Wall clock time and date at job start Mon Mar 30 2020 03:19:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53008 * 109.46812 * 2 1
4 4 C 1.52994 * 109.47049 * 120.00111 * 2 1 3
5 5 H 1.09004 * 115.56147 * 274.31098 * 4 2 1
6 6 C 1.52994 * 117.49959 * 128.62712 * 4 2 1
7 7 C 1.52990 * 117.50340 * 60.00318 * 4 2 1
8 8 H 1.09006 * 117.51999 * 0.02562 * 7 4 2
9 9 C 1.50702 * 117.49997 * 214.98056 * 7 4 2
10 10 O 1.21291 * 120.00223 * 359.97438 * 9 7 4
11 11 N 1.34780 * 120.00008 * 179.97438 * 9 7 4
12 12 C 1.37099 * 119.99835 * 179.97438 * 11 9 7
13 13 H 1.07997 * 120.00015 * 336.62218 * 12 11 9
14 14 C 1.38950 * 119.99803 * 156.62906 * 12 11 9
15 15 N 1.31412 * 120.00460 * 349.72731 * 14 12 11
16 16 Si 1.86804 * 119.99947 * 169.73120 * 14 12 11
17 17 H 1.48497 * 109.47121 * 359.97438 * 16 14 12
18 18 H 1.48494 * 109.47282 * 119.99902 * 16 14 12
19 19 H 1.48501 * 109.46755 * 240.00142 * 16 14 12
20 20 C 1.46496 * 119.99999 * 359.97438 * 11 9 7
21 21 C 1.47199 * 109.47320 * 277.91174 * 20 11 9
22 22 N 5.51450 * 57.03543 * 169.38624 * 2 1 3
23 23 H 1.09006 * 109.46885 * 180.02562 * 1 2 3
24 24 H 1.08997 * 109.47258 * 299.99580 * 1 2 3
25 25 H 1.09003 * 109.47220 * 60.00180 * 1 2 3
26 26 H 1.08997 * 109.47258 * 240.00420 * 2 1 3
27 27 H 1.08992 * 109.46695 * 180.02562 * 3 2 1
28 28 H 1.09003 * 109.47081 * 299.99905 * 3 2 1
29 29 H 1.08997 * 109.46866 * 60.00180 * 3 2 1
30 30 H 1.09002 * 117.50412 * 145.01365 * 6 4 2
31 31 H 1.09005 * 117.49955 * 359.97438 * 6 4 2
32 32 H 0.96997 * 120.00724 * 179.97438 * 15 14 12
33 33 H 1.09004 * 109.47197 * 157.90957 * 20 11 9
34 34 H 1.08998 * 109.47188 * 37.91241 * 20 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 6 2.0400 -0.7212 1.2492
5 1 2.1270 -0.1061 2.1448
6 6 3.0741 -1.8312 1.0513
7 6 1.6358 -2.1852 1.4342
8 1 1.0069 -2.6350 0.6659
9 6 1.3885 -2.6663 2.8408
10 8 1.5125 -1.9015 3.7740
11 7 1.0295 -3.9465 3.0618
12 6 0.8050 -4.3843 4.3415
13 1 1.2569 -3.8684 5.1757
14 6 -0.0039 -5.4917 4.5650
15 7 -0.7133 -5.9967 3.5808
16 14 -0.0830 -6.2628 6.2646
17 1 0.8034 -5.5127 7.1902
18 1 -1.4796 -6.2126 6.7665
19 1 0.3650 -7.6766 6.1880
20 6 0.8792 -4.8701 1.9347
21 6 -0.4478 -4.6875 1.3242
22 7 -1.4706 -4.5475 0.8522
23 1 -0.3633 -1.0277 0.0005
24 1 -0.3633 0.5137 0.8900
25 1 -0.3634 0.5138 -0.8900
26 1 1.8933 -0.5137 -0.8900
27 1 3.1299 1.4426 -0.0005
28 1 1.6766 1.9564 -0.8900
29 1 1.6766 1.9563 0.8900
30 1 3.8416 -1.9464 1.8167
31 1 3.3909 -2.0480 0.0311
32 1 -1.2777 -6.7700 3.7367
33 1 0.9777 -5.8959 2.2898
34 1 1.6514 -4.6667 1.1928
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000274652089.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:19:06
Heat of formation + Delta-G solvation = -5.576499 kcal
Electronic energy + Delta-G solvation = -16843.566327 eV
Core-core repulsion = 14162.726211 eV
Total energy + Delta-G solvation = -2680.840116 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-40.97467 -38.63584 -37.46886 -36.15786 -34.20617 -33.57584 -29.24229 -28.03432
-27.30508 -24.61921 -23.66712 -20.98686 -20.24865 -19.69963 -18.41232 -17.83989
-16.75544 -16.19072 -15.78929 -15.54214 -14.98295 -14.82863 -14.73046 -13.98611
-13.84661 -13.59657 -13.39179 -13.27672 -13.03109 -12.98283 -12.93456 -12.42183
-12.20120 -12.12843 -12.07566 -12.01005 -11.52461 -11.15670 -11.06740 -10.83539
-10.42284 -9.89948 -8.38510 -6.04193 1.36517 1.45299 1.57644 1.75128
2.00111 2.24764 2.33928 2.86880 3.04564 3.12101 3.59321 3.77988
3.89591 3.96957 4.15581 4.37484 4.44158 4.49508 4.63363 4.71409
4.84189 4.90567 4.96555 4.97505 5.07124 5.13181 5.24644 5.34833
5.44321 5.44561 5.58404 6.05742 6.40638 6.98635 7.10731 7.34082
7.92526 8.64277
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.033401 B = 0.007250 C = 0.006528
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 838.085454 B = 3861.235540 C = 4287.904321
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.059 4.059
3 C -0.139 4.139
4 C -0.119 4.119
5 H 0.087 0.913
6 C -0.123 4.123
7 C -0.194 4.194
8 H 0.118 0.882
9 C 0.480 3.520
10 O -0.620 6.620
11 N -0.455 5.455
12 C -0.334 4.334
13 H 0.080 0.920
14 C 0.001 3.999
15 N -0.901 5.901
16 Si 0.991 3.009
17 H -0.272 1.272
18 H -0.288 1.288
19 H -0.262 1.262
20 C 0.226 3.774
21 C 0.260 3.740
22 N -0.509 5.509
23 H 0.034 0.966
24 H 0.038 0.962
25 H 0.074 0.926
26 H 0.091 0.909
27 H 0.066 0.934
28 H 0.070 0.930
29 H 0.044 0.956
30 H 0.091 0.909
31 H 0.138 0.862
32 H 0.274 0.726
33 H 0.128 0.872
34 H 0.131 0.869
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.079 4.626 -8.805 12.814
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.077 4.077
3 C -0.196 4.196
4 C -0.138 4.138
5 H 0.105 0.895
6 C -0.160 4.160
7 C -0.215 4.215
8 H 0.136 0.864
9 C 0.270 3.730
10 O -0.506 6.506
11 N -0.175 5.175
12 C -0.462 4.462
13 H 0.098 0.902
14 C -0.200 4.200
15 N -0.541 5.541
16 Si 0.816 3.184
17 H -0.196 1.196
18 H -0.215 1.215
19 H -0.186 1.186
20 C 0.099 3.901
21 C -0.058 4.058
22 N -0.190 5.190
23 H 0.053 0.947
24 H 0.057 0.943
25 H 0.093 0.907
26 H 0.110 0.890
27 H 0.085 0.915
28 H 0.089 0.911
29 H 0.063 0.937
30 H 0.110 0.890
31 H 0.156 0.844
32 H 0.084 0.916
33 H 0.146 0.854
34 H 0.149 0.851
Dipole moment (debyes) X Y Z Total
from point charges 6.504 5.016 -9.043 12.216
hybrid contribution -0.413 -0.692 1.535 1.734
sum 6.091 4.324 -7.508 10.591
Atomic orbital electron populations
1.21821 0.96080 1.00819 1.01636 1.20745 0.94744 0.96974 0.95280
1.21769 1.01635 0.94309 1.01920 1.22430 1.02303 0.88999 1.00034
0.89488 1.23187 0.89045 0.99769 1.04027 1.22151 1.03002 1.02028
0.94292 0.86398 1.20228 0.81133 0.81249 0.90353 1.90485 1.58162
1.55206 1.46757 1.43682 1.59968 1.07666 1.06137 1.19689 1.29317
1.12771 0.84419 0.90211 1.25983 0.93663 0.97655 1.02689 1.69840
1.26524 1.24519 1.33205 0.84887 0.77462 0.78486 0.77582 1.19615
1.21461 1.18639 1.19042 0.85294 0.98014 0.87740 1.29766 0.95442
0.90654 0.89897 1.80851 1.12394 1.11213 1.14538 0.94667 0.94296
0.90733 0.89031 0.91495 0.91068 0.93727 0.89024 0.84411 0.91598
0.85437 0.85137
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.89 9.03 71.98 0.65 -3.24 16
2 C -0.06 -1.38 3.07 -10.79 -0.03 -1.41 16
3 C -0.14 -2.69 9.18 71.98 0.66 -2.03 16
4 C -0.12 -3.57 4.66 -10.80 -0.05 -3.62 16
5 H 0.09 3.11 7.64 -2.38 -0.02 3.09 16
6 C -0.12 -3.18 9.88 30.59 0.30 -2.88 16
7 C -0.19 -6.71 4.01 -11.55 -0.05 -6.75 16
8 H 0.12 3.89 6.09 -2.38 -0.01 3.88 16
9 C 0.48 22.57 7.32 87.66 0.64 23.21 16
10 O -0.62 -34.34 15.96 -3.06 -0.05 -34.39 16
11 N -0.46 -21.84 2.61 -645.42 -1.68 -23.52 16
12 C -0.33 -17.81 9.28 84.04 0.78 -17.03 16
13 H 0.08 4.57 7.42 -2.91 -0.02 4.54 16
14 C 0.00 0.05 5.09 84.93 0.43 0.49 16
15 N -0.90 -45.61 9.18 21.66 0.20 -45.41 16
16 Si 0.99 41.08 29.57 68.60 2.03 43.11 16
17 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16
18 H -0.29 -12.20 7.11 99.48 0.71 -11.49 16
19 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16
20 C 0.23 8.93 4.80 84.57 0.41 9.34 16
21 C 0.26 11.48 12.64 89.45 1.13 12.61 16
22 N -0.51 -24.23 18.53 19.99 0.37 -23.86 16
23 H 0.03 1.07 7.29 -2.38 -0.02 1.05 16
24 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16
25 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16
26 H 0.09 1.76 7.90 -2.39 -0.02 1.74 16
27 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16
28 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16
29 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16
30 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16
31 H 0.14 2.45 8.05 -2.38 -0.02 2.43 16
32 H 0.27 13.36 8.31 -92.71 -0.77 12.59 16
33 H 0.13 5.21 6.38 -2.39 -0.02 5.20 16
34 H 0.13 3.82 7.10 -2.39 -0.02 3.80 16
Total: -1.00 -67.03 291.16 6.83 -60.20
By element:
Atomic # 1 Polarization: 14.11 SS G_CDS: 1.09 Total: 15.20 kcal
Atomic # 6 Polarization: 3.80 SS G_CDS: 4.87 Total: 8.67 kcal
Atomic # 7 Polarization: -91.68 SS G_CDS: -1.11 Total: -92.80 kcal
Atomic # 8 Polarization: -34.34 SS G_CDS: -0.05 Total: -34.39 kcal
Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal
Total: -67.03 6.83 -60.20 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000274652089.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 54.621 kcal
(2) G-P(sol) polarization free energy of solvation -67.030 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.409 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.832 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.197 kcal
(6) G-S(sol) free energy of system = (1) + (5) -5.576 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds