Wall clock time and date at job start Mon Mar 30 2020 03:28:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.53003 * 109.47451 * 2 1
4 4 N 1.46495 * 109.47507 * 120.00737 * 2 1 3
5 5 N 1.28457 * 124.85037 * 300.02179 * 4 2 1
6 6 C 1.32786 * 109.91541 * 179.97438 * 5 4 2
7 7 C 1.41430 * 126.61697 * 179.97438 * 6 5 4
8 8 H 1.08003 * 119.99756 * 180.02562 * 7 6 5
9 9 C 1.39853 * 120.00031 * 0.03204 * 7 6 5
10 10 N 1.30893 * 120.00342 * 359.97438 * 9 7 6
11 11 Si 1.86804 * 119.99855 * 179.97438 * 9 7 6
12 12 H 1.48500 * 109.46987 * 89.99436 * 11 9 7
13 13 H 1.48497 * 109.47099 * 209.99555 * 11 9 7
14 14 H 1.48507 * 109.46888 * 329.99591 * 11 9 7
15 15 C 1.42120 * 106.75852 * 359.97438 * 6 5 4
16 16 C 1.34754 * 105.82893 * 0.02562 * 15 6 5
17 17 C 1.51268 * 110.18088 * 179.97438 * 16 15 6
18 18 C 1.54487 * 105.03320 * 16.84832 * 17 16 15
19 19 C 1.50960 * 143.58617 * 180.02562 * 15 6 5
20 20 H 1.09002 * 110.34573 * 44.37326 * 19 15 6
21 21 O 1.42897 * 110.34333 * 282.21215 * 19 15 6
22 22 H 1.08999 * 109.47330 * 59.99557 * 1 2 3
23 23 H 1.08995 * 109.47137 * 179.97438 * 1 2 3
24 24 H 1.08999 * 109.46743 * 299.99752 * 1 2 3
25 25 H 1.09003 * 109.46869 * 240.00749 * 2 1 3
26 26 H 1.09000 * 109.47290 * 179.97438 * 3 2 1
27 27 H 1.08999 * 109.47215 * 300.00514 * 3 2 1
28 28 H 1.09003 * 109.46472 * 60.00506 * 3 2 1
29 29 H 0.96994 * 120.00004 * 180.02562 * 10 9 7
30 30 H 1.09000 * 110.32706 * 135.72271 * 17 16 15
31 31 H 1.09002 * 110.32374 * 257.83470 * 17 16 15
32 32 H 1.09007 * 110.92826 * 216.33776 * 18 17 16
33 33 H 1.08993 * 110.95378 * 92.65402 * 18 17 16
34 34 H 0.96701 * 114.00084 * 181.48118 * 21 19 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 2.0184 -0.6907 1.1960
5 7 1.7658 -0.3344 2.4041
6 6 2.3545 -1.1677 3.2539
7 6 2.3093 -1.1037 4.6660
8 1 2.8312 -1.8418 5.2570
9 6 1.5885 -0.0848 5.2971
10 7 0.9562 0.8099 4.5809
11 14 1.5281 -0.0009 7.1623
12 1 2.6554 0.8296 7.6571
13 1 0.2417 0.6058 7.5891
14 1 1.6394 -1.3714 7.7233
15 6 3.0389 -2.1361 2.4705
16 6 2.8040 -1.8026 1.1862
17 6 3.4943 -2.7783 0.2591
18 6 3.8287 -4.0015 1.1415
19 6 3.9085 -3.3676 2.5486
20 1 3.5209 -4.0584 3.2975
21 8 5.2558 -3.0055 2.8579
22 1 -0.3634 0.5139 -0.8899
23 1 -0.3633 -1.0276 -0.0005
24 1 -0.3633 0.5138 0.8900
25 1 1.8932 -0.5137 -0.8901
26 1 3.1300 1.4425 0.0005
27 1 1.6767 1.9564 -0.8899
28 1 1.6767 1.9562 0.8901
29 1 0.4566 1.5167 5.0187
30 1 2.8258 -3.0680 -0.5516
31 1 4.4069 -2.3379 -0.1426
32 1 4.7862 -4.4374 0.8561
33 1 3.0338 -4.7456 1.0936
34 1 5.8651 -3.7553 2.8986
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000261058199.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:28:31
Heat of formation + Delta-G solvation = 3.436374 kcal
Electronic energy + Delta-G solvation = -17222.744276 eV
Core-core repulsion = 14542.294987 eV
Total energy + Delta-G solvation = -2680.449289 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-42.62228 -38.67079 -36.39690 -35.33062 -34.55708 -31.13413 -28.86992 -28.17060
-27.93467 -26.92752 -23.01599 -22.44445 -20.38902 -20.28514 -18.27577 -17.83485
-17.43353 -16.35974 -16.31519 -15.56431 -15.34001 -14.83185 -14.43491 -14.00010
-13.72998 -13.56760 -13.18963 -13.06452 -12.95264 -12.86253 -12.69618 -12.53540
-12.24764 -12.07773 -12.00841 -11.76129 -11.49594 -11.08530 -10.71512 -10.22465
-9.29776 -8.96955 -8.27461 -6.18289 1.37540 1.38346 1.52701 1.66577
2.26027 2.34894 2.38274 3.53321 3.58715 3.78876 3.92622 4.00697
4.08928 4.16506 4.25489 4.44634 4.66871 4.67683 4.74078 4.83055
4.84347 4.85585 4.91644 5.15157 5.21669 5.27124 5.35858 5.37527
5.59250 5.69942 6.02881 6.46106 6.90239 7.01830 7.19289 7.28909
8.42392 8.72655
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.018683 B = 0.011211 C = 0.007553
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1498.291342 B = 2497.001716 C = 3706.219213
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C 0.145 3.855
3 C -0.146 4.146
4 N -0.313 5.313
5 N -0.345 5.345
6 C 0.169 3.831
7 C -0.483 4.483
8 H 0.067 0.933
9 C 0.023 3.977
10 N -0.822 5.822
11 Si 0.980 3.020
12 H -0.269 1.269
13 H -0.271 1.271
14 H -0.260 1.260
15 C -0.321 4.321
16 C -0.032 4.032
17 C -0.021 4.021
18 C -0.126 4.126
19 C 0.186 3.814
20 H 0.041 0.959
21 O -0.582 6.582
22 H 0.106 0.894
23 H 0.048 0.952
24 H 0.035 0.965
25 H 0.120 0.880
26 H 0.044 0.956
27 H 0.107 0.893
28 H 0.035 0.965
29 H 0.269 0.731
30 H 0.090 0.910
31 H 0.082 0.918
32 H 0.113 0.887
33 H 0.090 0.910
34 H 0.385 0.615
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.828 -6.217 -10.607 12.616
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C 0.044 3.956
3 C -0.204 4.204
4 N -0.097 5.097
5 N -0.176 5.176
6 C 0.019 3.981
7 C -0.522 4.522
8 H 0.085 0.915
9 C -0.190 4.190
10 N -0.452 5.452
11 Si 0.802 3.198
12 H -0.194 1.194
13 H -0.195 1.195
14 H -0.184 1.184
15 C -0.333 4.333
16 C -0.161 4.161
17 C -0.060 4.060
18 C -0.163 4.163
19 C 0.127 3.873
20 H 0.059 0.941
21 O -0.390 6.390
22 H 0.124 0.876
23 H 0.067 0.933
24 H 0.054 0.946
25 H 0.137 0.863
26 H 0.063 0.937
27 H 0.125 0.875
28 H 0.054 0.946
29 H 0.079 0.921
30 H 0.109 0.891
31 H 0.101 0.899
32 H 0.131 0.869
33 H 0.109 0.891
34 H 0.234 0.766
Dipole moment (debyes) X Y Z Total
from point charges 1.667 -4.366 -10.853 11.817
hybrid contribution 0.508 -0.737 1.374 1.640
sum 2.176 -5.103 -9.479 10.983
Atomic orbital electron populations
1.21984 0.93458 1.01925 1.02908 1.21500 0.95825 0.94005 0.84246
1.21994 1.00461 0.95001 1.02936 1.45665 1.38005 1.19927 1.06075
1.74661 1.29300 1.26128 0.87549 1.19249 0.94071 0.90502 0.94241
1.18791 1.31273 1.12509 0.89613 0.91486 1.26632 0.93545 0.94144
1.04715 1.70093 1.25339 1.11728 1.38077 0.85250 0.78149 0.79227
0.77174 1.19409 1.19527 1.18358 1.21200 1.11811 1.05717 0.94527
1.22723 1.00524 0.93893 0.98929 1.20528 0.98528 0.91431 0.95471
1.23002 1.04116 0.96397 0.92827 1.20229 0.80194 0.91196 0.95686
0.94123 1.86686 1.19743 1.38753 1.93840 0.87582 0.93291 0.94560
0.86264 0.93728 0.87474 0.94566 0.92092 0.89113 0.89945 0.86900
0.89117 0.76640
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -4.82 9.36 71.98 0.67 -4.15 16
2 C 0.15 5.20 3.60 44.99 0.16 5.36 16
3 C -0.15 -4.99 9.37 71.98 0.67 -4.31 16
4 N -0.31 -15.18 3.07 -313.22 -0.96 -16.14 16
5 N -0.34 -20.56 9.91 -51.66 -0.51 -21.08 16
6 C 0.17 10.52 6.78 40.75 0.28 10.80 16
7 C -0.48 -30.46 9.42 23.45 0.22 -30.24 16
8 H 0.07 4.12 7.84 -2.91 -0.02 4.09 16
9 C 0.02 1.35 5.49 85.22 0.47 1.82 16
10 N -0.82 -50.55 11.98 21.81 0.26 -50.29 16
11 Si 0.98 44.71 29.56 68.60 2.03 46.74 16
12 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16
13 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16
14 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16
15 C -0.32 -16.80 6.66 -19.62 -0.13 -16.93 16
16 C -0.03 -1.45 7.52 41.27 0.31 -1.14 16
17 C -0.02 -0.63 6.78 30.53 0.21 -0.42 16
18 C -0.13 -3.44 6.87 31.62 0.22 -3.22 16
19 C 0.19 7.44 4.23 30.45 0.13 7.57 16
20 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16
21 O -0.58 -22.60 13.36 -148.98 -1.99 -24.59 16
22 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16
23 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16
24 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16
25 H 0.12 3.31 8.04 -2.39 -0.02 3.29 16
26 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16
27 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16
28 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16
29 H 0.27 15.20 8.30 -92.71 -0.77 14.43 16
30 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16
31 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16
32 H 0.11 2.21 8.11 -2.38 -0.02 2.19 16
33 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16
34 H 0.38 9.55 9.12 -74.06 -0.68 8.87 16
Total: -1.00 -83.18 288.11 2.45 -80.73
By element:
Atomic # 1 Polarization: 19.08 SS G_CDS: 0.42 Total: 19.50 kcal
Atomic # 6 Polarization: -38.08 SS G_CDS: 3.21 Total: -34.87 kcal
Atomic # 7 Polarization: -86.29 SS G_CDS: -1.21 Total: -87.51 kcal
Atomic # 8 Polarization: -22.60 SS G_CDS: -1.99 Total: -24.59 kcal
Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal
Total: -83.18 2.45 -80.73 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261058199.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 84.165 kcal
(2) G-P(sol) polarization free energy of solvation -83.183 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.983 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.454 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.729 kcal
(6) G-S(sol) free energy of system = (1) + (5) 3.436 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds