Wall clock time and date at job start Mon Mar 30 2020 03:28:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.53003 * 109.47451 * 2 1
4 4 N 1.46495 * 109.47507 * 120.00737 * 2 1 3
5 5 N 1.28457 * 124.85037 * 300.02179 * 4 2 1
6 6 C 1.32786 * 109.91541 * 179.97438 * 5 4 2
7 7 C 1.41430 * 126.61697 * 179.97438 * 6 5 4
8 8 H 1.08003 * 119.99756 * 180.02562 * 7 6 5
9 9 C 1.39853 * 120.00031 * 0.03204 * 7 6 5
10 10 N 1.30893 * 120.00342 * 359.97438 * 9 7 6
11 11 Si 1.86804 * 119.99855 * 179.97438 * 9 7 6
12 12 H 1.48500 * 109.46987 * 89.99436 * 11 9 7
13 13 H 1.48497 * 109.47099 * 209.99555 * 11 9 7
14 14 H 1.48507 * 109.46888 * 329.99591 * 11 9 7
15 15 C 1.42120 * 106.75852 * 359.97438 * 6 5 4
16 16 C 1.34754 * 105.82893 * 0.02562 * 15 6 5
17 17 C 1.51268 * 110.18088 * 179.97438 * 16 15 6
18 18 C 1.54487 * 105.03320 * 16.84832 * 17 16 15
19 19 C 1.50960 * 143.58617 * 180.02562 * 15 6 5
20 20 H 1.09002 * 110.34573 * 44.37326 * 19 15 6
21 21 O 1.42897 * 110.34333 * 282.21215 * 19 15 6
22 22 H 1.08999 * 109.47330 * 59.99557 * 1 2 3
23 23 H 1.08995 * 109.47137 * 179.97438 * 1 2 3
24 24 H 1.08999 * 109.46743 * 299.99752 * 1 2 3
25 25 H 1.09003 * 109.46869 * 240.00749 * 2 1 3
26 26 H 1.09000 * 109.47290 * 179.97438 * 3 2 1
27 27 H 1.08999 * 109.47215 * 300.00514 * 3 2 1
28 28 H 1.09003 * 109.46472 * 60.00506 * 3 2 1
29 29 H 0.96994 * 120.00004 * 180.02562 * 10 9 7
30 30 H 1.09000 * 110.32706 * 135.72271 * 17 16 15
31 31 H 1.09002 * 110.32374 * 257.83470 * 17 16 15
32 32 H 1.09007 * 110.92826 * 216.33776 * 18 17 16
33 33 H 1.08993 * 110.95378 * 92.65402 * 18 17 16
34 34 H 0.96701 * 114.00084 * 181.48118 * 21 19 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 2.0184 -0.6907 1.1960
5 7 1.7658 -0.3344 2.4041
6 6 2.3545 -1.1677 3.2539
7 6 2.3093 -1.1037 4.6660
8 1 2.8312 -1.8418 5.2570
9 6 1.5885 -0.0848 5.2971
10 7 0.9562 0.8099 4.5809
11 14 1.5281 -0.0009 7.1623
12 1 2.6554 0.8296 7.6571
13 1 0.2417 0.6058 7.5891
14 1 1.6394 -1.3714 7.7233
15 6 3.0389 -2.1361 2.4705
16 6 2.8040 -1.8026 1.1862
17 6 3.4943 -2.7783 0.2591
18 6 3.8287 -4.0015 1.1415
19 6 3.9085 -3.3676 2.5486
20 1 3.5209 -4.0584 3.2975
21 8 5.2558 -3.0055 2.8579
22 1 -0.3634 0.5139 -0.8899
23 1 -0.3633 -1.0276 -0.0005
24 1 -0.3633 0.5138 0.8900
25 1 1.8932 -0.5137 -0.8901
26 1 3.1300 1.4425 0.0005
27 1 1.6767 1.9564 -0.8899
28 1 1.6767 1.9562 0.8901
29 1 0.4566 1.5167 5.0187
30 1 2.8258 -3.0680 -0.5516
31 1 4.4069 -2.3379 -0.1426
32 1 4.7862 -4.4374 0.8561
33 1 3.0338 -4.7456 1.0936
34 1 5.8651 -3.7553 2.8986
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000261058199.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:28:31
Heat of formation + Delta-G solvation = 29.402997 kcal
Electronic energy + Delta-G solvation = -17221.618278 eV
Core-core repulsion = 14542.294987 eV
Total energy + Delta-G solvation = -2679.323291 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-40.81023 -37.14263 -34.77019 -33.64368 -32.69675 -29.25682 -27.19352 -26.76169
-26.14104 -25.18260 -21.21494 -20.98409 -18.62757 -18.49241 -16.59060 -16.16758
-15.57903 -14.84785 -14.45453 -14.00796 -13.87821 -13.08626 -12.78478 -12.51774
-12.07993 -11.89901 -11.77167 -11.65775 -11.57472 -11.05056 -11.03178 -10.77873
-10.69885 -10.56282 -10.25948 -10.12851 -9.64796 -9.24134 -9.05121 -8.29081
-7.30643 -7.11386 -6.18114 -4.01392 3.22750 3.30619 3.35077 3.40361
3.87873 4.29585 4.42657 5.04055 5.19478 5.22308 5.34353 5.47349
5.56135 5.62645 5.81462 5.89073 5.95717 6.03255 6.10573 6.15856
6.21473 6.29783 6.34562 6.41705 6.67240 6.72152 6.79301 7.35202
7.49944 7.60312 7.96382 8.39572 8.48080 8.81417 9.12053 9.40069
10.41432 10.80225
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.018683 B = 0.011211 C = 0.007553
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1498.291342 B = 2497.001716 C = 3706.219213
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C 0.161 3.839
3 C -0.155 4.155
4 N -0.304 5.304
5 N -0.315 5.315
6 C 0.222 3.778
7 C -0.443 4.443
8 H 0.076 0.924
9 C 0.073 3.927
10 N -0.784 5.784
11 Si 0.902 3.098
12 H -0.275 1.275
13 H -0.283 1.283
14 H -0.267 1.267
15 C -0.271 4.271
16 C -0.038 4.038
17 C -0.024 4.024
18 C -0.145 4.145
19 C 0.190 3.810
20 H 0.048 0.952
21 O -0.558 6.558
22 H 0.059 0.941
23 H 0.052 0.948
24 H 0.076 0.924
25 H 0.079 0.921
26 H 0.052 0.948
27 H 0.059 0.941
28 H 0.076 0.924
29 H 0.266 0.734
30 H 0.056 0.944
31 H 0.067 0.933
32 H 0.071 0.929
33 H 0.073 0.927
34 H 0.357 0.643
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.182 -4.945 -8.501 10.074
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.213 4.213
2 C 0.058 3.942
3 C -0.213 4.213
4 N -0.087 5.087
5 N -0.146 5.146
6 C 0.074 3.926
7 C -0.482 4.482
8 H 0.094 0.906
9 C -0.145 4.145
10 N -0.413 5.413
11 Si 0.728 3.272
12 H -0.200 1.200
13 H -0.208 1.208
14 H -0.191 1.191
15 C -0.284 4.284
16 C -0.165 4.165
17 C -0.063 4.063
18 C -0.183 4.183
19 C 0.131 3.869
20 H 0.066 0.934
21 O -0.362 6.362
22 H 0.078 0.922
23 H 0.071 0.929
24 H 0.095 0.905
25 H 0.097 0.903
26 H 0.072 0.928
27 H 0.078 0.922
28 H 0.095 0.905
29 H 0.076 0.924
30 H 0.075 0.925
31 H 0.085 0.915
32 H 0.090 0.910
33 H 0.092 0.908
34 H 0.202 0.798
Dipole moment (debyes) X Y Z Total
from point charges 1.010 -3.076 -8.726 9.307
hybrid contribution 0.667 -1.128 0.852 1.563
sum 1.677 -4.204 -7.874 9.082
Atomic orbital electron populations
1.22062 0.94396 1.02140 1.02703 1.20933 0.94916 0.93448 0.84897
1.22060 1.01139 0.95444 1.02676 1.45175 1.38239 1.19291 1.05998
1.74826 1.28800 1.25394 0.85606 1.18734 0.92077 0.88277 0.93514
1.18522 1.29666 1.11437 0.88540 0.90597 1.25722 0.94454 0.95051
0.99241 1.69965 1.24416 1.11016 1.35880 0.86438 0.77702 0.78967
0.84137 1.20041 1.20819 1.19091 1.20530 1.10161 1.03872 0.93821
1.21751 1.02385 0.94553 0.97845 1.20281 0.97972 0.92608 0.95478
1.23031 1.01243 0.96965 0.97063 1.20146 0.80755 0.93411 0.92591
0.93382 1.86781 1.19414 1.36465 1.93513 0.92244 0.92892 0.90457
0.90306 0.92846 0.92228 0.90469 0.92397 0.92550 0.91484 0.91006
0.90829 0.79835
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.66 9.36 37.15 0.35 -2.32 16
2 C 0.16 3.01 3.60 -67.93 -0.24 2.76 16
3 C -0.16 -2.72 9.37 37.16 0.35 -2.37 16
4 N -0.30 -7.31 3.07 -50.35 -0.15 -7.46 16
5 N -0.32 -8.96 9.91 32.32 0.32 -8.64 16
6 C 0.22 6.57 6.78 -84.75 -0.57 6.00 16
7 C -0.44 -13.16 9.42 -37.76 -0.36 -13.51 16
8 H 0.08 2.18 7.84 -52.48 -0.41 1.77 16
9 C 0.07 2.05 5.49 -17.35 -0.10 1.96 16
10 N -0.78 -22.86 11.98 55.54 0.67 -22.19 16
11 Si 0.90 20.90 29.56 -169.99 -5.02 15.88 16
12 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16
13 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16
14 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16
15 C -0.27 -6.95 6.66 -104.24 -0.69 -7.65 16
16 C -0.04 -0.87 7.52 -81.63 -0.61 -1.48 16
17 C -0.02 -0.42 6.78 -26.82 -0.18 -0.60 16
18 C -0.14 -2.27 6.87 -25.14 -0.17 -2.45 16
19 C 0.19 3.88 4.23 -26.95 -0.11 3.77 16
20 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16
21 O -0.56 -11.10 13.36 -35.23 -0.47 -11.57 16
22 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16
23 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16
24 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16
25 H 0.08 1.25 8.04 -51.93 -0.42 0.84 16
26 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16
27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16
28 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16
29 H 0.27 7.14 8.30 -40.82 -0.34 6.81 16
30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16
31 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16
32 H 0.07 0.91 8.11 -51.92 -0.42 0.49 16
33 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16
34 H 0.36 4.81 9.12 45.56 0.42 5.22 16
LS Contribution 288.11 15.07 4.34 4.34
Total: -1.00 -34.75 288.11 -6.87 -41.62
By element:
Atomic # 1 Polarization: 8.12 SS G_CDS: -4.20 Total: 3.92 kcal
Atomic # 6 Polarization: -13.54 SS G_CDS: -2.35 Total: -15.89 kcal
Atomic # 7 Polarization: -39.13 SS G_CDS: 0.83 Total: -38.30 kcal
Atomic # 8 Polarization: -11.10 SS G_CDS: -0.47 Total: -11.57 kcal
Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal
Total LS contribution 4.34 Total: 4.34 kcal
Total: -34.75 -6.87 -41.62 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261058199.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 71.025 kcal
(2) G-P(sol) polarization free energy of solvation -34.750 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.274 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.871 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.622 kcal
(6) G-S(sol) free energy of system = (1) + (5) 29.403 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds