Wall clock time and date at job start Mon Mar 30 2020 03:12:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53009 * 1
3 3 C 1.53000 * 109.46822 * 2 1
4 4 C 1.53001 * 109.46900 * 240.00496 * 2 1 3
5 5 C 1.50691 * 109.47244 * 120.00371 * 2 1 3
6 6 C 1.38234 * 120.82338 * 359.97438 * 5 2 1
7 7 N 1.32496 * 119.17468 * 179.72159 * 6 5 2
8 8 C 1.31783 * 120.96309 * 0.28423 * 7 6 5
9 9 C 1.50709 * 119.09153 * 179.97438 * 8 7 6
10 10 C 1.50697 * 109.47209 * 89.99986 * 9 8 7
11 11 H 1.08007 * 119.99729 * 359.97438 * 10 9 8
12 12 C 1.37868 * 120.00102 * 180.02562 * 10 9 8
13 13 N 1.31522 * 120.00112 * 359.97438 * 12 10 9
14 14 Si 1.86803 * 120.00405 * 179.97438 * 12 10 9
15 15 H 1.48500 * 109.47071 * 59.99572 * 14 12 10
16 16 H 1.48492 * 109.47585 * 180.02562 * 14 12 10
17 17 H 1.48502 * 109.46753 * 300.00204 * 14 12 10
18 18 N 1.31763 * 121.81844 * 359.97438 * 8 7 6
19 19 C 1.32828 * 120.71707 * 359.97438 * 18 8 7
20 20 O 1.35510 * 120.51468 * 180.02562 * 19 18 8
21 21 H 1.08997 * 109.46863 * 299.99619 * 1 2 3
22 22 H 1.08999 * 109.47054 * 60.00294 * 1 2 3
23 23 H 1.08997 * 109.47032 * 179.97438 * 1 2 3
24 24 H 1.09001 * 109.47068 * 180.02562 * 3 2 1
25 25 H 1.08999 * 109.47523 * 299.99974 * 3 2 1
26 26 H 1.08997 * 109.47091 * 60.00520 * 3 2 1
27 27 H 1.09002 * 109.46953 * 299.99652 * 4 2 1
28 28 H 1.08999 * 109.47458 * 60.00017 * 4 2 1
29 29 H 1.09000 * 109.47046 * 180.02562 * 4 2 1
30 30 H 1.08002 * 120.41543 * 0.02562 * 6 5 2
31 31 H 1.09003 * 109.46829 * 210.00017 * 9 8 7
32 32 H 1.08997 * 109.46875 * 329.99457 * 9 8 7
33 33 H 0.96998 * 119.99879 * 180.02562 * 13 12 10
34 34 H 0.96697 * 114.00305 * 89.99687 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7212 -1.2493
5 6 2.0324 -0.7104 1.2303
6 6 1.1494 -1.2418 2.1516
7 7 1.6268 -1.8647 3.2191
8 6 2.9252 -1.9778 3.4139
9 6 3.4221 -2.6944 4.6431
10 6 3.5882 -4.1606 4.3371
11 1 3.3568 -4.5360 3.3512
12 6 4.0347 -5.0228 5.3158
13 7 4.3161 -4.5657 6.5165
14 14 4.2400 -6.8404 4.9368
15 1 5.2218 -7.0085 3.8354
16 1 4.7285 -7.5467 6.1482
17 1 2.9322 -7.4110 4.5253
18 7 3.8011 -1.4816 2.5638
19 6 3.3990 -0.8444 1.4699
20 8 4.3033 -0.3361 0.5980
21 1 -0.3633 0.5138 0.8900
22 1 -0.3633 0.5138 -0.8900
23 1 -0.3633 -1.0276 -0.0005
24 1 3.1300 1.4426 -0.0005
25 1 1.6767 1.9564 -0.8900
26 1 1.6767 1.9563 0.8900
27 1 1.6767 -1.7488 -1.2493
28 1 1.6767 -0.2073 -2.1393
29 1 3.1300 -0.7216 -1.2491
30 1 0.0835 -1.1546 2.0006
31 1 4.3819 -2.2751 4.9450
32 1 2.7015 -2.5713 5.4516
33 1 4.6305 -5.1723 7.2050
34 1 4.5661 -0.9519 -0.0997
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260912359.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:12:56
Heat of formation + Delta-G solvation = -35.481801 kcal
Electronic energy + Delta-G solvation = -16719.413151 eV
Core-core repulsion = 14037.276243 eV
Total energy + Delta-G solvation = -2682.136907 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-42.36690 -38.99029 -37.76595 -35.39184 -34.01470 -32.55057 -29.67405 -28.42166
-28.11008 -26.09955 -24.83994 -23.44615 -20.55241 -19.75280 -18.79355 -18.57852
-17.28670 -16.59363 -16.38984 -15.55734 -15.26008 -14.80559 -14.63449 -14.39028
-13.99790 -13.58831 -13.32990 -13.07300 -12.99351 -12.89037 -12.63578 -12.60056
-12.50105 -12.04669 -11.94334 -11.70006 -11.66967 -11.51862 -11.04182 -10.63990
-10.16991 -9.94489 -8.25143 -6.37642 -0.09073 0.11770 1.39107 1.43077
1.51289 2.32630 2.43709 2.80284 3.07259 3.22451 3.52539 3.58944
3.81202 4.10238 4.20032 4.34271 4.58539 4.63991 4.81401 4.83833
4.92511 5.05252 5.06863 5.13900 5.16043 5.28202 5.32925 5.39148
5.44601 5.54961 5.63572 6.01689 6.12302 6.48179 6.67237 7.26811
7.28866 8.86455
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.039496 B = 0.005905 C = 0.005861
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 708.757718 B = 4740.488368 C = 4776.469016
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.008 4.008
3 C -0.138 4.138
4 C -0.141 4.141
5 C -0.202 4.202
6 C 0.147 3.853
7 N -0.545 5.545
8 C 0.355 3.645
9 C 0.088 3.912
10 C -0.526 4.526
11 H 0.047 0.953
12 C 0.010 3.990
13 N -0.925 5.925
14 Si 0.973 3.027
15 H -0.269 1.269
16 H -0.274 1.274
17 H -0.267 1.267
18 N -0.568 5.568
19 C 0.350 3.650
20 O -0.471 6.471
21 H 0.060 0.940
22 H 0.083 0.917
23 H 0.062 0.938
24 H 0.059 0.941
25 H 0.082 0.918
26 H 0.041 0.959
27 H 0.050 0.950
28 H 0.085 0.915
29 H 0.059 0.941
30 H 0.201 0.799
31 H 0.019 0.981
32 H 0.026 0.974
33 H 0.269 0.731
34 H 0.416 0.584
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.089 8.957 -17.275 20.710
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.009 4.009
3 C -0.196 4.196
4 C -0.198 4.198
5 C -0.207 4.207
6 C -0.018 4.018
7 N -0.260 5.260
8 C 0.089 3.911
9 C 0.049 3.951
10 C -0.565 4.565
11 H 0.065 0.935
12 C -0.189 4.189
13 N -0.564 5.564
14 Si 0.796 3.204
15 H -0.194 1.194
16 H -0.199 1.199
17 H -0.192 1.192
18 N -0.293 5.293
19 C 0.163 3.837
20 O -0.282 6.282
21 H 0.079 0.921
22 H 0.102 0.898
23 H 0.081 0.919
24 H 0.078 0.922
25 H 0.101 0.899
26 H 0.061 0.939
27 H 0.069 0.931
28 H 0.104 0.896
29 H 0.078 0.922
30 H 0.218 0.782
31 H 0.038 0.962
32 H 0.044 0.956
33 H 0.078 0.922
34 H 0.279 0.721
Dipole moment (debyes) X Y Z Total
from point charges -6.705 8.976 -16.025 19.553
hybrid contribution 0.298 -0.809 -0.534 1.014
sum -6.407 8.167 -16.559 19.543
Atomic orbital electron populations
1.22002 0.92316 1.02728 1.03387 1.19371 0.96851 0.94829 0.89868
1.21917 1.01778 0.93758 1.02099 1.21924 1.01505 1.00060 0.96314
1.21982 0.92805 1.04484 1.01467 1.23856 1.02357 0.88798 0.86757
1.68365 1.16157 1.18232 1.23291 1.23393 0.84457 0.88745 0.94514
1.17881 0.95453 0.94055 0.87674 1.20961 1.45857 0.92091 0.97590
0.93486 1.25884 0.94365 1.04165 0.94487 1.70057 1.45189 1.37430
1.03741 0.85393 0.78894 0.78120 0.77971 1.19401 1.19896 1.19210
1.67842 1.42678 1.12926 1.05877 1.19603 0.87443 0.88693 0.87988
1.84678 1.61234 1.41144 1.41122 0.92103 0.89764 0.91874 0.92236
0.89947 0.93949 0.93074 0.89631 0.92237 0.78207 0.96236 0.95585
0.92166 0.72145
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.18 7.16 71.99 0.52 -1.67 16
2 C -0.01 -0.15 0.75 -52.93 -0.04 -0.19 16
3 C -0.14 -2.57 8.27 71.98 0.60 -1.98 16
4 C -0.14 -2.21 8.27 71.98 0.60 -1.61 16
5 C -0.20 -5.91 4.77 -19.59 -0.09 -6.00 16
6 C 0.15 4.80 10.24 84.59 0.87 5.67 16
7 N -0.55 -24.16 10.33 -188.04 -1.94 -26.10 16
8 C 0.35 17.69 6.83 138.77 0.95 18.63 16
9 C 0.09 5.09 5.41 29.10 0.16 5.25 16
10 C -0.53 -31.51 9.09 25.60 0.23 -31.28 16
11 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16
12 C 0.01 0.59 5.46 84.65 0.46 1.05 16
13 N -0.93 -56.55 13.29 21.45 0.28 -56.26 16
14 Si 0.97 45.06 29.54 68.60 2.03 47.09 16
15 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16
16 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16
17 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16
18 N -0.57 -26.25 10.36 -300.69 -3.12 -29.37 16
19 C 0.35 12.34 7.45 84.82 0.63 12.97 16
20 O -0.47 -13.00 10.31 -88.12 -0.91 -13.91 16
21 H 0.06 0.91 7.56 -2.39 -0.02 0.89 16
22 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16
23 H 0.06 0.92 7.56 -2.39 -0.02 0.90 16
24 H 0.06 1.27 6.24 -2.39 -0.01 1.26 16
25 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16
26 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16
27 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16
28 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16
29 H 0.06 0.89 5.50 -2.39 -0.01 0.88 16
30 H 0.20 4.82 6.06 -2.91 -0.02 4.80 16
31 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16
32 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16
33 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16
34 H 0.42 7.66 7.69 -74.06 -0.57 7.09 16
Total: -1.00 -72.98 282.50 1.76 -71.22
By element:
Atomic # 1 Polarization: 5.95 SS G_CDS: 0.54 Total: 6.49 kcal
Atomic # 6 Polarization: -4.03 SS G_CDS: 4.87 Total: 0.84 kcal
Atomic # 7 Polarization: -106.96 SS G_CDS: -4.77 Total: -111.73 kcal
Atomic # 8 Polarization: -13.00 SS G_CDS: -0.91 Total: -13.91 kcal
Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal
Total: -72.98 1.76 -71.22 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260912359.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 35.739 kcal
(2) G-P(sol) polarization free energy of solvation -72.977 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.237 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.755 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.221 kcal
(6) G-S(sol) free energy of system = (1) + (5) -35.482 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds