Wall clock time and date at job start Mon Mar 30 2020 03:19:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.52999 * 109.47479 * 2 1
4 4 C 1.53003 * 109.47058 * 240.00021 * 2 1 3
5 5 H 1.09002 * 115.54510 * 41.85816 * 4 2 1
6 6 C 1.52995 * 117.49880 * 187.52347 * 4 2 1
7 7 C 1.52997 * 117.49973 * 256.15283 * 4 2 1
8 8 H 1.08996 * 117.49850 * 145.02383 * 7 4 2
9 9 C 1.50697 * 117.49857 * 359.97438 * 7 4 2
10 10 O 1.21295 * 120.00057 * 33.46742 * 9 7 4
11 11 N 1.34779 * 120.00245 * 213.45402 * 9 7 4
12 12 C 1.37096 * 120.00136 * 180.02562 * 11 9 7
13 13 H 1.08000 * 120.00360 * 20.98896 * 12 11 9
14 14 C 1.38953 * 120.00048 * 200.99581 * 12 11 9
15 15 N 1.31412 * 120.00099 * 14.20260 * 14 12 11
16 16 Si 1.86797 * 119.99880 * 194.20730 * 14 12 11
17 17 H 1.48510 * 109.47270 * 59.99514 * 16 14 12
18 18 H 1.48498 * 109.47210 * 179.97438 * 16 14 12
19 19 H 1.48495 * 109.47423 * 299.99734 * 16 14 12
20 20 C 1.46506 * 119.99782 * 0.02562 * 11 9 7
21 21 C 1.47194 * 109.47080 * 79.87282 * 20 11 9
22 22 N 5.26411 * 157.33653 * 188.45117 * 2 1 3
23 23 H 1.08997 * 109.47273 * 55.04831 * 1 2 3
24 24 H 1.08994 * 109.47179 * 175.05357 * 1 2 3
25 25 H 1.09008 * 109.46962 * 295.05472 * 1 2 3
26 26 H 1.09005 * 109.47103 * 120.00325 * 2 1 3
27 27 H 1.09008 * 109.46986 * 59.99983 * 3 2 1
28 28 H 1.09000 * 109.47406 * 180.02562 * 3 2 1
29 29 H 1.08997 * 109.46970 * 300.00423 * 3 2 1
30 30 H 1.09005 * 117.50217 * 214.97507 * 6 4 2
31 31 H 1.09001 * 117.50237 * 359.97438 * 6 4 2
32 32 H 0.96997 * 120.00085 * 180.02562 * 15 14 12
33 33 H 1.08995 * 109.46535 * 199.87099 * 20 11 9
34 34 H 1.08998 * 109.47072 * 319.86908 * 20 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0400 -0.7213 -1.2493
5 1 1.5060 -0.4966 -2.1726
6 6 3.5439 -0.9839 -1.3488
7 6 2.5817 -2.1413 -1.0735
8 1 2.4042 -2.8512 -1.8813
9 6 2.5726 -2.7223 0.3169
10 8 1.6862 -2.4289 1.0911
11 7 3.5494 -3.5682 0.7002
12 6 3.5409 -4.0972 1.9650
13 1 2.6221 -4.1266 2.5319
14 6 4.7144 -4.5954 2.5176
15 7 5.8724 -4.3159 1.9628
16 14 4.6459 -5.6627 4.0491
17 1 3.8367 -6.8765 3.7709
18 1 6.0226 -6.0639 4.4349
19 1 4.0238 -4.8968 5.1589
20 6 4.6203 -3.9224 -0.2348
21 6 5.6179 -2.8407 -0.2706
22 7 6.3876 -2.0063 -0.2981
23 1 -0.3633 0.5887 -0.8423
24 1 -0.3633 -1.0238 -0.0886
25 1 -0.3633 0.4352 0.9310
26 1 1.8933 -0.5139 0.8900
27 1 1.6767 1.9563 0.8901
28 1 3.1300 1.4424 -0.0005
29 1 1.6767 1.9563 -0.8899
30 1 3.9994 -0.9326 -2.3378
31 1 4.1701 -0.6425 -0.5246
32 1 6.6915 -4.6640 2.3484
33 1 5.0974 -4.8461 0.0925
34 1 4.2010 -4.0632 -1.2310
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000274652084.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:19:02
Heat of formation + Delta-G solvation = 19.862752 kcal
Electronic energy + Delta-G solvation = -17230.436096 eV
Core-core repulsion = 14550.699108 eV
Total energy + Delta-G solvation = -2679.736988 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-39.48296 -36.89553 -35.60205 -34.24164 -32.95465 -31.63777 -27.45242 -26.72113
-25.45303 -22.85352 -22.54649 -19.83619 -18.51308 -17.77524 -16.29159 -16.25510
-15.09161 -14.80954 -14.20197 -13.68713 -13.58680 -13.06649 -12.92327 -12.67461
-12.41428 -12.08656 -11.82495 -11.62635 -11.60351 -11.19957 -11.15079 -10.77639
-10.77166 -10.51351 -10.43339 -10.34470 -10.13758 -9.64677 -9.51009 -9.14186
-8.40727 -7.96852 -6.46455 -4.02334 3.12745 3.21691 3.23754 3.56548
3.75991 4.00260 4.10120 4.25085 4.79251 4.92775 5.09320 5.22804
5.31846 5.44746 5.59253 5.71521 5.78570 5.84343 6.02689 6.05145
6.16755 6.21861 6.24965 6.30424 6.41411 6.52356 6.64424 6.65282
6.82655 7.11399 7.46681 7.95139 8.31214 8.76337 9.02074 9.21850
9.78459 10.58620
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.027706 B = 0.008781 C = 0.007501
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1010.384110 B = 3188.049795 C = 3731.992328
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.128 4.128
2 C -0.081 4.081
3 C -0.142 4.142
4 C -0.114 4.114
5 H 0.100 0.900
6 C -0.164 4.164
7 C -0.173 4.173
8 H 0.115 0.885
9 C 0.485 3.515
10 O -0.561 6.561
11 N -0.441 5.441
12 C -0.309 4.309
13 H 0.106 0.894
14 C 0.030 3.970
15 N -0.885 5.885
16 Si 0.931 3.069
17 H -0.272 1.272
18 H -0.284 1.284
19 H -0.273 1.273
20 C 0.221 3.779
21 C 0.252 3.748
22 N -0.478 5.478
23 H 0.039 0.961
24 H 0.059 0.941
25 H 0.046 0.954
26 H 0.104 0.896
27 H 0.049 0.951
28 H 0.050 0.950
29 H 0.046 0.954
30 H 0.092 0.908
31 H 0.096 0.904
32 H 0.273 0.727
33 H 0.135 0.865
34 H 0.079 0.921
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.669 1.779 -6.694 8.353
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.185 4.185
2 C -0.099 4.099
3 C -0.200 4.200
4 C -0.133 4.133
5 H 0.118 0.882
6 C -0.201 4.201
7 C -0.195 4.195
8 H 0.133 0.867
9 C 0.274 3.726
10 O -0.444 6.444
11 N -0.161 5.161
12 C -0.436 4.436
13 H 0.124 0.876
14 C -0.173 4.173
15 N -0.525 5.525
16 Si 0.757 3.243
17 H -0.197 1.197
18 H -0.210 1.210
19 H -0.199 1.199
20 C 0.093 3.907
21 C -0.067 4.067
22 N -0.158 5.158
23 H 0.058 0.942
24 H 0.078 0.922
25 H 0.065 0.935
26 H 0.122 0.878
27 H 0.068 0.932
28 H 0.069 0.931
29 H 0.065 0.935
30 H 0.110 0.890
31 H 0.114 0.886
32 H 0.084 0.916
33 H 0.152 0.848
34 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges -3.775 3.087 -6.276 7.948
hybrid contribution 0.074 -0.919 0.695 1.154
sum -3.701 2.168 -5.581 7.039
Atomic orbital electron populations
1.21604 0.95314 1.01614 0.99991 1.20969 0.95824 0.94726 0.98382
1.21812 1.00827 0.96677 1.00640 1.22263 0.95572 0.95952 0.99481
0.88223 1.23039 0.92804 1.01563 1.02737 1.22262 1.06788 0.92424
0.97991 0.86681 1.19302 0.84886 0.80731 0.87692 1.90489 1.38102
1.60839 1.54939 1.43575 1.20441 1.39712 1.12343 1.19688 0.96458
1.36171 0.91269 0.87629 1.25311 0.94378 0.98297 0.99297 1.69826
0.97726 1.43248 1.41668 0.85916 0.77220 0.80026 0.81114 1.19748
1.20989 1.19870 1.18778 0.84908 0.94106 0.92867 1.29328 0.93374
0.93468 0.90483 1.80871 1.11514 1.12128 1.11268 0.94207 0.92213
0.93467 0.87788 0.93222 0.93111 0.93509 0.88961 0.88589 0.91643
0.84795 0.90341
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.99 9.12 37.16 0.34 -1.66 16
2 C -0.08 -1.40 2.28 -90.62 -0.21 -1.61 16
3 C -0.14 -2.14 9.10 37.16 0.34 -1.81 16
4 C -0.11 -1.85 5.04 -90.62 -0.46 -2.30 16
5 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16
6 C -0.16 -2.78 7.81 -26.73 -0.21 -2.98 16
7 C -0.17 -3.06 4.57 -91.77 -0.42 -3.48 16
8 H 0.12 1.72 7.97 -51.93 -0.41 1.30 16
9 C 0.49 10.87 6.68 -10.99 -0.07 10.79 16
10 O -0.56 -14.10 13.70 5.54 0.08 -14.02 16
11 N -0.44 -10.22 2.62 -117.93 -0.31 -10.53 16
12 C -0.31 -7.87 9.31 -14.93 -0.14 -8.00 16
13 H 0.11 2.82 7.39 -52.49 -0.39 2.43 16
14 C 0.03 0.73 5.02 -17.47 -0.09 0.65 16
15 N -0.89 -22.14 9.41 55.50 0.52 -21.62 16
16 Si 0.93 19.67 29.58 -169.99 -5.03 14.64 16
17 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16
18 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16
19 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16
20 C 0.22 4.42 4.89 -6.83 -0.03 4.39 16
21 C 0.25 5.48 11.48 -20.78 -0.24 5.24 16
22 N -0.48 -11.07 18.18 42.13 0.77 -10.30 16
23 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16
24 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16
25 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16
26 H 0.10 2.24 5.19 -51.93 -0.27 1.98 16
27 H 0.05 0.71 8.14 -51.92 -0.42 0.28 16
28 H 0.05 0.80 7.85 -51.93 -0.41 0.39 16
29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16
30 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16
31 H 0.10 1.92 7.23 -51.93 -0.38 1.55 16
32 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16
33 H 0.13 2.78 6.17 -51.93 -0.32 2.46 16
34 H 0.08 1.24 7.19 -51.93 -0.37 0.86 16
LS Contribution 284.42 15.07 4.29 4.29
Total: -1.00 -28.47 284.42 -5.52 -33.99
By element:
Atomic # 1 Polarization: 8.96 SS G_CDS: -4.64 Total: 4.32 kcal
Atomic # 6 Polarization: 0.42 SS G_CDS: -1.19 Total: -0.77 kcal
Atomic # 7 Polarization: -43.42 SS G_CDS: 0.98 Total: -42.45 kcal
Atomic # 8 Polarization: -14.10 SS G_CDS: 0.08 Total: -14.02 kcal
Atomic # 14 Polarization: 19.67 SS G_CDS: -5.03 Total: 14.64 kcal
Total LS contribution 4.29 Total: 4.29 kcal
Total: -28.47 -5.52 -33.99 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000274652084.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 53.850 kcal
(2) G-P(sol) polarization free energy of solvation -28.472 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.378 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.515 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.987 kcal
(6) G-S(sol) free energy of system = (1) + (5) 19.863 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds