Wall clock time and date at job start Mon Mar 30 2020 03:19:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53008 * 109.46812 * 2 1
4 4 C 1.52994 * 109.47049 * 120.00111 * 2 1 3
5 5 H 1.09004 * 115.56147 * 274.31098 * 4 2 1
6 6 C 1.52994 * 117.49959 * 128.62712 * 4 2 1
7 7 C 1.52990 * 117.50340 * 60.00318 * 4 2 1
8 8 H 1.09006 * 117.51999 * 0.02562 * 7 4 2
9 9 C 1.50702 * 117.49997 * 214.98056 * 7 4 2
10 10 O 1.21291 * 120.00223 * 359.97438 * 9 7 4
11 11 N 1.34780 * 120.00008 * 179.97438 * 9 7 4
12 12 C 1.37099 * 119.99835 * 179.97438 * 11 9 7
13 13 H 1.07997 * 120.00015 * 336.62218 * 12 11 9
14 14 C 1.38950 * 119.99803 * 156.62906 * 12 11 9
15 15 N 1.31412 * 120.00460 * 349.72731 * 14 12 11
16 16 Si 1.86804 * 119.99947 * 169.73120 * 14 12 11
17 17 H 1.48497 * 109.47121 * 359.97438 * 16 14 12
18 18 H 1.48494 * 109.47282 * 119.99902 * 16 14 12
19 19 H 1.48501 * 109.46755 * 240.00142 * 16 14 12
20 20 C 1.46496 * 119.99999 * 359.97438 * 11 9 7
21 21 C 1.47199 * 109.47320 * 277.91174 * 20 11 9
22 22 N 5.51450 * 57.03543 * 169.38624 * 2 1 3
23 23 H 1.09006 * 109.46885 * 180.02562 * 1 2 3
24 24 H 1.08997 * 109.47258 * 299.99580 * 1 2 3
25 25 H 1.09003 * 109.47220 * 60.00180 * 1 2 3
26 26 H 1.08997 * 109.47258 * 240.00420 * 2 1 3
27 27 H 1.08992 * 109.46695 * 180.02562 * 3 2 1
28 28 H 1.09003 * 109.47081 * 299.99905 * 3 2 1
29 29 H 1.08997 * 109.46866 * 60.00180 * 3 2 1
30 30 H 1.09002 * 117.50412 * 145.01365 * 6 4 2
31 31 H 1.09005 * 117.49955 * 359.97438 * 6 4 2
32 32 H 0.96997 * 120.00724 * 179.97438 * 15 14 12
33 33 H 1.09004 * 109.47197 * 157.90957 * 20 11 9
34 34 H 1.08998 * 109.47188 * 37.91241 * 20 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 6 2.0400 -0.7212 1.2492
5 1 2.1270 -0.1061 2.1448
6 6 3.0741 -1.8312 1.0513
7 6 1.6358 -2.1852 1.4342
8 1 1.0069 -2.6350 0.6659
9 6 1.3885 -2.6663 2.8408
10 8 1.5125 -1.9015 3.7740
11 7 1.0295 -3.9465 3.0618
12 6 0.8050 -4.3843 4.3415
13 1 1.2569 -3.8684 5.1757
14 6 -0.0039 -5.4917 4.5650
15 7 -0.7133 -5.9967 3.5808
16 14 -0.0830 -6.2628 6.2646
17 1 0.8034 -5.5127 7.1902
18 1 -1.4796 -6.2126 6.7665
19 1 0.3650 -7.6766 6.1880
20 6 0.8792 -4.8701 1.9347
21 6 -0.4478 -4.6875 1.3242
22 7 -1.4706 -4.5475 0.8522
23 1 -0.3633 -1.0277 0.0005
24 1 -0.3633 0.5137 0.8900
25 1 -0.3634 0.5138 -0.8900
26 1 1.8933 -0.5137 -0.8900
27 1 3.1299 1.4426 -0.0005
28 1 1.6766 1.9564 -0.8900
29 1 1.6766 1.9563 0.8900
30 1 3.8416 -1.9464 1.8167
31 1 3.3909 -2.0480 0.0311
32 1 -1.2777 -6.7700 3.7367
33 1 0.9777 -5.8959 2.2898
34 1 1.6514 -4.6667 1.1928
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000274652089.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:19:06
Heat of formation + Delta-G solvation = 11.667894 kcal
Electronic energy + Delta-G solvation = -16842.818554 eV
Core-core repulsion = 14162.726211 eV
Total energy + Delta-G solvation = -2680.092343 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-39.34053 -37.20899 -35.65886 -34.29828 -32.98020 -31.71324 -27.46516 -27.02150
-25.54533 -23.09212 -22.45886 -19.73225 -18.69964 -17.83282 -16.72989 -16.08640
-15.06881 -14.82377 -14.19644 -14.10379 -13.42615 -13.28422 -12.97201 -12.91706
-12.31967 -12.06712 -11.99424 -11.83205 -11.56070 -11.22762 -11.18802 -11.11042
-10.89295 -10.53573 -10.46920 -10.45627 -10.32285 -9.81782 -9.58385 -9.23700
-8.58403 -7.98685 -6.45603 -4.04428 3.09016 3.22361 3.28171 3.44330
3.75291 4.00948 4.12800 4.30870 4.62276 4.93340 5.05581 5.07750
5.22615 5.26790 5.42560 5.50555 5.60855 5.78838 5.82465 5.86880
6.00772 6.01589 6.06331 6.17544 6.21790 6.34155 6.41355 6.51540
6.63765 6.71628 7.46681 7.96406 8.31255 8.76865 9.02310 9.21446
9.77886 10.59855
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.033401 B = 0.007250 C = 0.006528
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 838.085454 B = 3861.235540 C = 4287.904321
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.065 4.065
3 C -0.142 4.142
4 C -0.119 4.119
5 H 0.114 0.886
6 C -0.156 4.156
7 C -0.174 4.174
8 H 0.110 0.890
9 C 0.489 3.511
10 O -0.573 6.573
11 N -0.443 5.443
12 C -0.306 4.306
13 H 0.106 0.894
14 C 0.029 3.971
15 N -0.888 5.888
16 Si 0.932 3.068
17 H -0.268 1.268
18 H -0.282 1.282
19 H -0.279 1.279
20 C 0.223 3.777
21 C 0.249 3.751
22 N -0.478 5.478
23 H 0.056 0.944
24 H 0.056 0.944
25 H 0.050 0.950
26 H 0.068 0.932
27 H 0.054 0.946
28 H 0.051 0.949
29 H 0.055 0.945
30 H 0.096 0.904
31 H 0.095 0.905
32 H 0.272 0.728
33 H 0.132 0.868
34 H 0.081 0.919
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.907 4.784 -7.090 10.994
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.083 4.083
3 C -0.199 4.199
4 C -0.138 4.138
5 H 0.132 0.868
6 C -0.194 4.194
7 C -0.196 4.196
8 H 0.127 0.873
9 C 0.277 3.723
10 O -0.455 6.455
11 N -0.163 5.163
12 C -0.433 4.433
13 H 0.123 0.877
14 C -0.173 4.173
15 N -0.528 5.528
16 Si 0.759 3.241
17 H -0.192 1.192
18 H -0.208 1.208
19 H -0.205 1.205
20 C 0.096 3.904
21 C -0.069 4.069
22 N -0.158 5.158
23 H 0.075 0.925
24 H 0.075 0.925
25 H 0.069 0.931
26 H 0.086 0.914
27 H 0.073 0.927
28 H 0.070 0.930
29 H 0.074 0.926
30 H 0.115 0.885
31 H 0.113 0.887
32 H 0.083 0.917
33 H 0.150 0.850
34 H 0.099 0.901
Dipole moment (debyes) X Y Z Total
from point charges 5.327 5.193 -7.299 10.422
hybrid contribution -0.035 -0.785 0.977 1.254
sum 5.292 4.408 -6.321 9.348
Atomic orbital electron populations
1.21814 0.94988 1.02204 1.01335 1.20710 0.95762 0.95811 0.96057
1.21790 1.00901 0.95716 1.01521 1.22351 1.01765 0.90019 0.99615
0.86782 1.23016 0.91436 1.02848 1.02055 1.22320 0.99624 0.99984
0.97626 0.87250 1.19317 0.82601 0.81815 0.88535 1.90526 1.56363
1.54039 1.44594 1.43490 1.60107 1.06723 1.05969 1.19772 1.28062
1.11888 0.83580 0.87682 1.25351 0.94482 0.97908 0.99571 1.69751
1.26604 1.24487 1.31979 0.85755 0.78194 0.78635 0.81517 1.19182
1.20827 1.20522 1.18770 0.85006 0.98944 0.87722 1.29356 0.95291
0.91609 0.90652 1.80854 1.11510 1.10163 1.13309 0.92498 0.92496
0.93101 0.91387 0.92661 0.92984 0.92560 0.88505 0.88650 0.91700
0.85001 0.90143
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.04 9.03 37.16 0.34 -1.70 16
2 C -0.06 -0.84 3.07 -90.62 -0.28 -1.12 16
3 C -0.14 -1.57 9.18 37.16 0.34 -1.23 16
4 C -0.12 -1.87 4.66 -90.63 -0.42 -2.29 16
5 H 0.11 2.01 7.64 -51.93 -0.40 1.62 16
6 C -0.16 -2.26 9.88 -26.74 -0.26 -2.52 16
7 C -0.17 -3.13 4.01 -91.78 -0.37 -3.50 16
8 H 0.11 1.91 6.09 -51.93 -0.32 1.60 16
9 C 0.49 11.35 7.32 -10.98 -0.08 11.27 16
10 O -0.57 -15.26 15.96 5.55 0.09 -15.17 16
11 N -0.44 -10.54 2.61 -117.94 -0.31 -10.85 16
12 C -0.31 -7.96 9.28 -14.93 -0.14 -8.10 16
13 H 0.11 2.87 7.42 -52.49 -0.39 2.48 16
14 C 0.03 0.73 5.09 -17.47 -0.09 0.64 16
15 N -0.89 -22.59 9.18 55.50 0.51 -22.08 16
16 Si 0.93 19.98 29.57 -169.99 -5.03 14.96 16
17 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16
18 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16
19 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16
20 C 0.22 4.54 4.80 -6.83 -0.03 4.50 16
21 C 0.25 5.59 12.64 -20.79 -0.26 5.32 16
22 N -0.48 -11.47 18.53 42.12 0.78 -10.69 16
23 H 0.06 0.89 7.29 -51.93 -0.38 0.51 16
24 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16
25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16
26 H 0.07 0.81 7.90 -51.93 -0.41 0.40 16
27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16
28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16
29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16
30 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16
31 H 0.10 1.12 8.05 -51.93 -0.42 0.70 16
32 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16
33 H 0.13 2.76 6.38 -51.93 -0.33 2.43 16
34 H 0.08 1.29 7.10 -51.93 -0.37 0.92 16
LS Contribution 291.16 15.07 4.39 4.39
Total: -1.00 -30.12 291.16 -5.51 -35.63
By element:
Atomic # 1 Polarization: 7.22 SS G_CDS: -4.68 Total: 2.54 kcal
Atomic # 6 Polarization: 2.54 SS G_CDS: -1.26 Total: 1.27 kcal
Atomic # 7 Polarization: -44.60 SS G_CDS: 0.98 Total: -43.62 kcal
Atomic # 8 Polarization: -15.26 SS G_CDS: 0.09 Total: -15.17 kcal
Atomic # 14 Polarization: 19.98 SS G_CDS: -5.03 Total: 14.96 kcal
Total LS contribution 4.39 Total: 4.39 kcal
Total: -30.12 -5.51 -35.63 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000274652089.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 47.297 kcal
(2) G-P(sol) polarization free energy of solvation -30.122 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.175 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.507 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.629 kcal
(6) G-S(sol) free energy of system = (1) + (5) 11.668 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds