Wall clock time and date at job start Mon Mar 30 2020 03:12:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53009 * 1
3 3 C 1.53000 * 109.46822 * 2 1
4 4 C 1.53001 * 109.46900 * 240.00496 * 2 1 3
5 5 C 1.50691 * 109.47244 * 120.00371 * 2 1 3
6 6 C 1.38234 * 120.82338 * 359.97438 * 5 2 1
7 7 N 1.32496 * 119.17468 * 179.72159 * 6 5 2
8 8 C 1.31783 * 120.96309 * 0.28423 * 7 6 5
9 9 C 1.50709 * 119.09153 * 179.97438 * 8 7 6
10 10 C 1.50697 * 109.47209 * 89.99986 * 9 8 7
11 11 H 1.08007 * 119.99729 * 359.97438 * 10 9 8
12 12 C 1.37868 * 120.00102 * 180.02562 * 10 9 8
13 13 N 1.31522 * 120.00112 * 359.97438 * 12 10 9
14 14 Si 1.86803 * 120.00405 * 179.97438 * 12 10 9
15 15 H 1.48500 * 109.47071 * 59.99572 * 14 12 10
16 16 H 1.48492 * 109.47585 * 180.02562 * 14 12 10
17 17 H 1.48502 * 109.46753 * 300.00204 * 14 12 10
18 18 N 1.31763 * 121.81844 * 359.97438 * 8 7 6
19 19 C 1.32828 * 120.71707 * 359.97438 * 18 8 7
20 20 O 1.35510 * 120.51468 * 180.02562 * 19 18 8
21 21 H 1.08997 * 109.46863 * 299.99619 * 1 2 3
22 22 H 1.08999 * 109.47054 * 60.00294 * 1 2 3
23 23 H 1.08997 * 109.47032 * 179.97438 * 1 2 3
24 24 H 1.09001 * 109.47068 * 180.02562 * 3 2 1
25 25 H 1.08999 * 109.47523 * 299.99974 * 3 2 1
26 26 H 1.08997 * 109.47091 * 60.00520 * 3 2 1
27 27 H 1.09002 * 109.46953 * 299.99652 * 4 2 1
28 28 H 1.08999 * 109.47458 * 60.00017 * 4 2 1
29 29 H 1.09000 * 109.47046 * 180.02562 * 4 2 1
30 30 H 1.08002 * 120.41543 * 0.02562 * 6 5 2
31 31 H 1.09003 * 109.46829 * 210.00017 * 9 8 7
32 32 H 1.08997 * 109.46875 * 329.99457 * 9 8 7
33 33 H 0.96998 * 119.99879 * 180.02562 * 13 12 10
34 34 H 0.96697 * 114.00305 * 89.99687 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7212 -1.2493
5 6 2.0324 -0.7104 1.2303
6 6 1.1494 -1.2418 2.1516
7 7 1.6268 -1.8647 3.2191
8 6 2.9252 -1.9778 3.4139
9 6 3.4221 -2.6944 4.6431
10 6 3.5882 -4.1606 4.3371
11 1 3.3568 -4.5360 3.3512
12 6 4.0347 -5.0228 5.3158
13 7 4.3161 -4.5657 6.5165
14 14 4.2400 -6.8404 4.9368
15 1 5.2218 -7.0085 3.8354
16 1 4.7285 -7.5467 6.1482
17 1 2.9322 -7.4110 4.5253
18 7 3.8011 -1.4816 2.5638
19 6 3.3990 -0.8444 1.4699
20 8 4.3033 -0.3361 0.5980
21 1 -0.3633 0.5138 0.8900
22 1 -0.3633 0.5138 -0.8900
23 1 -0.3633 -1.0276 -0.0005
24 1 3.1300 1.4426 -0.0005
25 1 1.6767 1.9564 -0.8900
26 1 1.6767 1.9563 0.8900
27 1 1.6767 -1.7488 -1.2493
28 1 1.6767 -0.2073 -2.1393
29 1 3.1300 -0.7216 -1.2491
30 1 0.0835 -1.1546 2.0006
31 1 4.3819 -2.2751 4.9450
32 1 2.7015 -2.5713 5.4516
33 1 4.6305 -5.1723 7.2050
34 1 4.5661 -0.9519 -0.0997
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260912359.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:12:57
Heat of formation + Delta-G solvation = -11.255740 kcal
Electronic energy + Delta-G solvation = -16718.362630 eV
Core-core repulsion = 14037.276243 eV
Total energy + Delta-G solvation = -2681.086387 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-40.92648 -37.67711 -36.68539 -33.32137 -32.45096 -30.83105 -27.92128 -27.58920
-27.30599 -24.19110 -23.44336 -21.73328 -19.51270 -18.35265 -17.28627 -16.40206
-15.98657 -15.25393 -14.63965 -14.36878 -14.18767 -13.50809 -13.28942 -12.78618
-12.34494 -12.18110 -12.11959 -12.00733 -11.78098 -11.69514 -11.35810 -11.07414
-10.83251 -10.78934 -10.64649 -10.19062 -10.02631 -9.57370 -9.52505 -8.62140
-8.46689 -8.43442 -6.06621 -4.09465 1.38648 1.56976 3.32959 3.36340
3.39302 3.73557 4.28973 4.46889 4.56561 4.75446 4.79651 4.93919
5.00960 5.27007 5.30591 5.37221 5.51606 5.59315 5.69078 5.79705
5.81105 5.90168 5.94263 6.06760 6.19362 6.24880 6.38347 6.87296
7.43284 7.47602 7.59853 7.66553 7.86576 8.20529 8.87649 8.89475
9.52161 11.04411
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.039496 B = 0.005905 C = 0.005861
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 708.757718 B = 4740.488368 C = 4776.469016
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.008 4.008
3 C -0.141 4.141
4 C -0.141 4.141
5 C -0.229 4.229
6 C 0.153 3.847
7 N -0.520 5.520
8 C 0.379 3.621
9 C 0.078 3.922
10 C -0.506 4.506
11 H 0.053 0.947
12 C 0.062 3.938
13 N -0.892 5.892
14 Si 0.901 3.099
15 H -0.276 1.276
16 H -0.285 1.285
17 H -0.276 1.276
18 N -0.534 5.534
19 C 0.357 3.643
20 O -0.477 6.477
21 H 0.059 0.941
22 H 0.059 0.941
23 H 0.059 0.941
24 H 0.071 0.929
25 H 0.054 0.946
26 H 0.051 0.949
27 H 0.055 0.945
28 H 0.059 0.941
29 H 0.056 0.944
30 H 0.163 0.837
31 H 0.049 0.951
32 H 0.051 0.949
33 H 0.265 0.735
34 H 0.397 0.603
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.940 8.842 -14.463 17.962
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.009 4.009
3 C -0.198 4.198
4 C -0.198 4.198
5 C -0.235 4.235
6 C -0.013 4.013
7 N -0.235 5.235
8 C 0.115 3.885
9 C 0.040 3.960
10 C -0.545 4.545
11 H 0.071 0.929
12 C -0.140 4.140
13 N -0.530 5.530
14 Si 0.729 3.271
15 H -0.202 1.202
16 H -0.210 1.210
17 H -0.201 1.201
18 N -0.257 5.257
19 C 0.168 3.832
20 O -0.285 6.285
21 H 0.078 0.922
22 H 0.078 0.922
23 H 0.078 0.922
24 H 0.090 0.910
25 H 0.073 0.927
26 H 0.070 0.930
27 H 0.074 0.926
28 H 0.078 0.922
29 H 0.075 0.925
30 H 0.180 0.820
31 H 0.067 0.933
32 H 0.069 0.931
33 H 0.074 0.926
34 H 0.255 0.745
Dipole moment (debyes) X Y Z Total
from point charges -5.553 8.842 -13.168 16.805
hybrid contribution -0.042 -0.922 -1.278 1.577
sum -5.595 7.920 -14.447 17.400
Atomic orbital electron populations
1.21971 0.94224 1.02078 1.02067 1.19174 0.95294 0.94975 0.91466
1.21936 1.02587 0.94122 1.01155 1.21902 1.01249 1.00239 0.96415
1.21499 0.94159 1.06989 1.00806 1.23198 1.00374 0.89786 0.87973
1.68500 1.17218 1.16813 1.20964 1.24286 0.83286 0.86459 0.94447
1.18291 0.97545 0.93957 0.86236 1.20715 1.45300 0.90865 0.97656
0.92888 1.24925 0.95145 0.99076 0.94858 1.69934 1.44781 1.35532
1.02758 0.86508 0.78551 0.84380 0.77707 1.20196 1.21036 1.20145
1.68039 1.41960 1.11448 1.04270 1.19364 0.85872 0.89378 0.88612
1.84693 1.61716 1.40939 1.41185 0.92164 0.92182 0.92178 0.90965
0.92731 0.93003 0.92637 0.92158 0.92469 0.82016 0.93294 0.93101
0.92575 0.74454
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.39 7.16 37.16 0.27 -1.12 16
2 C -0.01 -0.09 0.75 -155.66 -0.12 -0.20 16
3 C -0.14 -1.54 8.27 37.16 0.31 -1.24 16
4 C -0.14 -1.38 8.27 37.16 0.31 -1.07 16
5 C -0.23 -3.55 4.77 -104.20 -0.50 -4.04 16
6 C 0.15 2.60 10.24 -17.27 -0.18 2.42 16
7 N -0.52 -11.32 10.33 -10.79 -0.11 -11.43 16
8 C 0.38 9.07 6.83 -157.23 -1.07 8.00 16
9 C 0.08 2.12 5.41 -29.03 -0.16 1.97 16
10 C -0.51 -14.59 9.09 -34.44 -0.31 -14.90 16
11 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16
12 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16
13 N -0.89 -26.45 13.29 55.43 0.74 -25.71 16
14 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16
15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16
16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16
17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16
18 N -0.53 -11.98 10.36 -10.78 -0.11 -12.10 16
19 C 0.36 6.39 7.45 -16.70 -0.12 6.27 16
20 O -0.48 -6.94 10.31 -18.22 -0.19 -7.13 16
21 H 0.06 0.57 7.56 -51.93 -0.39 0.17 16
22 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16
23 H 0.06 0.56 7.56 -51.93 -0.39 0.17 16
24 H 0.07 0.87 6.24 -51.93 -0.32 0.55 16
25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16
26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16
27 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16
28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16
29 H 0.06 0.53 5.50 -51.93 -0.29 0.24 16
30 H 0.16 2.17 6.06 -52.49 -0.32 1.85 16
31 H 0.05 1.39 8.14 -51.93 -0.42 0.97 16
32 H 0.05 1.43 8.14 -51.93 -0.42 1.01 16
33 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16
34 H 0.40 4.05 7.69 45.56 0.35 4.40 16
LS Contribution 282.50 15.07 4.26 4.26
Total: -1.00 -32.30 282.50 -5.98 -38.28
By element:
Atomic # 1 Polarization: 3.19 SS G_CDS: -3.86 Total: -0.68 kcal
Atomic # 6 Polarization: -0.57 SS G_CDS: -1.68 Total: -2.25 kcal
Atomic # 7 Polarization: -49.75 SS G_CDS: 0.51 Total: -49.24 kcal
Atomic # 8 Polarization: -6.94 SS G_CDS: -0.19 Total: -7.13 kcal
Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal
Total LS contribution 4.26 Total: 4.26 kcal
Total: -32.30 -5.98 -38.28 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260912359.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 27.021 kcal
(2) G-P(sol) polarization free energy of solvation -32.298 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.278 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.978 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.276 kcal
(6) G-S(sol) free energy of system = (1) + (5) -11.256 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds