Wall clock time and date at job start Mon Mar 30 2020 03:07:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.50701 * 109.46852 * 2 1
4 4 N 1.35502 * 125.88921 * 274.68901 * 3 2 1
5 5 H 0.96994 * 125.01479 * 0.23046 * 4 3 2
6 6 N 1.39758 * 109.96319 * 180.26862 * 4 3 2
7 7 C 1.46496 * 125.56187 * 180.02562 * 6 4 3
8 8 C 1.53781 * 113.61677 * 37.51357 * 7 6 4
9 9 C 1.53780 * 87.08257 * 220.02210 * 8 7 6
10 10 C 1.53779 * 87.08027 * 25.43175 * 9 8 7
11 11 C 1.34873 * 108.87209 * 359.97438 * 6 4 3
12 12 O 1.21628 * 126.68354 * 180.02562 * 11 6 4
13 13 C 1.39163 * 125.88523 * 95.00535 * 3 2 1
14 14 C 1.40964 * 126.84641 * 359.72495 * 13 3 2
15 15 H 1.08004 * 119.99900 * 333.69905 * 14 13 3
16 16 C 1.39758 * 119.99921 * 153.68873 * 14 13 3
17 17 N 1.31062 * 120.00098 * 341.56279 * 16 14 13
18 18 Si 1.86805 * 119.99867 * 161.56638 * 16 14 13
19 19 H 1.48497 * 109.47006 * 0.02562 * 18 16 14
20 20 H 1.48505 * 109.47219 * 119.99994 * 18 16 14
21 21 H 1.48501 * 109.46982 * 239.99975 * 18 16 14
22 22 H 1.08998 * 109.46926 * 179.97438 * 1 2 3
23 23 H 1.08996 * 109.46888 * 299.99891 * 1 2 3
24 24 H 1.08999 * 109.46715 * 60.00224 * 1 2 3
25 25 H 1.08996 * 109.46888 * 240.00109 * 2 1 3
26 26 H 1.08996 * 109.46667 * 120.00306 * 2 1 3
27 27 H 1.09000 * 112.85129 * 168.82529 * 7 6 4
28 28 H 1.08996 * 113.61459 * 334.57055 * 8 7 6
29 29 H 1.09001 * 113.61054 * 105.47641 * 8 7 6
30 30 H 1.08996 * 113.61557 * 270.88619 * 9 8 7
31 31 H 1.08998 * 113.69160 * 139.99373 * 9 8 7
32 32 H 1.09004 * 113.61811 * 220.01740 * 10 9 8
33 33 H 1.09007 * 113.68769 * 89.12712 * 10 9 8
34 34 H 0.97002 * 120.00113 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 7 2.2125 2.1997 -1.0941
5 1 2.0331 1.9265 -2.0073
6 7 2.6957 3.4543 -0.7124
7 6 3.0087 4.5594 -1.6217
8 6 2.0310 4.6816 -2.8023
9 6 3.2531 5.0007 -3.6794
10 6 4.0930 4.2171 -2.6570
11 6 2.8258 3.4818 0.6298
12 8 3.2198 4.4153 1.3026
13 6 2.3969 2.1571 1.1232
14 6 2.3631 1.7253 2.4646
15 1 1.6718 0.9521 2.7657
16 6 3.2244 2.2975 3.4048
17 7 4.2881 2.9514 3.0066
18 14 2.8595 2.1301 5.2293
19 1 1.6090 1.3509 5.4145
20 1 3.9842 1.4263 5.8965
21 1 2.6957 3.4795 5.8271
22 1 -0.3633 -1.0277 -0.0005
23 1 -0.3633 0.5138 0.8900
24 1 -0.3633 0.5138 -0.8900
25 1 1.8933 -0.5138 -0.8900
26 1 1.8933 -0.5139 0.8899
27 1 3.1848 5.5000 -1.0998
28 1 1.5404 3.7435 -3.0618
29 1 1.3330 5.5133 -2.7069
30 1 3.4953 6.0626 -3.7211
31 1 3.2187 4.5355 -4.6645
32 1 5.0596 4.6737 -2.4442
33 1 4.1670 3.1517 -2.8757
34 1 4.8861 3.3483 3.6592
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000261002258.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:07:04
Heat of formation + Delta-G solvation = 52.003869 kcal
Electronic energy + Delta-G solvation = -17147.910399 eV
Core-core repulsion = 14469.567155 eV
Total energy + Delta-G solvation = -2678.343244 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-39.86108 -37.73734 -35.46478 -33.37768 -32.44819 -29.43042 -28.66635 -25.52709
-25.25789 -24.35352 -22.33474 -19.59412 -19.52399 -18.50005 -17.15503 -16.23825
-15.12798 -14.71729 -14.23892 -14.15909 -13.81239 -13.46839 -12.75467 -12.53131
-12.40220 -12.35604 -12.04182 -11.61283 -11.22827 -11.06255 -10.94188 -10.62919
-10.55752 -10.39421 -10.29084 -10.26481 -10.16801 -9.83920 -8.78089 -7.99280
-7.54941 -6.47694 -6.13397 -3.64458 3.11792 3.12021 3.34148 3.38597
3.47509 4.31490 4.63065 4.67787 4.83611 4.94691 5.17476 5.38002
5.66740 5.71144 5.80229 5.83306 5.85670 5.91305 5.96321 6.12426
6.21198 6.24260 6.42423 6.45790 6.59495 6.81544 6.97136 7.20213
7.60071 7.62726 7.77534 8.57697 8.93739 9.06780 9.29839 9.41796
10.02700 10.74769
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.025205 B = 0.009093 C = 0.007099
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1110.627242 B = 3078.587259 C = 3942.993307
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.018 4.018
3 C -0.071 4.071
4 N -0.526 5.526
5 H 0.408 0.592
6 N -0.418 5.418
7 C 0.147 3.853
8 C -0.151 4.151
9 C -0.139 4.139
10 C -0.155 4.155
11 C 0.527 3.473
12 O -0.531 6.531
13 C -0.036 4.036
14 C -0.445 4.445
15 H 0.075 0.925
16 C 0.075 3.925
17 N -0.774 5.774
18 Si 0.896 3.104
19 H -0.265 1.265
20 H -0.281 1.281
21 H -0.278 1.278
22 H 0.041 0.959
23 H 0.057 0.943
24 H 0.041 0.959
25 H 0.044 0.956
26 H 0.078 0.922
27 H 0.120 0.880
28 H 0.081 0.919
29 H 0.070 0.930
30 H 0.081 0.919
31 H 0.069 0.931
32 H 0.070 0.930
33 H 0.083 0.917
34 H 0.270 0.730
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.282 -0.811 -10.445 10.979
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.057 4.057
3 C -0.176 4.176
4 N -0.258 5.258
5 H 0.247 0.753
6 N -0.241 5.241
7 C 0.043 3.957
8 C -0.189 4.189
9 C -0.177 4.177
10 C -0.194 4.194
11 C 0.322 3.678
12 O -0.406 6.406
13 C -0.048 4.048
14 C -0.478 4.478
15 H 0.093 0.907
16 C -0.143 4.143
17 N -0.399 5.399
18 Si 0.722 3.278
19 H -0.189 1.189
20 H -0.207 1.207
21 H -0.204 1.204
22 H 0.060 0.940
23 H 0.076 0.924
24 H 0.060 0.940
25 H 0.063 0.937
26 H 0.096 0.904
27 H 0.138 0.862
28 H 0.099 0.901
29 H 0.089 0.911
30 H 0.100 0.900
31 H 0.087 0.913
32 H 0.089 0.911
33 H 0.101 0.899
34 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -2.792 0.018 -10.019 10.401
hybrid contribution -0.160 -0.021 0.258 0.304
sum -2.952 -0.003 -9.762 10.198
Atomic orbital electron populations
1.21794 0.97051 0.99710 1.01593 1.19539 0.93874 0.91119 1.01151
1.20094 1.19287 0.93038 0.85139 1.42042 1.73807 1.03610 1.06344
0.75264 1.47945 1.64757 1.04229 1.07128 1.22504 0.94956 0.89943
0.88317 1.23353 0.97148 1.02158 0.96290 1.22705 0.96778 1.00546
0.97684 1.23467 0.98724 1.00977 0.96197 1.19279 0.79515 0.90393
0.78567 1.90654 1.49596 1.41176 1.59207 1.18881 1.02775 0.90494
0.92645 1.18343 1.18134 1.19999 0.91291 0.90744 1.25667 0.94156
0.94243 1.00221 1.69925 1.08683 1.25654 1.35685 0.86489 0.78964
0.78379 0.84017 1.18893 1.20698 1.20392 0.94003 0.92384 0.94001
0.93706 0.90384 0.86220 0.90057 0.91078 0.90006 0.91258 0.91089
0.89864 0.91931
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.32 9.90 37.16 0.37 -1.96 16
2 C -0.02 -0.32 6.33 -27.88 -0.18 -0.50 16
3 C -0.07 -1.62 6.58 -80.63 -0.53 -2.15 16
4 N -0.53 -10.61 6.72 34.27 0.23 -10.38 16
5 H 0.41 6.68 8.20 -182.86 -1.50 5.18 16
6 N -0.42 -9.34 3.67 -53.97 -0.20 -9.54 16
7 C 0.15 2.61 4.61 -67.12 -0.31 2.30 16
8 C -0.15 -2.05 7.75 -25.92 -0.20 -2.25 16
9 C -0.14 -1.61 8.08 -25.92 -0.21 -1.82 16
10 C -0.15 -2.28 7.88 -25.92 -0.20 -2.48 16
11 C 0.53 14.73 7.66 -12.34 -0.09 14.64 16
12 O -0.53 -16.48 15.38 5.25 0.08 -16.40 16
13 C -0.04 -1.00 5.80 -104.65 -0.61 -1.60 16
14 C -0.44 -12.54 8.84 -37.98 -0.34 -12.88 16
15 H 0.07 1.98 7.88 -52.48 -0.41 1.57 16
16 C 0.08 2.13 5.20 -17.31 -0.09 2.04 16
17 N -0.77 -23.11 10.83 55.54 0.60 -22.51 16
18 Si 0.90 20.94 29.60 -169.99 -5.03 15.90 16
19 H -0.26 -5.98 7.11 56.52 0.40 -5.58 16
20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16
21 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16
22 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16
23 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16
24 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16
25 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16
26 H 0.08 1.52 7.80 -51.93 -0.41 1.11 16
27 H 0.12 2.23 7.98 -51.93 -0.41 1.82 16
28 H 0.08 1.08 7.13 -51.93 -0.37 0.71 16
29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16
30 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16
31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16
32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16
33 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16
34 H 0.27 7.55 8.30 -40.82 -0.34 7.21 16
LS Contribution 286.72 15.07 4.32 4.32
Total: -1.00 -33.09 286.72 -8.43 -41.52
By element:
Atomic # 1 Polarization: 9.80 SS G_CDS: -6.04 Total: 3.75 kcal
Atomic # 6 Polarization: -4.27 SS G_CDS: -2.39 Total: -6.66 kcal
Atomic # 7 Polarization: -43.07 SS G_CDS: 0.63 Total: -42.44 kcal
Atomic # 8 Polarization: -16.48 SS G_CDS: 0.08 Total: -16.40 kcal
Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.90 kcal
Total LS contribution 4.32 Total: 4.32 kcal
Total: -33.09 -8.43 -41.52 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261002258.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 93.519 kcal
(2) G-P(sol) polarization free energy of solvation -33.087 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.433 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.429 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.515 kcal
(6) G-S(sol) free energy of system = (1) + (5) 52.004 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds