Wall clock time and date at job start Mon Mar 30 2020 03:38:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17396 * 1
3 3 C 1.47199 * 179.97438 * 2 1
4 4 N 1.46500 * 109.47018 * 188.88132 * 3 2 1
5 5 C 1.37098 * 120.00364 * 269.28753 * 4 3 2
6 6 H 1.07998 * 119.99741 * 317.85320 * 5 4 3
7 7 C 1.38949 * 120.00013 * 137.85781 * 5 4 3
8 8 N 1.31414 * 119.99832 * 159.52428 * 7 5 4
9 9 Si 1.86801 * 120.00138 * 339.51846 * 7 5 4
10 10 H 1.48507 * 109.46985 * 93.82708 * 9 7 5
11 11 H 1.48494 * 109.47332 * 213.82444 * 9 7 5
12 12 H 1.48500 * 109.46967 * 333.83059 * 9 7 5
13 13 C 1.34783 * 119.99521 * 89.28678 * 4 3 2
14 14 O 1.21287 * 119.99630 * 180.02562 * 13 4 3
15 15 C 1.50694 * 120.00152 * 359.97438 * 13 4 3
16 16 H 1.09002 * 109.90870 * 319.64810 * 15 13 4
17 17 N 1.47902 * 109.91675 * 198.54972 * 15 13 4
18 18 C 1.48531 * 105.81673 * 215.31809 * 17 15 13
19 19 C 1.54938 * 103.23142 * 39.20696 * 18 17 15
20 20 C 1.53995 * 109.91833 * 80.95990 * 15 13 4
21 21 H 1.09003 * 110.30508 * 239.49503 * 20 15 13
22 22 C 1.53000 * 110.30601 * 1.65717 * 20 15 13
23 23 H 4.40642 * 5.51505 * 179.97438 * 4 1 2
24 24 H 1.09004 * 109.47138 * 68.88821 * 3 2 1
25 25 H 1.08994 * 109.47396 * 308.88438 * 3 2 1
26 26 H 0.97000 * 119.99973 * 179.97438 * 8 7 5
27 27 H 1.00901 * 111.00024 * 335.82767 * 17 15 13
28 28 H 1.09005 * 110.66662 * 157.64289 * 18 17 15
29 29 H 1.09004 * 110.67113 * 280.60182 * 18 17 15
30 30 H 1.09002 * 110.72234 * 80.94395 * 19 18 17
31 31 H 1.09003 * 110.72167 * 204.05086 * 19 18 17
32 32 H 1.08997 * 109.46878 * 60.00575 * 22 20 15
33 33 H 1.09005 * 109.46748 * 179.97438 * 22 20 15
34 34 H 1.09003 * 109.47373 * 300.00450 * 22 20 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6459 0.0007 0.0000
4 7 3.1336 1.3655 0.2132
5 6 3.3757 2.1827 -0.8607
6 1 3.8669 1.7895 -1.7384
7 6 2.9891 3.5167 -0.8197
8 7 3.5487 4.3881 -1.6287
9 14 1.6738 4.0714 0.3852
10 1 2.3180 4.5620 1.6301
11 1 0.8750 5.1655 -0.2230
12 1 0.7828 2.9276 0.7065
13 6 3.3443 1.8179 1.4653
14 8 3.7477 2.9480 1.6419
15 6 3.0777 0.9199 2.6457
16 1 2.1656 0.3471 2.4778
17 7 2.9441 1.7307 3.8755
18 6 3.5390 0.9148 4.9649
19 6 4.7743 0.2679 4.2894
20 6 4.2686 -0.0327 2.8598
21 1 3.9417 -1.0698 2.7844
22 6 5.3688 0.2543 1.8360
23 1 -1.0503 -0.0003 -0.0002
24 1 3.0095 -0.3693 -0.9587
25 1 3.0096 -0.6442 0.7999
26 1 3.2786 5.3193 -1.6003
27 1 3.4246 2.6129 3.7809
28 1 3.8438 1.5486 5.7977
29 1 2.8373 0.1514 5.3010
30 1 5.6102 0.9670 4.2639
31 1 5.0573 -0.6511 4.8026
32 1 5.7111 1.2828 1.9493
33 1 6.2041 -0.4265 2.0000
34 1 4.9750 0.1111 0.8297
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000300854855.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:38:24
Heat of formation + Delta-G solvation = 42.295091 kcal
Electronic energy + Delta-G solvation = -17799.817393 eV
Core-core repulsion = 15121.053145 eV
Total energy + Delta-G solvation = -2678.764248 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-40.09077 -37.29575 -35.15517 -32.60447 -31.91837 -31.27995 -29.28643 -26.76011
-25.72930 -24.22128 -21.63545 -20.69485 -19.01816 -17.77783 -17.31829 -16.20010
-15.76584 -15.30234 -14.88385 -14.29989 -13.45923 -13.30366 -13.19215 -13.01366
-12.61426 -12.37208 -12.26787 -12.04861 -11.85107 -11.02192 -10.87141 -10.83833
-10.66557 -10.50212 -10.26884 -9.99258 -9.77692 -9.63587 -8.58112 -8.55469
-8.31172 -7.75017 -6.21452 -3.98566 3.14397 3.34775 3.37875 3.58036
3.69330 3.78898 4.36768 4.57185 4.64860 4.82504 4.92957 4.98073
5.23061 5.27864 5.51096 5.55122 5.61473 5.75463 5.81123 5.87701
5.96062 6.05322 6.08985 6.22015 6.25719 6.37917 6.45933 6.71781
7.00014 7.69328 7.82612 7.89888 8.14155 8.71202 8.84679 9.39559
9.73204 10.83758
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.023327 B = 0.011912 C = 0.010702
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1200.026402 B = 2350.031082 C = 2615.640366
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.220 4.220
2 C -0.181 4.181
3 C 0.201 3.799
4 N -0.456 5.456
5 C -0.352 4.352
6 H 0.097 0.903
7 C 0.096 3.904
8 N -0.863 5.863
9 Si 0.903 3.097
10 H -0.253 1.253
11 H -0.309 1.309
12 H -0.274 1.274
13 C 0.463 3.537
14 O -0.538 6.538
15 C 0.055 3.945
16 H 0.093 0.907
17 N -0.663 5.663
18 C 0.042 3.958
19 C -0.151 4.151
20 C -0.107 4.107
21 H 0.078 0.922
22 C -0.156 4.156
23 H 0.210 0.790
24 H 0.098 0.902
25 H 0.086 0.914
26 H 0.272 0.728
27 H 0.353 0.647
28 H 0.072 0.928
29 H 0.076 0.924
30 H 0.069 0.931
31 H 0.070 0.930
32 H 0.064 0.936
33 H 0.050 0.950
34 H 0.073 0.927
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.579 -10.805 8.905 14.013
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.238 4.238
2 C -0.182 4.182
3 C 0.078 3.922
4 N -0.178 5.178
5 C -0.478 4.478
6 H 0.114 0.886
7 C -0.114 4.114
8 N -0.497 5.497
9 Si 0.733 3.267
10 H -0.178 1.178
11 H -0.238 1.238
12 H -0.199 1.199
13 C 0.253 3.747
14 O -0.419 6.419
15 C -0.059 4.059
16 H 0.111 0.889
17 N -0.295 5.295
18 C -0.088 4.088
19 C -0.190 4.190
20 C -0.128 4.128
21 H 0.096 0.904
22 C -0.213 4.213
23 H 0.227 0.773
24 H 0.116 0.884
25 H 0.103 0.897
26 H 0.082 0.918
27 H 0.174 0.826
28 H 0.090 0.910
29 H 0.095 0.905
30 H 0.088 0.912
31 H 0.089 0.911
32 H 0.083 0.917
33 H 0.069 0.931
34 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges -1.016 -10.148 9.029 13.621
hybrid contribution -0.087 0.333 0.188 0.393
sum -1.103 -9.814 9.218 13.509
Atomic orbital electron populations
1.24746 0.95801 1.00968 1.02335 1.23972 0.95265 0.99765 0.99228
1.18798 0.83211 0.87555 1.02641 1.43637 1.57314 1.11504 1.05329
1.18798 1.40981 0.91389 0.96584 0.88572 1.25275 0.95253 0.95638
0.95205 1.69754 1.38530 1.02995 1.38432 0.86512 0.79832 0.78105
0.82278 1.17835 1.23804 1.19878 1.20173 0.81653 0.88593 0.84326
1.90528 1.48177 1.19326 1.83870 1.22489 0.98369 0.94253 0.90828
0.88892 1.62812 1.57676 1.06621 1.02359 1.23103 0.93977 0.97037
0.94636 1.23192 0.99147 1.01267 0.95392 1.22296 0.95748 0.99205
0.95540 0.90371 1.22076 0.97440 1.02277 0.99507 0.77260 0.88420
0.89651 0.91816 0.82592 0.90961 0.90537 0.91186 0.91099 0.91657
0.93125 0.90819
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.22 -3.87 19.25 29.55 0.57 -3.30 16
2 C -0.18 -3.48 13.08 -37.12 -0.49 -3.97 16
3 C 0.20 3.75 4.52 -6.83 -0.03 3.72 16
4 N -0.46 -10.76 1.36 -117.94 -0.16 -10.92 16
5 C -0.35 -9.82 9.69 -14.93 -0.14 -9.97 16
6 H 0.10 2.77 8.06 -52.49 -0.42 2.34 16
7 C 0.10 2.86 4.81 -17.47 -0.08 2.77 16
8 N -0.86 -26.53 13.96 55.50 0.77 -25.76 16
9 Si 0.90 24.95 24.91 -169.99 -4.23 20.72 16
10 H -0.25 -7.25 6.26 56.52 0.35 -6.89 16
11 H -0.31 -8.42 7.11 56.52 0.40 -8.02 16
12 H -0.27 -7.50 7.11 56.52 0.40 -7.10 16
13 C 0.46 10.83 3.07 -10.99 -0.03 10.80 16
14 O -0.54 -14.62 10.93 5.55 0.06 -14.56 16
15 C 0.05 1.02 2.90 -67.80 -0.20 0.82 16
16 H 0.09 1.73 6.78 -51.93 -0.35 1.38 16
17 N -0.66 -12.11 7.39 -104.34 -0.77 -12.88 16
18 C 0.04 0.58 7.55 -1.90 -0.01 0.56 16
19 C -0.15 -1.96 6.61 -24.87 -0.16 -2.13 16
20 C -0.11 -1.61 2.65 -89.27 -0.24 -1.85 16
21 H 0.08 1.00 7.93 -51.93 -0.41 0.58 16
22 C -0.16 -2.54 7.84 37.16 0.29 -2.25 16
23 H 0.21 2.84 7.80 -54.08 -0.42 2.42 16
24 H 0.10 1.68 8.03 -51.93 -0.42 1.26 16
25 H 0.09 1.32 5.20 -51.93 -0.27 1.05 16
26 H 0.27 7.93 8.31 -40.82 -0.34 7.59 16
27 H 0.35 7.12 7.32 -39.29 -0.29 6.83 16
28 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16
29 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16
30 H 0.07 0.96 7.84 -51.93 -0.41 0.55 16
31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16
32 H 0.06 1.26 7.42 -51.93 -0.39 0.87 16
33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16
34 H 0.07 1.29 5.29 -51.93 -0.27 1.01 16
LS Contribution 273.55 15.07 4.12 4.12
Total: -1.00 -33.35 273.55 -5.26 -38.62
By element:
Atomic # 1 Polarization: 9.96 SS G_CDS: -4.52 Total: 5.43 kcal
Atomic # 6 Polarization: -4.25 SS G_CDS: -0.53 Total: -4.78 kcal
Atomic # 7 Polarization: -49.40 SS G_CDS: -0.16 Total: -49.56 kcal
Atomic # 8 Polarization: -14.62 SS G_CDS: 0.06 Total: -14.56 kcal
Atomic # 14 Polarization: 24.95 SS G_CDS: -4.23 Total: 20.72 kcal
Total LS contribution 4.12 Total: 4.12 kcal
Total: -33.35 -5.26 -38.62 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000300854855.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 80.912 kcal
(2) G-P(sol) polarization free energy of solvation -33.354 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.558 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.263 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.617 kcal
(6) G-S(sol) free energy of system = (1) + (5) 42.295 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds