Wall clock time and date at job start Mon Mar 30 2020 03:07:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.50701 * 109.46852 * 2 1
4 4 N 1.35502 * 125.88921 * 274.68901 * 3 2 1
5 5 H 0.96994 * 125.01479 * 0.23046 * 4 3 2
6 6 N 1.39758 * 109.96319 * 180.26862 * 4 3 2
7 7 C 1.46496 * 125.56187 * 180.02562 * 6 4 3
8 8 C 1.53781 * 113.61677 * 37.51357 * 7 6 4
9 9 C 1.53780 * 87.08257 * 220.02210 * 8 7 6
10 10 C 1.53779 * 87.08027 * 25.43175 * 9 8 7
11 11 C 1.34873 * 108.87209 * 359.97438 * 6 4 3
12 12 O 1.21628 * 126.68354 * 180.02562 * 11 6 4
13 13 C 1.39163 * 125.88523 * 95.00535 * 3 2 1
14 14 C 1.40964 * 126.84641 * 359.72495 * 13 3 2
15 15 H 1.08004 * 119.99900 * 333.69905 * 14 13 3
16 16 C 1.39758 * 119.99921 * 153.68873 * 14 13 3
17 17 N 1.31062 * 120.00098 * 341.56279 * 16 14 13
18 18 Si 1.86805 * 119.99867 * 161.56638 * 16 14 13
19 19 H 1.48497 * 109.47006 * 0.02562 * 18 16 14
20 20 H 1.48505 * 109.47219 * 119.99994 * 18 16 14
21 21 H 1.48501 * 109.46982 * 239.99975 * 18 16 14
22 22 H 1.08998 * 109.46926 * 179.97438 * 1 2 3
23 23 H 1.08996 * 109.46888 * 299.99891 * 1 2 3
24 24 H 1.08999 * 109.46715 * 60.00224 * 1 2 3
25 25 H 1.08996 * 109.46888 * 240.00109 * 2 1 3
26 26 H 1.08996 * 109.46667 * 120.00306 * 2 1 3
27 27 H 1.09000 * 112.85129 * 168.82529 * 7 6 4
28 28 H 1.08996 * 113.61459 * 334.57055 * 8 7 6
29 29 H 1.09001 * 113.61054 * 105.47641 * 8 7 6
30 30 H 1.08996 * 113.61557 * 270.88619 * 9 8 7
31 31 H 1.08998 * 113.69160 * 139.99373 * 9 8 7
32 32 H 1.09004 * 113.61811 * 220.01740 * 10 9 8
33 33 H 1.09007 * 113.68769 * 89.12712 * 10 9 8
34 34 H 0.97002 * 120.00113 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 7 2.2125 2.1997 -1.0941
5 1 2.0331 1.9265 -2.0073
6 7 2.6957 3.4543 -0.7124
7 6 3.0087 4.5594 -1.6217
8 6 2.0310 4.6816 -2.8023
9 6 3.2531 5.0007 -3.6794
10 6 4.0930 4.2171 -2.6570
11 6 2.8258 3.4818 0.6298
12 8 3.2198 4.4153 1.3026
13 6 2.3969 2.1571 1.1232
14 6 2.3631 1.7253 2.4646
15 1 1.6718 0.9521 2.7657
16 6 3.2244 2.2975 3.4048
17 7 4.2881 2.9514 3.0066
18 14 2.8595 2.1301 5.2293
19 1 1.6090 1.3509 5.4145
20 1 3.9842 1.4263 5.8965
21 1 2.6957 3.4795 5.8271
22 1 -0.3633 -1.0277 -0.0005
23 1 -0.3633 0.5138 0.8900
24 1 -0.3633 0.5138 -0.8900
25 1 1.8933 -0.5138 -0.8900
26 1 1.8933 -0.5139 0.8899
27 1 3.1848 5.5000 -1.0998
28 1 1.5404 3.7435 -3.0618
29 1 1.3330 5.5133 -2.7069
30 1 3.4953 6.0626 -3.7211
31 1 3.2187 4.5355 -4.6645
32 1 5.0596 4.6737 -2.4442
33 1 4.1670 3.1517 -2.8757
34 1 4.8861 3.3483 3.6592
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000261002258.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:07:03
Heat of formation + Delta-G solvation = 29.647576 kcal
Electronic energy + Delta-G solvation = -17148.879841 eV
Core-core repulsion = 14469.567155 eV
Total energy + Delta-G solvation = -2679.312686 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-41.63548 -39.14320 -37.48916 -35.22836 -34.17807 -31.09583 -30.63025 -27.12495
-26.63010 -25.92150 -23.82261 -21.48213 -20.97413 -20.30242 -18.83209 -18.00595
-16.62193 -16.53916 -16.06180 -15.84243 -15.56604 -14.95579 -14.52131 -14.14448
-13.94507 -13.56546 -13.46267 -13.29239 -12.98334 -12.70307 -12.49042 -12.35358
-12.18648 -12.07818 -11.87776 -11.57680 -11.48679 -11.46597 -10.77740 -9.98567
-9.38894 -8.47019 -8.11242 -5.68995 1.23635 1.37574 1.41810 1.56493
1.57868 2.39856 2.72754 3.36520 3.56151 3.62564 3.69394 3.91661
3.95831 4.33395 4.47577 4.52514 4.67131 4.74122 4.75648 4.96052
4.96918 5.00856 5.03526 5.13717 5.26486 5.32759 5.37884 5.56115
5.61354 5.81412 5.87175 6.49365 7.07098 7.09560 7.30971 7.57209
8.05236 8.78708
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.025205 B = 0.009093 C = 0.007099
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1110.627242 B = 3078.587259 C = 3942.993307
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C -0.024 4.024
3 C -0.007 4.007
4 N -0.497 5.497
5 H 0.434 0.566
6 N -0.415 5.415
7 C 0.114 3.886
8 C -0.137 4.137
9 C -0.113 4.113
10 C -0.152 4.152
11 C 0.493 3.507
12 O -0.587 6.587
13 C -0.116 4.116
14 C -0.473 4.473
15 H 0.076 0.924
16 C 0.019 3.981
17 N -0.830 5.830
18 Si 0.964 3.036
19 H -0.251 1.251
20 H -0.271 1.271
21 H -0.288 1.288
22 H 0.077 0.923
23 H 0.033 0.967
24 H 0.056 0.944
25 H 0.085 0.915
26 H 0.068 0.932
27 H 0.099 0.901
28 H 0.092 0.908
29 H 0.080 0.920
30 H 0.096 0.904
31 H 0.099 0.901
32 H 0.065 0.935
33 H 0.083 0.917
34 H 0.264 0.736
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.943 -2.535 -13.682 14.767
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.193 4.193
2 C -0.063 4.063
3 C -0.116 4.116
4 N -0.228 5.228
5 H 0.279 0.721
6 N -0.235 5.235
7 C 0.012 3.988
8 C -0.176 4.176
9 C -0.151 4.151
10 C -0.191 4.191
11 C 0.289 3.711
12 O -0.467 6.467
13 C -0.128 4.128
14 C -0.507 4.507
15 H 0.094 0.906
16 C -0.193 4.193
17 N -0.459 5.459
18 Si 0.788 3.212
19 H -0.174 1.174
20 H -0.196 1.196
21 H -0.215 1.215
22 H 0.096 0.904
23 H 0.053 0.947
24 H 0.075 0.925
25 H 0.103 0.897
26 H 0.086 0.914
27 H 0.117 0.883
28 H 0.110 0.890
29 H 0.099 0.901
30 H 0.115 0.885
31 H 0.118 0.882
32 H 0.084 0.916
33 H 0.102 0.898
34 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges -4.480 -1.720 -13.376 14.210
hybrid contribution 0.247 0.384 0.878 0.990
sum -4.233 -1.337 -12.497 13.262
Atomic orbital electron populations
1.21685 0.94382 1.02032 1.01204 1.19804 0.95943 0.87865 1.02703
1.20960 1.11948 0.94205 0.84511 1.42227 1.70601 1.02682 1.07303
0.72142 1.48024 1.63353 1.05448 1.06695 1.23095 0.99097 0.87918
0.88721 1.23333 0.97432 1.03167 0.93622 1.22646 0.93489 1.01198
0.97745 1.23465 0.98073 1.01605 0.95962 1.19486 0.80811 0.90441
0.80324 1.90578 1.52683 1.42586 1.60882 1.19229 1.07639 0.91732
0.94157 1.18536 1.18583 1.21110 0.92497 0.90598 1.26506 0.93832
0.94258 1.04692 1.70066 1.10394 1.28949 1.36500 0.85440 0.79436
0.77808 0.78562 1.17392 1.19585 1.21456 0.90441 0.94727 0.92476
0.89679 0.91354 0.88349 0.88998 0.90111 0.88536 0.88202 0.91594
0.89794 0.92698
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.81 9.90 71.98 0.71 -3.10 16
2 C -0.02 -0.80 6.33 29.85 0.19 -0.61 16
3 C -0.01 -0.32 6.58 42.22 0.28 -0.04 16
4 N -0.50 -18.75 6.72 -45.49 -0.31 -19.05 16
5 H 0.43 12.10 8.20 -213.55 -1.75 10.34 16
6 N -0.41 -18.51 3.67 -442.84 -1.62 -20.13 16
7 C 0.11 3.97 4.61 45.52 0.21 4.18 16
8 C -0.14 -3.26 7.75 31.12 0.24 -3.02 16
9 C -0.11 -2.13 8.08 31.12 0.25 -1.88 16
10 C -0.15 -4.16 7.88 31.12 0.25 -3.91 16
11 C 0.49 28.83 7.66 86.73 0.66 29.49 16
12 O -0.59 -39.15 15.38 -4.12 -0.06 -39.22 16
13 C -0.12 -6.54 5.80 -19.88 -0.12 -6.66 16
14 C -0.47 -27.85 8.84 23.31 0.21 -27.64 16
15 H 0.08 4.19 7.88 -2.91 -0.02 4.16 16
16 C 0.02 1.11 5.20 85.18 0.44 1.55 16
17 N -0.83 -53.23 10.83 21.81 0.24 -52.99 16
18 Si 0.96 45.47 29.60 68.60 2.03 47.50 16
19 H -0.25 -11.00 7.11 99.48 0.71 -10.29 16
20 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16
21 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16
22 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16
23 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16
24 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16
25 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16
26 H 0.07 2.50 7.80 -2.39 -0.02 2.49 16
27 H 0.10 3.84 7.98 -2.39 -0.02 3.82 16
28 H 0.09 1.99 7.13 -2.39 -0.02 1.98 16
29 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16
30 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16
31 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16
32 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16
33 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16
34 H 0.26 15.99 8.30 -92.71 -0.77 15.22 16
Total: -1.00 -79.95 286.72 2.95 -77.01
By element:
Atomic # 1 Polarization: 19.17 SS G_CDS: -0.65 Total: 18.52 kcal
Atomic # 6 Polarization: -14.96 SS G_CDS: 3.32 Total: -11.64 kcal
Atomic # 7 Polarization: -90.48 SS G_CDS: -1.69 Total: -92.17 kcal
Atomic # 8 Polarization: -39.15 SS G_CDS: -0.06 Total: -39.22 kcal
Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal
Total: -79.95 2.95 -77.01 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261002258.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 106.654 kcal
(2) G-P(sol) polarization free energy of solvation -79.952 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.701 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.946 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.006 kcal
(6) G-S(sol) free energy of system = (1) + (5) 29.648 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds