Wall clock time and date at job start Mon Mar 30 2020 03:13:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42905 * 1
3 3 C 1.35268 * 116.99739 * 2 1
4 4 N 1.32564 * 120.68548 * 359.97438 * 3 2 1
5 5 C 1.31869 * 120.98724 * 179.97438 * 4 3 2
6 6 C 1.50703 * 118.76864 * 179.97438 * 5 4 3
7 7 C 1.53008 * 109.47256 * 89.99940 * 6 5 4
8 8 C 1.53003 * 109.46663 * 294.99978 * 7 6 5
9 9 C 1.52998 * 109.47033 * 175.00332 * 7 6 5
10 10 N 1.32035 * 122.46253 * 0.25791 * 5 4 3
11 11 C 1.32010 * 121.25224 * 359.47320 * 10 5 4
12 12 C 1.40926 * 118.83133 * 0.51217 * 11 10 5
13 13 C 1.41174 * 121.08035 * 179.73180 * 12 11 10
14 14 H 1.08001 * 119.99662 * 156.22559 * 13 12 11
15 15 C 1.39955 * 120.00065 * 336.21359 * 13 12 11
16 16 N 1.30847 * 120.00297 * 342.86924 * 15 13 12
17 17 Si 1.86806 * 119.99949 * 162.86967 * 15 13 12
18 18 H 1.48496 * 109.47230 * 94.70652 * 17 15 13
19 19 H 1.48494 * 109.47166 * 214.70573 * 17 15 13
20 20 H 1.48507 * 109.46850 * 334.70810 * 17 15 13
21 21 H 1.08997 * 109.47652 * 300.00107 * 1 2 3
22 22 H 1.08998 * 109.46897 * 60.00648 * 1 2 3
23 23 H 1.09007 * 109.46630 * 180.02562 * 1 2 3
24 24 H 1.09007 * 109.47244 * 330.00272 * 6 5 4
25 25 H 1.08995 * 109.47430 * 209.99654 * 6 5 4
26 26 H 1.08999 * 109.46767 * 55.00028 * 7 6 5
27 27 H 1.08999 * 109.47570 * 299.99559 * 8 7 6
28 28 H 1.09009 * 109.46330 * 179.97438 * 8 7 6
29 29 H 1.09002 * 109.47169 * 60.00267 * 8 7 6
30 30 H 1.09009 * 109.46877 * 180.02562 * 9 7 6
31 31 H 1.09002 * 109.46855 * 299.99321 * 9 7 6
32 32 H 1.08990 * 109.47552 * 60.00057 * 9 7 6
33 33 H 1.07994 * 120.59082 * 180.23684 * 11 10 5
34 34 H 0.96998 * 120.00434 * 180.02562 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0431 1.2053 0.0000
4 7 1.3344 2.3256 -0.0005
5 6 1.9268 3.5037 0.0000
6 6 1.0725 4.7452 -0.0012
7 6 0.7816 5.1656 1.4409
8 6 -0.0667 4.0910 2.1241
9 6 0.0206 6.4929 1.4416
10 7 3.2405 3.6364 -0.0040
11 6 4.0353 2.5824 0.0016
12 6 3.4588 1.2965 0.0010
13 6 4.2639 0.1368 0.0012
14 1 3.8686 -0.7950 0.3779
15 6 5.5743 0.1946 -0.4869
16 7 5.9488 1.1979 -1.2388
17 14 6.7888 -1.1606 -0.0649
18 1 6.7991 -2.1722 -1.1520
19 1 8.1473 -0.5793 0.0832
20 1 6.3855 -1.8075 1.2095
21 1 -0.3634 0.5138 0.8899
22 1 -0.3633 0.5137 -0.8900
23 1 -0.3633 -1.0278 0.0005
24 1 0.1339 4.5398 -0.5161
25 1 1.6002 5.5489 -0.5145
26 1 1.7208 5.2849 1.9810
27 1 -1.0060 3.9717 1.5840
28 1 -0.2736 4.3904 3.1516
29 1 0.4754 3.1454 2.1236
30 1 -0.1862 6.7926 2.4691
31 1 0.6250 7.2584 0.9549
32 1 -0.9185 6.3736 0.9015
33 1 5.1085 2.7033 0.0021
34 1 6.8569 1.2378 -1.5774
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000261157903.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:13:13
Heat of formation + Delta-G solvation = -23.231374 kcal
Electronic energy + Delta-G solvation = -16818.041503 eV
Core-core repulsion = 14136.435814 eV
Total energy + Delta-G solvation = -2681.605689 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-39.49283 -37.21893 -35.68656 -34.11732 -31.42753 -30.61098 -27.74624 -26.78135
-26.57718 -24.45148 -22.14499 -21.40970 -19.56551 -17.55312 -16.96248 -16.49349
-15.14154 -14.91674 -14.49486 -13.85605 -13.65927 -13.52072 -13.46522 -12.47047
-12.41267 -12.00058 -11.91110 -11.60321 -11.38928 -11.28186 -11.10843 -10.96661
-10.77326 -10.60666 -10.46135 -10.21789 -10.17534 -9.50769 -9.17471 -8.68022
-7.90859 -7.57371 -6.96635 -4.46202 2.49651 2.83669 3.00479 3.03359
3.10004 3.81544 4.25206 4.51179 5.17378 5.33927 5.35483 5.55323
5.68445 5.83226 5.88387 5.95688 5.97132 6.09961 6.14058 6.18449
6.23905 6.38291 6.50024 6.55085 6.61946 6.81311 6.85586 6.96891
6.98069 7.21056 7.75846 8.10295 8.24570 8.51617 8.53310 8.91888
9.81182 9.97600
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.030592 B = 0.007372 C = 0.006328
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 915.062960 B = 3797.003819 C = 4423.952471
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.047 3.953
2 O -0.303 6.303
3 C 0.231 3.769
4 N -0.544 5.544
5 C 0.191 3.809
6 C -0.018 4.018
7 C -0.089 4.089
8 C -0.138 4.138
9 C -0.143 4.143
10 N -0.513 5.513
11 C 0.074 3.926
12 C 0.014 3.986
13 C -0.422 4.422
14 H 0.089 0.911
15 C 0.070 3.930
16 N -0.788 5.788
17 Si 0.918 3.082
18 H -0.268 1.268
19 H -0.273 1.273
20 H -0.258 1.258
21 H 0.044 0.956
22 H 0.045 0.955
23 H 0.079 0.921
24 H 0.065 0.935
25 H 0.069 0.931
26 H 0.068 0.932
27 H 0.049 0.951
28 H 0.040 0.960
29 H 0.060 0.940
30 H 0.049 0.951
31 H 0.052 0.948
32 H 0.051 0.949
33 H 0.164 0.836
34 H 0.287 0.713
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.473 2.132 2.975 6.584
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.049 4.049
2 O -0.210 6.210
3 C 0.041 3.959
4 N -0.272 5.272
5 C -0.072 4.072
6 C -0.058 4.058
7 C -0.108 4.108
8 C -0.195 4.195
9 C -0.200 4.200
10 N -0.228 5.228
11 C -0.094 4.094
12 C 0.007 3.993
13 C -0.452 4.452
14 H 0.107 0.893
15 C -0.149 4.149
16 N -0.413 5.413
17 Si 0.742 3.258
18 H -0.193 1.193
19 H -0.198 1.198
20 H -0.182 1.182
21 H 0.063 0.937
22 H 0.064 0.936
23 H 0.097 0.903
24 H 0.084 0.916
25 H 0.087 0.913
26 H 0.086 0.914
27 H 0.068 0.932
28 H 0.059 0.941
29 H 0.079 0.921
30 H 0.068 0.932
31 H 0.071 0.929
32 H 0.070 0.930
33 H 0.181 0.819
34 H 0.098 0.902
Dipole moment (debyes) X Y Z Total
from point charges -5.758 2.777 2.819 6.986
hybrid contribution 0.869 -1.345 0.011 1.601
sum -4.889 1.432 2.830 5.828
Atomic orbital electron populations
1.22544 0.80286 1.00940 1.01152 1.86107 1.20037 1.25538 1.89287
1.20239 0.89452 0.83520 1.02683 1.67141 1.42242 0.98785 1.19070
1.21464 0.87978 0.90392 1.07348 1.19956 0.97235 0.92689 0.95899
1.21046 0.98804 0.94402 0.96552 1.21762 0.99742 0.99481 0.98512
1.21824 1.00072 0.97135 1.00985 1.67584 1.05233 1.35928 1.14089
1.23142 0.99356 0.85821 1.01033 1.18498 0.88595 0.96333 0.95848
1.19429 0.95634 0.96445 1.33667 0.89318 1.26034 0.99180 0.97237
0.92431 1.69747 1.19823 1.29611 1.22081 0.86122 0.78890 0.80535
0.80283 1.19329 1.19781 1.18170 0.93683 0.93605 0.90298 0.91637
0.91262 0.91384 0.93155 0.94128 0.92096 0.93238 0.92883 0.92996
0.81940 0.90184
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.05 0.85 10.41 101.05 1.05 1.91 16
2 O -0.30 -7.14 9.89 -17.50 -0.17 -7.31 16
3 C 0.23 5.94 7.57 -15.85 -0.12 5.82 16
4 N -0.54 -13.13 8.17 -10.18 -0.08 -13.21 16
5 C 0.19 4.51 6.26 -156.92 -0.98 3.53 16
6 C -0.02 -0.35 5.11 -27.88 -0.14 -0.49 16
7 C -0.09 -1.46 2.91 -90.62 -0.26 -1.72 16
8 C -0.14 -2.25 8.91 37.16 0.33 -1.92 16
9 C -0.14 -1.85 9.19 37.16 0.34 -1.51 16
10 N -0.51 -13.06 10.29 -10.14 -0.10 -13.16 16
11 C 0.07 1.97 10.00 -16.46 -0.16 1.80 16
12 C 0.01 0.39 5.61 -106.38 -0.60 -0.21 16
13 C -0.42 -11.00 8.80 -37.83 -0.33 -11.33 16
14 H 0.09 2.27 7.71 -52.49 -0.40 1.87 16
15 C 0.07 1.69 5.19 -17.33 -0.09 1.60 16
16 N -0.79 -19.56 10.94 55.55 0.61 -18.95 16
17 Si 0.92 17.96 29.59 -169.99 -5.03 12.93 16
18 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16
19 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16
20 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16
21 H 0.04 0.79 8.12 -51.93 -0.42 0.37 16
22 H 0.05 0.82 8.12 -51.93 -0.42 0.40 16
23 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16
24 H 0.07 1.17 8.14 -51.92 -0.42 0.75 16
25 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16
26 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16
27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16
28 H 0.04 0.58 8.14 -51.92 -0.42 0.16 16
29 H 0.06 1.18 6.65 -51.93 -0.35 0.84 16
30 H 0.05 0.58 8.14 -51.92 -0.42 0.15 16
31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16
32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16
33 H 0.16 4.32 6.21 -52.49 -0.33 4.00 16
34 H 0.29 6.41 8.30 -40.82 -0.34 6.07 16
LS Contribution 288.55 15.07 4.35 4.35
Total: -1.00 -28.07 288.55 -6.26 -34.33
By element:
Atomic # 1 Polarization: 8.41 SS G_CDS: -4.86 Total: 3.55 kcal
Atomic # 6 Polarization: -1.55 SS G_CDS: -0.97 Total: -2.52 kcal
Atomic # 7 Polarization: -45.75 SS G_CDS: 0.42 Total: -45.33 kcal
Atomic # 8 Polarization: -7.14 SS G_CDS: -0.17 Total: -7.31 kcal
Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.93 kcal
Total LS contribution 4.35 Total: 4.35 kcal
Total: -28.07 -6.26 -34.33 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261157903.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 11.096 kcal
(2) G-P(sol) polarization free energy of solvation -28.066 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.970 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.261 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.328 kcal
(6) G-S(sol) free energy of system = (1) + (5) -23.231 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds