.484
14 H 0.438 0.562
15 N -0.329 5.329
16 C 0.071 3.929
17 C -0.323 4.323
18 C 0.152 3.848
19 O -0.395 6.395
20 C 0.063 3.937
21 C -0.065 4.065
22 H 0.042 0.958
23 H 0.073 0.927
24 H 0.015 0.985
25 H 0.017 0.983
26 H 0.073 0.927
27 H 0.040 0.960
28 H 0.264 0.736
29 H 0.097 0.903
30 H 0.062 0.938
31 H 0.057 0.943
32 H 0.134 0.866
33 H 0.107 0.893
34 H 0.097 0.903
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.172 0.517 10.846 10.922
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.176 4.176
2 C 0.112 3.888
3 C -0.173 4.173
4 C -0.580 4.580
5 H 0.068 0.932
6 C -0.166 4.166
7 N -0.532 5.532
8 Si 0.772 3.228
9 H -0.202 1.202
10 H -0.208 1.208
11 H -0.202 1.202
12 C 0.023 3.977
13 N -0.192 5.192
14 H 0.285 0.715
15 N -0.150 5.150
16 C -0.098 4.098
17 C -0.334 4.334
18 C 0.075 3.925
19 O -0.313 6.313
20 C -0.014 4.014
21 C -0.105 4.105
22 H 0.060 0.940
23 H 0.092 0.908
24 H 0.035 0.965
25 H 0.036 0.964
26 H 0.091 0.909
27 H 0.059 0.941
28 H 0.074 0.926
29 H 0.115 0.885
30 H 0.080 0.920
31 H 0.075 0.925
32 H 0.152 0.848
33 H 0.126 0.874
34 H 0.115 0.885
Dipole moment (debyes) X Y Z Total
from point charges 1.651 -0.410 10.772 10.905
hybrid contribution 0.387 -0.289 -1.946 2.005
sum 2.038 -0.699 8.826 9.085
Atomic orbital electron populations
1.21697 0.95934 0.98816 1.01142 1.17008 0.93072 0.92177 0.86499
1.21654 0.97838 0.96711 1.01142 1.21161 1.32788 1.12588 0.91453
0.93219 1.25412 0.94790 0.95420 1.00930 1.69867 1.36219 1.22934
1.24134 0.85810 0.78607 0.78777 0.79586 1.20245 1.20752 1.20166
1.21339 0.91127 0.87990 0.97223 1.46586 1.42409 1.23992 1.06251
0.71546 1.76642 1.26162 1.24696 0.87497 1.22726 0.95700 0.93030
0.98387 1.20562 1.14117 1.06683 0.92053 1.21020 0.98329 0.92503
0.80689 1.87910 1.33282 1.90286 1.19873 1.22823 0.88132 0.93402
0.97017 1.20954 1.04065 1.00365 0.85081 0.93965 0.90793 0.96547
0.96392 0.90868 0.94131 0.92586 0.88519 0.91974 0.92459 0.84814
0.87430 0.88522
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -5.36 8.11 71.98 0.58 -4.78 16
2 C 0.11 5.30 0.55 -53.67 -0.03 5.27 16
3 C -0.12 -5.18 8.11 71.98 0.58 -4.59 16
4 C -0.54 -27.28 7.92 25.60 0.20 -27.08 16
5 H 0.05 2.44 5.90 -2.91 -0.02 2.42 16
6 C 0.04 1.80 5.15 84.66 0.44 2.24 16
7 N -0.89 -46.11 9.35 21.45 0.20 -45.91 16
8 Si 0.95 40.84 29.54 68.60 2.03 42.86 16
9 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16
10 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16
11 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16
12 C 0.15 6.61 5.57 41.11 0.23 6.84 16
13 N -0.48 -20.61 7.12 -48.40 -0.34 -20.95 16
14 H 0.44 17.87 7.12 -213.11 -1.52 16.35 16
15 N -0.33 -13.30 12.67 -47.04 -0.60 -13.90 16
16 C 0.07 2.59 7.22 43.60 0.31 2.91 16
17 C -0.32 -12.64 5.71 -20.08 -0.11 -12.76 16
18 C 0.15 5.12 5.84 71.30 0.42 5.53 16
19 O -0.39 -11.98 10.71 -148.98 -1.60 -13.57 16
20 C 0.06 1.44 6.75 72.19 0.49 1.92 16
21 C -0.07 -1.67 6.58 30.16 0.20 -1.47 16
22 H 0.04 1.69 5.37 -2.39 -0.01 1.68 16
23 H 0.07 3.63 6.07 -2.39 -0.01 3.62 16
24 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16
25 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16
26 H 0.07 3.57 6.07 -2.39 -0.01 3.55 16
27 H 0.04 1.59 6.13 -2.38 -0.01 1.58 16
28 H 0.26 13.14 8.31 -92.71 -0.77 12.37 16
29 H 0.10 3.32 5.64 -2.39 -0.01 3.31 16
30 H 0.06 1.97 7.32 -2.39 -0.02 1.95 16
31 H 0.06 1.26 8.08 -2.39 -0.02 1.24 16
32 H 0.13 2.02 8.14 -2.38 -0.02 2.01 16
33 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16
34 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16
Total: -1.00 -57.61 264.94 2.61 -55.00
By element:
Atomic # 1 Polarization: 22.81 SS G_CDS: -0.39 Total: 22.42 kcal
Atomic # 6 Polarization: -29.26 SS G_CDS: 3.31 Total: -25.95 kcal
Atomic # 7 Polarization: -80.02 SS G_CDS: -0.74 Total: -80.76 kcal
Atomic # 8 Polarization: -11.98 SS G_CDS: -1.60 Total: -13.57 kcal
Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.86 kcal
Total: -57.61 2.61 -55.00 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260867276.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 57.014 kcal
(2) G-P(sol) polarization free energy of solvation -57.615 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.601 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.610 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.004 kcal
(6) G-S(sol) free energy of system = (1) + (5) 2.009 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds