Wall clock time and date at job start Mon Mar 30 2020 03:12:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42902 * 1
3 3 C 1.35502 * 117.00116 * 2 1
4 4 C 1.39893 * 120.43989 * 174.80398 * 3 2 1
5 5 C 1.38700 * 118.62380 * 179.97438 * 4 3 2
6 6 C 1.50701 * 120.33196 * 179.97438 * 5 4 3
7 7 C 1.52998 * 109.47484 * 75.00027 * 6 5 4
8 8 C 1.53010 * 109.46975 * 194.99773 * 6 5 4
9 9 C 1.52998 * 109.47268 * 314.99209 * 6 5 4
10 10 N 1.32051 * 119.33606 * 0.25192 * 5 4 3
11 11 C 1.33423 * 120.83392 * 359.49124 * 10 5 4
12 12 C 1.41579 * 119.25454 * 180.26456 * 11 10 5
13 13 H 1.08004 * 119.99498 * 7.72589 * 12 11 10
14 14 C 1.40050 * 120.00379 * 187.72257 * 12 11 10
15 15 N 1.30695 * 119.99938 * 7.45044 * 14 12 11
16 16 Si 1.86793 * 120.00339 * 187.44570 * 14 12 11
17 17 H 1.48503 * 109.47052 * 84.99779 * 16 14 12
18 18 H 1.48506 * 109.47570 * 204.99583 * 16 14 12
19 19 H 1.48496 * 109.47546 * 324.99726 * 16 14 12
20 20 N 1.32363 * 120.44015 * 354.78162 * 3 2 1
21 21 H 1.08993 * 109.47363 * 304.73602 * 1 2 3
22 22 H 1.08997 * 109.47095 * 64.74178 * 1 2 3
23 23 H 1.09006 * 109.46778 * 184.74022 * 1 2 3
24 24 H 1.08001 * 120.69214 * 0.02562 * 4 3 2
25 25 H 1.09001 * 109.46931 * 59.99691 * 7 6 5
26 26 H 1.08998 * 109.47518 * 179.97438 * 7 6 5
27 27 H 1.09006 * 109.46879 * 299.99756 * 7 6 5
28 28 H 1.09002 * 109.46629 * 60.00024 * 8 6 5
29 29 H 1.08998 * 109.47094 * 180.02562 * 8 6 5
30 30 H 1.08994 * 109.46910 * 300.00062 * 8 6 5
31 31 H 1.09006 * 109.46702 * 60.00485 * 9 6 5
32 32 H 1.08998 * 109.47114 * 180.02562 * 9 6 5
33 33 H 1.08993 * 109.47581 * 300.00979 * 9 6 5
34 34 H 0.96996 * 120.00696 * 179.97438 * 15 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0442 1.2073 0.0000
4 6 3.4362 1.2935 0.1092
5 6 4.0266 2.5485 0.1047
6 6 5.5229 2.6861 0.2208
7 6 6.1751 2.3031 -1.1091
8 6 5.8767 4.1347 0.5638
9 6 6.0359 1.7606 1.3258
10 7 3.2641 3.6219 0.0032
11 6 1.9389 3.5115 -0.1047
12 6 1.1538 4.6843 -0.2173
13 1 1.6324 5.6446 -0.3408
14 6 -0.2432 4.5993 -0.1686
15 7 -0.8189 3.4634 0.1254
16 14 -1.2839 6.1093 -0.5238
17 1 -1.4850 6.2382 -1.9895
18 1 -2.6019 5.9710 0.1463
19 1 -0.5923 7.3191 -0.0108
20 7 1.3361 2.3208 -0.1038
21 1 -0.3634 0.5855 0.8445
22 1 -0.3633 0.4385 -0.9294
23 1 -0.3633 -1.0242 0.0849
24 1 4.0388 0.4012 0.1945
25 1 5.8095 2.9625 -1.8963
26 1 7.2572 2.4030 -1.0253
27 1 5.9230 1.2711 -1.3535
28 1 5.4121 4.4076 1.5113
29 1 6.9589 4.2343 0.6473
30 1 5.5112 4.7941 -0.2233
31 1 5.7839 0.7286 1.0815
32 1 7.1181 1.8605 1.4101
33 1 5.5713 2.0334 2.2732
34 1 -1.7865 3.4045 0.1596
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000261147546.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:12:20
Heat of formation + Delta-G solvation = -29.547889 kcal
Electronic energy + Delta-G solvation = -17047.472185 eV
Core-core repulsion = 14365.592592 eV
Total energy + Delta-G solvation = -2681.879594 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-41.33669 -39.21477 -37.58442 -35.34865 -32.72457 -31.80354 -28.88655 -28.30526
-28.05232 -27.24320 -24.36517 -23.52745 -21.00137 -18.97137 -18.67564 -17.47649
-16.78115 -16.68189 -16.00549 -15.54058 -15.24514 -15.15978 -14.65965 -14.39787
-14.23263 -13.35848 -13.08592 -12.92864 -12.85197 -12.78154 -12.58898 -12.48780
-12.24571 -12.09613 -11.84490 -11.78446 -11.74782 -11.14995 -10.76774 -10.30409
-9.59761 -9.40649 -8.51473 -6.75438 0.74643 1.05859 1.39280 1.50621
1.54022 2.19074 2.42836 2.73025 3.61950 3.82485 4.01491 4.11678
4.24255 4.42325 4.51317 4.54709 4.65585 4.74555 4.86848 4.90008
4.92405 4.97701 5.05651 5.08383 5.10511 5.14026 5.26587 5.31391
5.52117 5.63814 5.72889 6.02937 6.38849 6.59900 6.70630 7.18788
8.19691 8.35341
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.023082 B = 0.009254 C = 0.006943
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1212.772144 B = 3024.863147 C = 4031.721065
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.058 3.942
2 O -0.328 6.328
3 C 0.332 3.668
4 C -0.377 4.377
5 C 0.212 3.788
6 C -0.019 4.019
7 C -0.124 4.124
8 C -0.114 4.114
9 C -0.127 4.127
10 N -0.619 5.619
11 C 0.392 3.608
12 C -0.436 4.436
13 H 0.090 0.910
14 C 0.030 3.970
15 N -0.747 5.747
16 Si 0.998 3.002
17 H -0.262 1.262
18 H -0.262 1.262
19 H -0.256 1.256
20 N -0.584 5.584
21 H 0.041 0.959
22 H 0.037 0.963
23 H 0.122 0.878
24 H 0.132 0.868
25 H 0.037 0.963
26 H 0.092 0.908
27 H 0.055 0.945
28 H 0.034 0.966
29 H 0.080 0.920
30 H 0.043 0.957
31 H 0.060 0.940
32 H 0.090 0.910
33 H 0.039 0.961
34 H 0.284 0.716
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.649 -2.282 0.116 6.093
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.038 4.038
2 O -0.235 6.235
3 C 0.141 3.859
4 C -0.404 4.404
5 C 0.061 3.939
6 C -0.020 4.020
7 C -0.182 4.182
8 C -0.171 4.171
9 C -0.185 4.185
10 N -0.342 5.342
11 C 0.155 3.845
12 C -0.472 4.472
13 H 0.109 0.891
14 C -0.194 4.194
15 N -0.369 5.369
16 Si 0.817 3.183
17 H -0.187 1.187
18 H -0.187 1.187
19 H -0.180 1.180
20 N -0.318 5.318
21 H 0.059 0.941
22 H 0.055 0.945
23 H 0.140 0.860
24 H 0.150 0.850
25 H 0.056 0.944
26 H 0.111 0.889
27 H 0.074 0.926
28 H 0.053 0.947
29 H 0.099 0.901
30 H 0.062 0.938
31 H 0.079 0.921
32 H 0.108 0.892
33 H 0.058 0.942
34 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges 4.912 -1.851 0.095 5.250
hybrid contribution -0.684 -0.275 -0.065 0.740
sum 4.228 -2.127 0.030 4.733
Atomic orbital electron populations
1.22697 0.76974 1.02734 1.01345 1.86044 1.23559 1.25522 1.88334
1.20662 0.90148 0.86001 0.89130 1.21119 0.91867 0.99691 1.27718
1.21629 0.96898 0.87587 0.87802 1.19599 0.86637 0.97820 0.97971
1.21752 1.01301 1.00947 0.94217 1.21542 1.00822 0.94110 1.00635
1.21811 1.01862 0.98609 0.96192 1.68582 1.06291 1.32828 1.26477
1.20056 0.86191 0.90531 0.87751 1.19616 0.91409 0.92674 1.43464
0.89142 1.26986 0.99053 1.00918 0.92465 1.70103 1.11898 1.27225
1.27653 0.84989 0.76896 0.76997 0.79389 1.18716 1.18659 1.18007
1.68890 1.38414 0.97711 1.26811 0.94051 0.94456 0.86009 0.84972
0.94378 0.88932 0.92583 0.94683 0.90078 0.93823 0.92140 0.89160
0.94160 0.90494
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.06 2.32 10.42 113.37 1.18 3.50 16
2 O -0.33 -15.34 10.49 -88.03 -0.92 -16.26 16
3 C 0.33 17.50 7.53 85.01 0.64 18.14 16
4 C -0.38 -17.92 9.19 22.78 0.21 -17.71 16
5 C 0.21 9.90 5.57 42.64 0.24 10.14 16
6 C -0.02 -0.67 0.88 -52.93 -0.05 -0.71 16
7 C -0.12 -3.63 8.41 71.98 0.61 -3.02 16
8 C -0.11 -3.77 7.83 71.99 0.56 -3.21 16
9 C -0.13 -3.61 8.10 71.98 0.58 -3.02 16
10 N -0.62 -33.49 9.10 -182.22 -1.66 -35.15 16
11 C 0.39 23.02 7.34 135.16 0.99 24.01 16
12 C -0.44 -24.55 9.37 23.53 0.22 -24.33 16
13 H 0.09 4.93 7.86 -2.91 -0.02 4.90 16
14 C 0.03 1.50 5.47 85.30 0.47 1.97 16
15 N -0.75 -39.11 11.54 21.84 0.25 -38.86 16
16 Si 1.00 37.93 29.57 68.60 2.03 39.96 16
17 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16
18 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16
19 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16
20 N -0.58 -33.64 6.92 -307.00 -2.12 -35.76 16
21 H 0.04 1.82 8.07 -2.39 -0.02 1.80 16
22 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16
23 H 0.12 3.62 8.14 -2.38 -0.02 3.60 16
24 H 0.13 5.51 6.83 -2.91 -0.02 5.49 16
25 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16
26 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16
27 H 0.06 1.62 8.12 -2.38 -0.02 1.60 16
28 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16
29 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16
30 H 0.04 1.61 7.88 -2.39 -0.02 1.59 16
31 H 0.06 1.68 6.78 -2.38 -0.02 1.67 16
32 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16
33 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16
34 H 0.28 13.26 8.29 -92.71 -0.77 12.49 16
Total: -1.00 -66.78 288.01 4.31 -62.47
By element:
Atomic # 1 Polarization: 16.78 SS G_CDS: 1.08 Total: 17.86 kcal
Atomic # 6 Polarization: 0.09 SS G_CDS: 5.65 Total: 5.74 kcal
Atomic # 7 Polarization: -106.24 SS G_CDS: -3.53 Total: -109.77 kcal
Atomic # 8 Polarization: -15.34 SS G_CDS: -0.92 Total: -16.26 kcal
Atomic # 14 Polarization: 37.93 SS G_CDS: 2.03 Total: 39.96 kcal
Total: -66.78 4.31 -62.47 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261147546.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 32.924 kcal
(2) G-P(sol) polarization free energy of solvation -66.779 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.855 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.307 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.472 kcal
(6) G-S(sol) free energy of system = (1) + (5) -29.548 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds