Wall clock time and date at job start Mon Mar 30 2020 03:28:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.53001 * 109.46941 * 2 1
4 4 N 1.46500 * 109.47182 * 119.99398 * 2 1 3
5 5 N 1.39917 * 126.19757 * 297.84435 * 4 2 1
6 6 C 1.31653 * 109.21050 * 180.02562 * 5 4 2
7 7 C 1.38668 * 108.82918 * 359.97438 * 6 5 4
8 8 C 1.37396 * 126.19421 * 117.84165 * 4 2 1
9 9 C 1.40233 * 126.65908 * 359.97438 * 8 4 2
10 10 H 1.07995 * 120.00010 * 333.21296 * 9 8 4
11 11 C 1.40173 * 119.99853 * 153.21564 * 9 8 4
12 12 N 1.30756 * 120.00061 * 343.82103 * 11 9 8
13 13 Si 1.86799 * 119.99519 * 163.81984 * 11 9 8
14 14 H 1.48505 * 109.46848 * 90.00349 * 13 11 9
15 15 H 1.48506 * 109.46941 * 209.99636 * 13 11 9
16 16 H 1.48496 * 109.47571 * 330.00026 * 13 11 9
17 17 C 1.51242 * 109.85757 * 180.02562 * 7 6 5
18 18 H 1.09003 * 110.30758 * 258.23465 * 17 7 6
19 19 O 1.42894 * 110.31538 * 136.16119 * 17 7 6
20 20 C 1.54618 * 105.14834 * 17.15348 * 17 7 6
21 21 C 1.51481 * 141.60824 * 179.97438 * 6 5 4
22 22 H 1.09005 * 109.46965 * 299.99908 * 1 2 3
23 23 H 1.08992 * 109.47488 * 60.00315 * 1 2 3
24 24 H 1.09004 * 109.47232 * 180.02562 * 1 2 3
25 25 H 1.08993 * 109.47618 * 240.00030 * 2 1 3
26 26 H 1.08999 * 109.47200 * 180.02562 * 3 2 1
27 27 H 1.09004 * 109.47015 * 299.99488 * 3 2 1
28 28 H 1.08994 * 109.47417 * 59.99849 * 3 2 1
29 29 H 0.96993 * 119.99809 * 179.13490 * 12 11 9
30 30 H 0.96699 * 114.00616 * 179.97438 * 19 17 7
31 31 H 1.09007 * 110.88650 * 215.41739 * 20 17 7
32 32 H 1.09004 * 110.82860 * 91.84484 * 20 17 7
33 33 H 1.09001 * 110.29781 * 281.72812 * 21 6 5
34 34 H 1.09001 * 110.29616 * 43.77141 * 21 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 7 2.0183 -0.6905 1.1962
5 7 1.7965 -0.3031 2.5223
6 6 2.3861 -1.1609 3.3285
7 6 3.0111 -2.1355 2.5654
8 6 2.7770 -1.8357 1.2191
9 6 3.2288 -2.5631 0.1085
10 1 2.6769 -2.5305 -0.8192
11 6 4.3967 -3.3324 0.2026
12 7 5.2311 -3.1363 1.1900
13 14 4.7611 -4.6379 -1.0829
14 1 5.5441 -4.0357 -2.1918
15 1 5.5446 -5.7371 -0.4638
16 1 3.4845 -5.1787 -1.6150
17 6 3.6965 -3.1352 3.4700
18 1 4.7681 -2.9390 3.5073
19 8 3.4525 -4.4668 3.0127
20 6 3.0627 -2.9199 4.8637
21 6 2.6134 -1.4448 4.7990
22 1 -0.3633 0.5138 0.8900
23 1 -0.3634 0.5137 -0.8899
24 1 -0.3634 -1.0277 0.0005
25 1 1.8934 -0.5138 -0.8899
26 1 3.1299 1.4426 -0.0005
27 1 1.6766 1.9563 -0.8901
28 1 1.6766 1.9564 0.8899
29 1 6.0330 -3.6771 1.2620
30 1 3.8684 -5.1513 3.5546
31 1 3.8004 -3.0657 5.6529
32 1 2.2064 -3.5792 5.0061
33 1 3.3941 -0.7943 5.1934
34 1 1.6881 -1.3063 5.3583
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000261051718.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:28:52
Heat of formation + Delta-G solvation = -6.934083 kcal
Electronic energy + Delta-G solvation = -17460.885686 eV
Core-core repulsion = 14779.986701 eV
Total energy + Delta-G solvation = -2680.898985 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-41.33661 -38.19133 -36.16489 -35.47148 -34.19151 -31.13979 -28.95411 -28.12001
-27.77508 -25.94502 -23.57759 -21.49805 -21.01007 -19.32660 -18.50739 -17.80948
-17.18055 -16.17433 -15.59723 -15.43672 -15.19986 -14.88295 -14.35465 -14.10486
-13.59136 -13.52589 -13.28298 -13.11454 -13.01036 -12.79072 -12.60416 -12.43563
-12.28120 -12.01279 -11.91452 -11.60987 -11.46824 -11.00204 -10.50295 -10.34072
-9.46279 -8.60439 -8.44026 -6.35570 1.30569 1.42483 1.54170 1.77028
2.17415 2.34557 2.45296 3.30050 3.59107 3.95375 4.01480 4.16964
4.23230 4.29660 4.50859 4.60150 4.70100 4.76025 4.84524 4.85608
4.88681 4.95316 5.10662 5.20329 5.23989 5.29394 5.42747 5.64052
5.68177 5.82916 6.10071 6.57442 6.63012 6.91903 7.28585 7.42020
7.71617 8.49510
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.017704 B = 0.013704 C = 0.008527
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1581.190749 B = 2042.718778 C = 3282.995795
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C 0.159 3.841
3 C -0.139 4.139
4 N -0.425 5.425
5 N -0.383 5.383
6 C 0.023 3.977
7 C -0.358 4.358
8 C 0.261 3.739
9 C -0.497 4.497
10 H 0.070 0.930
11 C 0.063 3.937
12 N -0.791 5.791
13 Si 0.981 3.019
14 H -0.263 1.263
15 H -0.267 1.267
16 H -0.268 1.268
17 C 0.220 3.780
18 H 0.038 0.962
19 O -0.574 6.574
20 C -0.139 4.139
21 C -0.015 4.015
22 H 0.051 0.949
23 H 0.100 0.900
24 H 0.037 0.963
25 H 0.087 0.913
26 H 0.035 0.965
27 H 0.100 0.900
28 H 0.052 0.948
29 H 0.283 0.717
30 H 0.365 0.635
31 H 0.101 0.899
32 H 0.072 0.928
33 H 0.085 0.915
34 H 0.080 0.920
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.265 0.168 1.238 1.777
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C 0.057 3.943
3 C -0.197 4.197
4 N -0.213 5.213
5 N -0.206 5.206
6 C -0.140 4.140
7 C -0.370 4.370
8 C 0.141 3.859
9 C -0.533 4.533
10 H 0.088 0.912
11 C -0.157 4.157
12 N -0.417 5.417
13 Si 0.803 3.197
14 H -0.188 1.188
15 H -0.192 1.192
16 H -0.193 1.193
17 C 0.161 3.839
18 H 0.056 0.944
19 O -0.379 6.379
20 C -0.177 4.177
21 C -0.054 4.054
22 H 0.070 0.930
23 H 0.119 0.881
24 H 0.056 0.944
25 H 0.105 0.895
26 H 0.055 0.945
27 H 0.118 0.882
28 H 0.071 0.929
29 H 0.093 0.907
30 H 0.211 0.789
31 H 0.119 0.881
32 H 0.091 0.909
33 H 0.103 0.897
34 H 0.098 0.902
Dipole moment (debyes) X Y Z Total
from point charges -2.171 1.634 0.735 2.815
hybrid contribution 1.048 -1.495 -0.188 1.835
sum -1.124 0.139 0.547 1.258
Atomic orbital electron populations
1.22018 0.93571 1.01374 1.03138 1.21088 0.95202 0.93678 0.84343
1.21945 1.00160 0.94508 1.03079 1.49133 1.47614 1.20768 1.03787
1.76443 1.31271 1.25283 0.87557 1.23229 0.97290 0.95230 0.98213
1.20342 1.19299 1.05484 0.91879 1.18327 0.88081 0.84988 0.94522
1.18665 1.09731 1.27621 0.97287 0.91170 1.26300 0.93869 0.97512
0.97986 1.69814 1.08431 1.34164 1.29242 0.85239 0.78641 0.77801
0.78020 1.18818 1.19156 1.19284 1.20138 0.95183 0.79376 0.89224
0.94397 1.86720 1.77093 1.16511 1.57566 1.23105 1.01298 0.95580
0.97760 1.20365 1.01582 0.96672 0.86794 0.92970 0.88147 0.94379
0.89523 0.94544 0.88156 0.92919 0.90657 0.78915 0.88106 0.90905
0.89661 0.90159
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -4.99 9.48 71.98 0.68 -4.31 16
2 C 0.16 6.58 3.67 44.99 0.17 6.74 16
3 C -0.14 -4.92 9.43 71.98 0.68 -4.24 16
4 N -0.43 -22.15 3.35 -318.89 -1.07 -23.21 16
5 N -0.38 -20.22 12.40 -47.10 -0.58 -20.81 16
6 C 0.02 1.16 8.05 42.94 0.35 1.51 16
7 C -0.36 -19.58 5.60 -19.19 -0.11 -19.69 16
8 C 0.26 14.94 6.50 39.16 0.25 15.20 16
9 C -0.50 -27.73 8.76 23.23 0.20 -27.53 16
10 H 0.07 3.76 7.30 -2.91 -0.02 3.74 16
11 C 0.06 3.26 5.16 85.32 0.44 3.70 16
12 N -0.79 -41.41 9.74 21.87 0.21 -41.20 16
13 Si 0.98 39.87 29.59 68.60 2.03 41.90 16
14 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16
15 H -0.27 -10.33 7.11 99.48 0.71 -9.63 16
16 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16
17 C 0.22 10.17 2.93 30.57 0.09 10.26 16
18 H 0.04 1.86 7.26 -2.39 -0.02 1.84 16
19 O -0.57 -26.28 12.70 -148.98 -1.89 -28.17 16
20 C -0.14 -4.94 6.81 31.60 0.22 -4.73 16
21 C -0.01 -0.57 6.76 30.55 0.21 -0.36 16
22 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16
23 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16
24 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16
25 H 0.09 3.60 6.99 -2.39 -0.02 3.58 16
26 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16
27 H 0.10 2.63 8.14 -2.38 -0.02 2.61 16
28 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16
29 H 0.28 13.46 8.29 -92.71 -0.77 12.69 16
30 H 0.37 12.48 9.12 -74.06 -0.68 11.80 16
31 H 0.10 2.78 8.14 -2.38 -0.02 2.76 16
32 H 0.07 2.51 8.12 -2.39 -0.02 2.49 16
33 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16
34 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16
Total: -1.00 -70.25 282.60 2.30 -67.94
By element:
Atomic # 1 Polarization: 26.56 SS G_CDS: 0.43 Total: 26.99 kcal
Atomic # 6 Polarization: -26.62 SS G_CDS: 3.17 Total: -23.45 kcal
Atomic # 7 Polarization: -83.78 SS G_CDS: -1.44 Total: -85.22 kcal
Atomic # 8 Polarization: -26.28 SS G_CDS: -1.89 Total: -28.17 kcal
Atomic # 14 Polarization: 39.87 SS G_CDS: 2.03 Total: 41.90 kcal
Total: -70.25 2.30 -67.94 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261051718.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 61.011 kcal
(2) G-P(sol) polarization free energy of solvation -70.245 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.235 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.300 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.945 kcal
(6) G-S(sol) free energy of system = (1) + (5) -6.934 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds