Wall clock time and date at job start Mon Mar 30 2020 03:12:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42902 * 1
3 3 C 1.35502 * 117.00116 * 2 1
4 4 C 1.39893 * 120.43989 * 174.80398 * 3 2 1
5 5 C 1.38700 * 118.62380 * 179.97438 * 4 3 2
6 6 C 1.50701 * 120.33196 * 179.97438 * 5 4 3
7 7 C 1.52998 * 109.47484 * 75.00027 * 6 5 4
8 8 C 1.53010 * 109.46975 * 194.99773 * 6 5 4
9 9 C 1.52998 * 109.47268 * 314.99209 * 6 5 4
10 10 N 1.32051 * 119.33606 * 0.25192 * 5 4 3
11 11 C 1.33423 * 120.83392 * 359.49124 * 10 5 4
12 12 C 1.41579 * 119.25454 * 180.26456 * 11 10 5
13 13 H 1.08004 * 119.99498 * 7.72589 * 12 11 10
14 14 C 1.40050 * 120.00379 * 187.72257 * 12 11 10
15 15 N 1.30695 * 119.99938 * 7.45044 * 14 12 11
16 16 Si 1.86793 * 120.00339 * 187.44570 * 14 12 11
17 17 H 1.48503 * 109.47052 * 84.99779 * 16 14 12
18 18 H 1.48506 * 109.47570 * 204.99583 * 16 14 12
19 19 H 1.48496 * 109.47546 * 324.99726 * 16 14 12
20 20 N 1.32363 * 120.44015 * 354.78162 * 3 2 1
21 21 H 1.08993 * 109.47363 * 304.73602 * 1 2 3
22 22 H 1.08997 * 109.47095 * 64.74178 * 1 2 3
23 23 H 1.09006 * 109.46778 * 184.74022 * 1 2 3
24 24 H 1.08001 * 120.69214 * 0.02562 * 4 3 2
25 25 H 1.09001 * 109.46931 * 59.99691 * 7 6 5
26 26 H 1.08998 * 109.47518 * 179.97438 * 7 6 5
27 27 H 1.09006 * 109.46879 * 299.99756 * 7 6 5
28 28 H 1.09002 * 109.46629 * 60.00024 * 8 6 5
29 29 H 1.08998 * 109.47094 * 180.02562 * 8 6 5
30 30 H 1.08994 * 109.46910 * 300.00062 * 8 6 5
31 31 H 1.09006 * 109.46702 * 60.00485 * 9 6 5
32 32 H 1.08998 * 109.47114 * 180.02562 * 9 6 5
33 33 H 1.08993 * 109.47581 * 300.00979 * 9 6 5
34 34 H 0.96996 * 120.00696 * 179.97438 * 15 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0442 1.2073 0.0000
4 6 3.4362 1.2935 0.1092
5 6 4.0266 2.5485 0.1047
6 6 5.5229 2.6861 0.2208
7 6 6.1751 2.3031 -1.1091
8 6 5.8767 4.1347 0.5638
9 6 6.0359 1.7606 1.3258
10 7 3.2641 3.6219 0.0032
11 6 1.9389 3.5115 -0.1047
12 6 1.1538 4.6843 -0.2173
13 1 1.6324 5.6446 -0.3408
14 6 -0.2432 4.5993 -0.1686
15 7 -0.8189 3.4634 0.1254
16 14 -1.2839 6.1093 -0.5238
17 1 -1.4850 6.2382 -1.9895
18 1 -2.6019 5.9710 0.1463
19 1 -0.5923 7.3191 -0.0108
20 7 1.3361 2.3208 -0.1038
21 1 -0.3634 0.5855 0.8445
22 1 -0.3633 0.4385 -0.9294
23 1 -0.3633 -1.0242 0.0849
24 1 4.0388 0.4012 0.1945
25 1 5.8095 2.9625 -1.8963
26 1 7.2572 2.4030 -1.0253
27 1 5.9230 1.2711 -1.3535
28 1 5.4121 4.4076 1.5113
29 1 6.9589 4.2343 0.6473
30 1 5.5112 4.7941 -0.2233
31 1 5.7839 0.7286 1.0815
32 1 7.1181 1.8605 1.4101
33 1 5.5713 2.0334 2.2732
34 1 -1.7865 3.4045 0.1596
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000261147546.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:12:20
Heat of formation + Delta-G solvation = -10.650310 kcal
Electronic energy + Delta-G solvation = -17046.652725 eV
Core-core repulsion = 14365.592592 eV
Total energy + Delta-G solvation = -2681.060133 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-39.46851 -37.46814 -35.93954 -33.47218 -30.80544 -29.93573 -27.12084 -26.80903
-26.73382 -25.53635 -22.60084 -21.59395 -19.30366 -17.16810 -16.82846 -15.65743
-14.98616 -14.85854 -14.34834 -13.89470 -13.63592 -13.57328 -13.05468 -12.79911
-12.46483 -11.82390 -11.73863 -11.43473 -11.29724 -11.16600 -11.07351 -10.72830
-10.57557 -10.55149 -10.37086 -10.30248 -10.18284 -9.34459 -8.87546 -8.37064
-7.67468 -7.43566 -6.62621 -4.73166 2.64273 2.96072 3.04292 3.08157
3.13863 3.87334 4.20714 4.62814 5.16182 5.39310 5.47318 5.82776
5.92548 6.00188 6.01936 6.05376 6.10075 6.21674 6.26150 6.30219
6.41082 6.41914 6.46652 6.58665 6.68358 6.71561 6.82634 7.01190
7.05313 7.13505 7.51932 8.03601 8.34892 8.55613 8.66566 9.12696
10.11205 10.27957
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.023082 B = 0.009254 C = 0.006943
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1212.772144 B = 3024.863147 C = 4031.721065
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.053 3.947
2 O -0.327 6.327
3 C 0.356 3.644
4 C -0.372 4.372
5 C 0.219 3.781
6 C -0.015 4.015
7 C -0.130 4.130
8 C -0.120 4.120
9 C -0.133 4.133
10 N -0.599 5.599
11 C 0.425 3.575
12 C -0.404 4.404
13 H 0.094 0.906
14 C 0.072 3.928
15 N -0.719 5.719
16 Si 0.918 3.082
17 H -0.267 1.267
18 H -0.277 1.277
19 H -0.260 1.260
20 N -0.560 5.560
21 H 0.061 0.939
22 H 0.052 0.948
23 H 0.072 0.928
24 H 0.109 0.891
25 H 0.054 0.946
26 H 0.053 0.947
27 H 0.054 0.946
28 H 0.053 0.947
29 H 0.040 0.960
30 H 0.064 0.936
31 H 0.057 0.943
32 H 0.052 0.948
33 H 0.053 0.947
34 H 0.274 0.726
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.728 -2.084 0.128 5.168
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.043 4.043
2 O -0.234 6.234
3 C 0.163 3.837
4 C -0.400 4.400
5 C 0.067 3.933
6 C -0.016 4.016
7 C -0.188 4.188
8 C -0.177 4.177
9 C -0.191 4.191
10 N -0.321 5.321
11 C 0.187 3.813
12 C -0.439 4.439
13 H 0.112 0.888
14 C -0.154 4.154
15 N -0.341 5.341
16 Si 0.741 3.259
17 H -0.192 1.192
18 H -0.202 1.202
19 H -0.184 1.184
20 N -0.293 5.293
21 H 0.080 0.920
22 H 0.071 0.929
23 H 0.090 0.910
24 H 0.127 0.873
25 H 0.074 0.926
26 H 0.072 0.928
27 H 0.073 0.927
28 H 0.072 0.928
29 H 0.059 0.941
30 H 0.083 0.917
31 H 0.077 0.923
32 H 0.071 0.929
33 H 0.072 0.928
34 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges 3.971 -1.613 0.100 4.287
hybrid contribution -0.438 -0.249 -0.086 0.511
sum 3.533 -1.861 0.014 3.993
Atomic orbital electron populations
1.22569 0.78521 1.00138 1.03069 1.86046 1.22081 1.26718 1.88519
1.20183 0.88969 0.85665 0.88883 1.20773 0.92329 0.98467 1.28440
1.20680 0.94298 0.88389 0.89928 1.19348 0.90078 0.96560 0.95606
1.21782 0.99214 1.01484 0.96361 1.21595 0.98522 0.95067 1.02542
1.21842 0.99714 0.99417 0.98128 1.68499 1.06714 1.31469 1.25386
1.19578 0.84990 0.89828 0.86876 1.19292 0.89867 0.92892 1.41859
0.88838 1.26045 0.98682 0.97423 0.93292 1.70046 1.10992 1.25157
1.27951 0.86179 0.78658 0.81534 0.79494 1.19209 1.20181 1.18390
1.68933 1.37608 0.97291 1.25489 0.92038 0.92941 0.91003 0.87303
0.92644 0.92793 0.92652 0.92796 0.94085 0.91661 0.92348 0.92903
0.92801 0.91464
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.05 1.07 10.42 101.05 1.05 2.12 16
2 O -0.33 -7.63 10.49 -18.20 -0.19 -7.82 16
3 C 0.36 9.18 7.53 -16.70 -0.13 9.06 16
4 C -0.37 -8.83 9.19 -38.79 -0.36 -9.19 16
5 C 0.22 5.08 5.57 -82.33 -0.46 4.62 16
6 C -0.01 -0.27 0.88 -155.66 -0.14 -0.41 16
7 C -0.13 -2.07 8.41 37.16 0.31 -1.75 16
8 C -0.12 -2.07 7.83 37.16 0.29 -1.78 16
9 C -0.13 -2.08 8.10 37.16 0.30 -1.78 16
10 N -0.60 -15.69 9.10 -8.95 -0.08 -15.77 16
11 C 0.42 11.98 7.34 -158.33 -1.16 10.82 16
12 C -0.40 -10.96 9.37 -37.63 -0.35 -11.31 16
13 H 0.09 2.44 7.86 -52.48 -0.41 2.03 16
14 C 0.07 1.80 5.47 -17.36 -0.09 1.70 16
15 N -0.72 -18.44 11.54 55.55 0.64 -17.80 16
16 Si 0.92 18.41 29.57 -169.99 -5.03 13.38 16
17 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16
18 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16
19 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16
20 N -0.56 -15.58 6.92 -12.70 -0.09 -15.67 16
21 H 0.06 1.33 8.07 -51.93 -0.42 0.91 16
22 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16
23 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16
24 H 0.11 2.33 6.83 -52.49 -0.36 1.97 16
25 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16
26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16
27 H 0.05 0.87 8.12 -51.93 -0.42 0.44 16
28 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16
29 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16
30 H 0.06 1.21 7.88 -51.93 -0.41 0.80 16
31 H 0.06 0.90 6.78 -51.93 -0.35 0.54 16
32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16
33 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16
34 H 0.27 6.33 8.29 -40.82 -0.34 6.00 16
LS Contribution 288.01 15.07 4.34 4.34
Total: -1.00 -29.55 288.01 -6.02 -35.58
By element:
Atomic # 1 Polarization: 6.55 SS G_CDS: -4.89 Total: 1.66 kcal
Atomic # 6 Polarization: 2.84 SS G_CDS: -0.73 Total: 2.11 kcal
Atomic # 7 Polarization: -49.71 SS G_CDS: 0.47 Total: -49.24 kcal
Atomic # 8 Polarization: -7.63 SS G_CDS: -0.19 Total: -7.82 kcal
Atomic # 14 Polarization: 18.41 SS G_CDS: -5.03 Total: 13.38 kcal
Total LS contribution 4.34 Total: 4.34 kcal
Total: -29.55 -6.02 -35.58 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261147546.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 24.927 kcal
(2) G-P(sol) polarization free energy of solvation -29.555 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.627 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.023 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.578 kcal
(6) G-S(sol) free energy of system = (1) + (5) -10.650 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds