Wall clock time and date at job start Mon Mar 30 2020 03:13:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42905 * 1
3 3 C 1.35268 * 116.99739 * 2 1
4 4 N 1.32564 * 120.68548 * 359.97438 * 3 2 1
5 5 C 1.31869 * 120.98724 * 179.97438 * 4 3 2
6 6 C 1.50703 * 118.76864 * 179.97438 * 5 4 3
7 7 C 1.53008 * 109.47256 * 89.99940 * 6 5 4
8 8 C 1.53003 * 109.46663 * 294.99978 * 7 6 5
9 9 C 1.52998 * 109.47033 * 175.00332 * 7 6 5
10 10 N 1.32035 * 122.46253 * 0.25791 * 5 4 3
11 11 C 1.32010 * 121.25224 * 359.47320 * 10 5 4
12 12 C 1.40926 * 118.83133 * 0.51217 * 11 10 5
13 13 C 1.41174 * 121.08035 * 179.73180 * 12 11 10
14 14 H 1.08001 * 119.99662 * 156.22559 * 13 12 11
15 15 C 1.39955 * 120.00065 * 336.21359 * 13 12 11
16 16 N 1.30847 * 120.00297 * 342.86924 * 15 13 12
17 17 Si 1.86806 * 119.99949 * 162.86967 * 15 13 12
18 18 H 1.48496 * 109.47230 * 94.70652 * 17 15 13
19 19 H 1.48494 * 109.47166 * 214.70573 * 17 15 13
20 20 H 1.48507 * 109.46850 * 334.70810 * 17 15 13
21 21 H 1.08997 * 109.47652 * 300.00107 * 1 2 3
22 22 H 1.08998 * 109.46897 * 60.00648 * 1 2 3
23 23 H 1.09007 * 109.46630 * 180.02562 * 1 2 3
24 24 H 1.09007 * 109.47244 * 330.00272 * 6 5 4
25 25 H 1.08995 * 109.47430 * 209.99654 * 6 5 4
26 26 H 1.08999 * 109.46767 * 55.00028 * 7 6 5
27 27 H 1.08999 * 109.47570 * 299.99559 * 8 7 6
28 28 H 1.09009 * 109.46330 * 179.97438 * 8 7 6
29 29 H 1.09002 * 109.47169 * 60.00267 * 8 7 6
30 30 H 1.09009 * 109.46877 * 180.02562 * 9 7 6
31 31 H 1.09002 * 109.46855 * 299.99321 * 9 7 6
32 32 H 1.08990 * 109.47552 * 60.00057 * 9 7 6
33 33 H 1.07994 * 120.59082 * 180.23684 * 11 10 5
34 34 H 0.96998 * 120.00434 * 180.02562 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0431 1.2053 0.0000
4 7 1.3344 2.3256 -0.0005
5 6 1.9268 3.5037 0.0000
6 6 1.0725 4.7452 -0.0012
7 6 0.7816 5.1656 1.4409
8 6 -0.0667 4.0910 2.1241
9 6 0.0206 6.4929 1.4416
10 7 3.2405 3.6364 -0.0040
11 6 4.0353 2.5824 0.0016
12 6 3.4588 1.2965 0.0010
13 6 4.2639 0.1368 0.0012
14 1 3.8686 -0.7950 0.3779
15 6 5.5743 0.1946 -0.4869
16 7 5.9488 1.1979 -1.2388
17 14 6.7888 -1.1606 -0.0649
18 1 6.7991 -2.1722 -1.1520
19 1 8.1473 -0.5793 0.0832
20 1 6.3855 -1.8075 1.2095
21 1 -0.3634 0.5138 0.8899
22 1 -0.3633 0.5137 -0.8900
23 1 -0.3633 -1.0278 0.0005
24 1 0.1339 4.5398 -0.5161
25 1 1.6002 5.5489 -0.5145
26 1 1.7208 5.2849 1.9810
27 1 -1.0060 3.9717 1.5840
28 1 -0.2736 4.3904 3.1516
29 1 0.4754 3.1454 2.1236
30 1 -0.1862 6.7926 2.4691
31 1 0.6250 7.2584 0.9549
32 1 -0.9185 6.3736 0.9015
33 1 5.1085 2.7033 0.0021
34 1 6.8569 1.2378 -1.5774
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000261157903.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:13:12
Heat of formation + Delta-G solvation = -40.821257 kcal
Electronic energy + Delta-G solvation = -16818.804258 eV
Core-core repulsion = 14136.435814 eV
Total energy + Delta-G solvation = -2682.368444 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.41 seconds
Orbital eigenvalues (eV)
-41.37707 -38.98993 -37.19273 -35.90567 -33.34960 -32.44445 -29.39251 -28.25293
-27.90195 -26.23099 -24.06040 -23.20195 -20.95764 -19.47534 -18.75934 -18.34433
-16.89231 -16.64620 -15.95055 -15.39096 -15.28546 -15.21354 -15.03878 -14.13291
-14.07117 -13.73565 -13.21256 -13.08777 -12.96871 -12.77259 -12.71387 -12.57311
-12.32888 -12.17002 -11.86796 -11.67310 -11.50901 -11.28190 -11.04093 -10.56972
-9.86938 -9.51952 -8.79656 -6.42090 0.62953 0.82542 1.39452 1.48691
1.56582 2.17825 2.50720 2.65882 3.52425 3.60151 3.85201 4.13655
4.18170 4.35640 4.48451 4.49288 4.65195 4.71991 4.77761 4.84648
4.86482 4.95803 4.99256 5.08882 5.12898 5.18926 5.26509 5.39042
5.51495 5.55543 5.84634 6.15825 6.29978 6.60066 6.63276 6.98510
7.85879 8.18007
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.030592 B = 0.007372 C = 0.006328
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 915.062960 B = 3797.003819 C = 4423.952471
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.043 3.957
2 O -0.320 6.320
3 C 0.221 3.779
4 N -0.539 5.539
5 C 0.187 3.813
6 C -0.017 4.017
7 C -0.085 4.085
8 C -0.132 4.132
9 C -0.134 4.134
10 N -0.527 5.527
11 C 0.055 3.945
12 C -0.018 4.018
13 C -0.451 4.451
14 H 0.084 0.916
15 C 0.034 3.966
16 N -0.816 5.816
17 Si 0.994 3.006
18 H -0.261 1.261
19 H -0.260 1.260
20 H -0.258 1.258
21 H 0.048 0.952
22 H 0.045 0.955
23 H 0.119 0.881
24 H 0.078 0.922
25 H 0.075 0.925
26 H 0.048 0.952
27 H 0.061 0.939
28 H 0.061 0.939
29 H 0.023 0.977
30 H 0.065 0.935
31 H 0.059 0.941
32 H 0.065 0.935
33 H 0.154 0.846
34 H 0.298 0.702
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.285 2.155 3.318 7.427
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.052 4.052
2 O -0.226 6.226
3 C 0.030 3.970
4 N -0.268 5.268
5 C -0.076 4.076
6 C -0.056 4.056
7 C -0.104 4.104
8 C -0.189 4.189
9 C -0.191 4.191
10 N -0.243 5.243
11 C -0.111 4.111
12 C -0.025 4.025
13 C -0.480 4.480
14 H 0.102 0.898
15 C -0.183 4.183
16 N -0.441 5.441
17 Si 0.813 3.187
18 H -0.185 1.185
19 H -0.184 1.184
20 H -0.181 1.181
21 H 0.066 0.934
22 H 0.064 0.936
23 H 0.137 0.863
24 H 0.096 0.904
25 H 0.094 0.906
26 H 0.066 0.934
27 H 0.080 0.920
28 H 0.080 0.920
29 H 0.042 0.958
30 H 0.084 0.916
31 H 0.078 0.922
32 H 0.084 0.916
33 H 0.171 0.829
34 H 0.109 0.891
Dipole moment (debyes) X Y Z Total
from point charges -6.583 2.805 3.156 7.821
hybrid contribution 0.998 -1.320 -0.116 1.659
sum -5.585 1.485 3.040 6.530
Atomic orbital electron populations
1.22868 0.77443 1.03662 1.01235 1.86067 1.22904 1.24631 1.88992
1.20476 0.89643 0.84587 1.02255 1.67285 1.41766 0.98618 1.19132
1.22470 0.88041 0.91902 1.05216 1.20128 0.96852 0.90624 0.98018
1.21011 0.98587 0.96497 0.94351 1.21706 0.99552 0.97586 1.00104
1.21747 1.00120 0.94789 1.02478 1.67621 1.06157 1.35655 1.14877
1.23030 0.99253 0.86348 1.02487 1.18827 0.89788 0.96872 0.96983
1.19600 0.97144 0.96108 1.35195 0.89778 1.26923 1.00178 0.99740
0.91439 1.69775 1.20847 1.31209 1.22269 0.85005 0.76465 0.77251
0.79935 1.18510 1.18417 1.18113 0.93365 0.93629 0.86314 0.90361
0.90624 0.93371 0.92019 0.92015 0.95796 0.91576 0.92161 0.91639
0.82870 0.89116
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 21.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 1.51 10.41 113.37 1.18 2.69 16
2 O -0.32 -15.15 9.89 -85.53 -0.85 -15.99 16
3 C 0.22 11.61 7.57 85.48 0.65 12.26 16
4 N -0.54 -26.26 8.17 -299.05 -2.44 -28.70 16
5 C 0.19 8.92 6.26 138.66 0.87 9.79 16
6 C -0.02 -0.62 5.11 29.85 0.15 -0.47 16
7 C -0.08 -2.66 2.91 -10.79 -0.03 -2.69 16
8 C -0.13 -4.12 8.91 71.98 0.64 -3.48 16
9 C -0.13 -3.05 9.19 71.98 0.66 -2.39 16
10 N -0.53 -27.53 10.29 -185.99 -1.91 -29.45 16
11 C 0.06 3.05 10.00 85.32 0.85 3.90 16
12 C -0.02 -0.99 5.61 -21.00 -0.12 -1.10 16
13 C -0.45 -24.20 8.80 23.41 0.21 -23.99 16
14 H 0.08 4.43 7.71 -2.91 -0.02 4.41 16
15 C 0.03 1.64 5.19 85.26 0.44 2.09 16
16 N -0.82 -41.24 10.94 21.83 0.24 -41.00 16
17 Si 0.99 36.64 29.59 68.60 2.03 38.67 16
18 H -0.26 -9.24 7.11 99.48 0.71 -8.54 16
19 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16
20 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16
21 H 0.05 1.65 8.12 -2.39 -0.02 1.63 16
22 H 0.04 1.59 8.12 -2.39 -0.02 1.57 16
23 H 0.12 3.18 8.14 -2.38 -0.02 3.16 16
24 H 0.08 2.66 8.14 -2.38 -0.02 2.64 16
25 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16
26 H 0.05 1.69 8.14 -2.39 -0.02 1.68 16
27 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16
28 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16
29 H 0.02 0.90 6.65 -2.39 -0.02 0.88 16
30 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16
31 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16
32 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16
33 H 0.15 8.55 6.21 -2.91 -0.02 8.53 16
34 H 0.30 13.37 8.30 -92.71 -0.77 12.60 16
Total: -1.00 -62.03 288.55 3.65 -58.38
By element:
Atomic # 1 Polarization: 20.41 SS G_CDS: 1.08 Total: 21.49 kcal
Atomic # 6 Polarization: -8.91 SS G_CDS: 5.50 Total: -3.40 kcal
Atomic # 7 Polarization: -95.03 SS G_CDS: -4.12 Total: -99.15 kcal
Atomic # 8 Polarization: -15.15 SS G_CDS: -0.85 Total: -15.99 kcal
Atomic # 14 Polarization: 36.64 SS G_CDS: 2.03 Total: 38.67 kcal
Total: -62.03 3.65 -58.38 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261157903.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 17.559 kcal
(2) G-P(sol) polarization free energy of solvation -62.031 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.472 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.651 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.380 kcal
(6) G-S(sol) free energy of system = (1) + (5) -40.821 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.41 seconds