Wall clock time and date at job start Mon Mar 30 2020 03:28:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.53001 * 109.46941 * 2 1
4 4 N 1.46500 * 109.47182 * 119.99398 * 2 1 3
5 5 N 1.39917 * 126.19757 * 297.84435 * 4 2 1
6 6 C 1.31653 * 109.21050 * 180.02562 * 5 4 2
7 7 C 1.38668 * 108.82918 * 359.97438 * 6 5 4
8 8 C 1.37396 * 126.19421 * 117.84165 * 4 2 1
9 9 C 1.40233 * 126.65908 * 359.97438 * 8 4 2
10 10 H 1.07995 * 120.00010 * 333.21296 * 9 8 4
11 11 C 1.40173 * 119.99853 * 153.21564 * 9 8 4
12 12 N 1.30756 * 120.00061 * 343.82103 * 11 9 8
13 13 Si 1.86799 * 119.99519 * 163.81984 * 11 9 8
14 14 H 1.48505 * 109.46848 * 90.00349 * 13 11 9
15 15 H 1.48506 * 109.46941 * 209.99636 * 13 11 9
16 16 H 1.48496 * 109.47571 * 330.00026 * 13 11 9
17 17 C 1.51242 * 109.85757 * 180.02562 * 7 6 5
18 18 H 1.09003 * 110.30758 * 258.23465 * 17 7 6
19 19 O 1.42894 * 110.31538 * 136.16119 * 17 7 6
20 20 C 1.54618 * 105.14834 * 17.15348 * 17 7 6
21 21 C 1.51481 * 141.60824 * 179.97438 * 6 5 4
22 22 H 1.09005 * 109.46965 * 299.99908 * 1 2 3
23 23 H 1.08992 * 109.47488 * 60.00315 * 1 2 3
24 24 H 1.09004 * 109.47232 * 180.02562 * 1 2 3
25 25 H 1.08993 * 109.47618 * 240.00030 * 2 1 3
26 26 H 1.08999 * 109.47200 * 180.02562 * 3 2 1
27 27 H 1.09004 * 109.47015 * 299.99488 * 3 2 1
28 28 H 1.08994 * 109.47417 * 59.99849 * 3 2 1
29 29 H 0.96993 * 119.99809 * 179.13490 * 12 11 9
30 30 H 0.96699 * 114.00616 * 179.97438 * 19 17 7
31 31 H 1.09007 * 110.88650 * 215.41739 * 20 17 7
32 32 H 1.09004 * 110.82860 * 91.84484 * 20 17 7
33 33 H 1.09001 * 110.29781 * 281.72812 * 21 6 5
34 34 H 1.09001 * 110.29616 * 43.77141 * 21 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 7 2.0183 -0.6905 1.1962
5 7 1.7965 -0.3031 2.5223
6 6 2.3861 -1.1609 3.3285
7 6 3.0111 -2.1355 2.5654
8 6 2.7770 -1.8357 1.2191
9 6 3.2288 -2.5631 0.1085
10 1 2.6769 -2.5305 -0.8192
11 6 4.3967 -3.3324 0.2026
12 7 5.2311 -3.1363 1.1900
13 14 4.7611 -4.6379 -1.0829
14 1 5.5441 -4.0357 -2.1918
15 1 5.5446 -5.7371 -0.4638
16 1 3.4845 -5.1787 -1.6150
17 6 3.6965 -3.1352 3.4700
18 1 4.7681 -2.9390 3.5073
19 8 3.4525 -4.4668 3.0127
20 6 3.0627 -2.9199 4.8637
21 6 2.6134 -1.4448 4.7990
22 1 -0.3633 0.5138 0.8900
23 1 -0.3634 0.5137 -0.8899
24 1 -0.3634 -1.0277 0.0005
25 1 1.8934 -0.5138 -0.8899
26 1 3.1299 1.4426 -0.0005
27 1 1.6766 1.9563 -0.8901
28 1 1.6766 1.9564 0.8899
29 1 6.0330 -3.6771 1.2620
30 1 3.8684 -5.1513 3.5546
31 1 3.8004 -3.0657 5.6529
32 1 2.2064 -3.5792 5.0061
33 1 3.3941 -0.7943 5.1934
34 1 1.6881 -1.3063 5.3583
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000261051718.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:28:53
Heat of formation + Delta-G solvation = 15.122799 kcal
Electronic energy + Delta-G solvation = -17459.929228 eV
Core-core repulsion = 14779.986701 eV
Total energy + Delta-G solvation = -2679.942527 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-39.48427 -36.47264 -34.46360 -33.59092 -32.49736 -29.21266 -27.18733 -26.65779
-25.94680 -24.13985 -21.87234 -19.77590 -19.17214 -17.51292 -16.63158 -16.06693
-15.32209 -14.45015 -13.91730 -13.77762 -13.48534 -13.27898 -12.66383 -12.35198
-11.93415 -11.79697 -11.68159 -11.55778 -11.34872 -11.11101 -10.99064 -10.82832
-10.64656 -10.40176 -10.27289 -9.79757 -9.69126 -9.14216 -8.76419 -8.43046
-7.54741 -6.69188 -6.52862 -4.35335 3.02773 3.15950 3.21052 3.64567
3.91410 4.11878 4.35679 5.20344 5.29373 5.51645 5.62019 5.72059
5.77402 5.85644 6.03780 6.10541 6.16419 6.31437 6.32484 6.34854
6.40273 6.49429 6.69278 6.73367 6.78786 7.10655 7.19014 7.39946
7.57774 7.68317 8.04259 8.46328 8.55120 8.88577 8.95424 9.22711
9.65964 10.37538
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.017704 B = 0.013704 C = 0.008527
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1581.190749 B = 2042.718778 C = 3282.995795
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C 0.178 3.822
3 C -0.152 4.152
4 N -0.419 5.419
5 N -0.364 5.364
6 C 0.043 3.957
7 C -0.322 4.322
8 C 0.300 3.700
9 C -0.466 4.466
10 H 0.073 0.927
11 C 0.102 3.898
12 N -0.770 5.770
13 Si 0.913 3.087
14 H -0.275 1.275
15 H -0.277 1.277
16 H -0.264 1.264
17 C 0.221 3.779
18 H 0.055 0.945
19 O -0.553 6.553
20 C -0.157 4.157
21 C -0.017 4.017
22 H 0.061 0.939
23 H 0.057 0.943
24 H 0.053 0.947
25 H 0.091 0.909
26 H 0.055 0.945
27 H 0.056 0.944
28 H 0.061 0.939
29 H 0.276 0.724
30 H 0.343 0.657
31 H 0.061 0.939
32 H 0.067 0.933
33 H 0.068 0.932
34 H 0.058 0.942
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.240 0.499 1.075 1.715
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.215 4.215
2 C 0.074 3.926
3 C -0.210 4.210
4 N -0.207 5.207
5 N -0.187 5.187
6 C -0.119 4.119
7 C -0.335 4.335
8 C 0.181 3.819
9 C -0.502 4.502
10 H 0.091 0.909
11 C -0.120 4.120
12 N -0.395 5.395
13 Si 0.738 3.262
14 H -0.201 1.201
15 H -0.202 1.202
16 H -0.188 1.188
17 C 0.162 3.838
18 H 0.073 0.927
19 O -0.354 6.354
20 C -0.196 4.196
21 C -0.056 4.056
22 H 0.080 0.920
23 H 0.076 0.924
24 H 0.073 0.927
25 H 0.109 0.891
26 H 0.075 0.925
27 H 0.075 0.925
28 H 0.080 0.920
29 H 0.087 0.913
30 H 0.185 0.815
31 H 0.079 0.921
32 H 0.086 0.914
33 H 0.086 0.914
34 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges -2.144 1.949 0.564 2.952
hybrid contribution 1.045 -1.645 -0.127 1.953
sum -1.099 0.304 0.437 1.221
Atomic orbital electron populations
1.22126 0.95812 1.01961 1.01553 1.20642 0.93319 0.92718 0.85902
1.22040 1.01555 0.95941 1.01446 1.48722 1.47911 1.21053 1.02979
1.76575 1.30730 1.24495 0.86902 1.22317 0.98011 0.95968 0.95648
1.19602 1.18678 1.03710 0.91494 1.17785 0.86811 0.83862 0.93448
1.18407 1.08563 1.25943 0.97245 0.90922 1.25502 0.94585 0.96046
0.95898 1.69757 1.08136 1.33560 1.28019 0.86264 0.79041 0.80497
0.80389 1.20092 1.20172 1.18780 1.20163 0.96124 0.79883 0.87674
0.92740 1.86800 1.76603 1.15852 1.56151 1.23197 1.00496 0.96415
0.99468 1.20167 0.99917 0.95685 0.89835 0.92020 0.92434 0.92740
0.89091 0.92541 0.92498 0.91999 0.91345 0.81472 0.92051 0.91429
0.91370 0.92310
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.78 9.48 37.16 0.35 -2.43 16
2 C 0.18 3.65 3.67 -67.93 -0.25 3.41 16
3 C -0.15 -2.73 9.43 37.16 0.35 -2.38 16
4 N -0.42 -10.66 3.35 -52.15 -0.17 -10.83 16
5 N -0.36 -9.49 12.40 33.76 0.42 -9.07 16
6 C 0.04 1.09 8.05 -82.13 -0.66 0.43 16
7 C -0.32 -8.69 5.60 -103.58 -0.58 -9.27 16
8 C 0.30 8.35 6.50 -84.00 -0.55 7.80 16
9 C -0.47 -12.63 8.76 -38.11 -0.33 -12.97 16
10 H 0.07 1.88 7.30 -52.49 -0.38 1.49 16
11 C 0.10 2.60 5.16 -17.28 -0.09 2.51 16
12 N -0.77 -19.93 9.74 55.56 0.54 -19.39 16
13 Si 0.91 19.43 29.59 -169.99 -5.03 14.40 16
14 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16
15 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16
16 H -0.26 -5.66 7.11 56.52 0.40 -5.25 16
17 C 0.22 5.15 2.93 -26.77 -0.08 5.07 16
18 H 0.06 1.33 7.26 -51.93 -0.38 0.95 16
19 O -0.55 -12.76 12.70 -35.23 -0.45 -13.21 16
20 C -0.16 -2.98 6.81 -25.18 -0.17 -3.15 16
21 C -0.02 -0.33 6.76 -26.80 -0.18 -0.51 16
22 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16
23 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16
24 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16
25 H 0.09 1.85 6.99 -51.93 -0.36 1.49 16
26 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16
27 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16
28 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16
29 H 0.28 6.55 8.29 -40.82 -0.34 6.21 16
30 H 0.34 6.06 9.12 45.56 0.42 6.48 16
31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16
32 H 0.07 1.25 8.12 -51.93 -0.42 0.83 16
33 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16
34 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16
LS Contribution 282.60 15.07 4.26 4.26
Total: -1.00 -31.59 282.60 -6.69 -38.28
By element:
Atomic # 1 Polarization: 11.13 SS G_CDS: -4.07 Total: 7.06 kcal
Atomic # 6 Polarization: -9.30 SS G_CDS: -2.19 Total: -11.49 kcal
Atomic # 7 Polarization: -40.08 SS G_CDS: 0.79 Total: -39.29 kcal
Atomic # 8 Polarization: -12.76 SS G_CDS: -0.45 Total: -13.21 kcal
Atomic # 14 Polarization: 19.43 SS G_CDS: -5.03 Total: 14.40 kcal
Total LS contribution 4.26 Total: 4.26 kcal
Total: -31.59 -6.69 -38.28 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261051718.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 53.398 kcal
(2) G-P(sol) polarization free energy of solvation -31.586 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.812 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.689 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.275 kcal
(6) G-S(sol) free energy of system = (1) + (5) 15.123 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds