Wall clock time and date at job start Mon Mar 30 2020 03:38:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17396 * 1
3 3 C 1.47199 * 179.97438 * 2 1
4 4 N 1.46500 * 109.47018 * 188.88132 * 3 2 1
5 5 C 1.37098 * 120.00364 * 269.28753 * 4 3 2
6 6 H 1.07998 * 119.99741 * 317.85320 * 5 4 3
7 7 C 1.38949 * 120.00013 * 137.85781 * 5 4 3
8 8 N 1.31414 * 119.99832 * 159.52428 * 7 5 4
9 9 Si 1.86801 * 120.00138 * 339.51846 * 7 5 4
10 10 H 1.48507 * 109.46985 * 93.82708 * 9 7 5
11 11 H 1.48494 * 109.47332 * 213.82444 * 9 7 5
12 12 H 1.48500 * 109.46967 * 333.83059 * 9 7 5
13 13 C 1.34783 * 119.99521 * 89.28678 * 4 3 2
14 14 O 1.21287 * 119.99630 * 180.02562 * 13 4 3
15 15 C 1.50694 * 120.00152 * 359.97438 * 13 4 3
16 16 H 1.09002 * 109.90870 * 319.64810 * 15 13 4
17 17 N 1.47902 * 109.91675 * 198.54972 * 15 13 4
18 18 C 1.48531 * 105.81673 * 215.31809 * 17 15 13
19 19 C 1.54938 * 103.23142 * 39.20696 * 18 17 15
20 20 C 1.53995 * 109.91833 * 80.95990 * 15 13 4
21 21 H 1.09003 * 110.30508 * 239.49503 * 20 15 13
22 22 C 1.53000 * 110.30601 * 1.65717 * 20 15 13
23 23 H 4.40642 * 5.51505 * 179.97438 * 4 1 2
24 24 H 1.09004 * 109.47138 * 68.88821 * 3 2 1
25 25 H 1.08994 * 109.47396 * 308.88438 * 3 2 1
26 26 H 0.97000 * 119.99973 * 179.97438 * 8 7 5
27 27 H 1.00901 * 111.00024 * 335.82767 * 17 15 13
28 28 H 1.09005 * 110.66662 * 157.64289 * 18 17 15
29 29 H 1.09004 * 110.67113 * 280.60182 * 18 17 15
30 30 H 1.09002 * 110.72234 * 80.94395 * 19 18 17
31 31 H 1.09003 * 110.72167 * 204.05086 * 19 18 17
32 32 H 1.08997 * 109.46878 * 60.00575 * 22 20 15
33 33 H 1.09005 * 109.46748 * 179.97438 * 22 20 15
34 34 H 1.09003 * 109.47373 * 300.00450 * 22 20 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6459 0.0007 0.0000
4 7 3.1336 1.3655 0.2132
5 6 3.3757 2.1827 -0.8607
6 1 3.8669 1.7895 -1.7384
7 6 2.9891 3.5167 -0.8197
8 7 3.5487 4.3881 -1.6287
9 14 1.6738 4.0714 0.3852
10 1 2.3180 4.5620 1.6301
11 1 0.8750 5.1655 -0.2230
12 1 0.7828 2.9276 0.7065
13 6 3.3443 1.8179 1.4653
14 8 3.7477 2.9480 1.6419
15 6 3.0777 0.9199 2.6457
16 1 2.1656 0.3471 2.4778
17 7 2.9441 1.7307 3.8755
18 6 3.5390 0.9148 4.9649
19 6 4.7743 0.2679 4.2894
20 6 4.2686 -0.0327 2.8598
21 1 3.9417 -1.0698 2.7844
22 6 5.3688 0.2543 1.8360
23 1 -1.0503 -0.0003 -0.0002
24 1 3.0095 -0.3693 -0.9587
25 1 3.0096 -0.6442 0.7999
26 1 3.2786 5.3193 -1.6003
27 1 3.4246 2.6129 3.7809
28 1 3.8438 1.5486 5.7977
29 1 2.8373 0.1514 5.3010
30 1 5.6102 0.9670 4.2639
31 1 5.0573 -0.6511 4.8026
32 1 5.7111 1.2828 1.9493
33 1 6.2041 -0.4265 2.0000
34 1 4.9750 0.1111 0.8297
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000300854855.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:38:24
Heat of formation + Delta-G solvation = 17.638073 kcal
Electronic energy + Delta-G solvation = -17800.886601 eV
Core-core repulsion = 15121.053145 eV
Total energy + Delta-G solvation = -2679.833457 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-41.70853 -38.78681 -36.95753 -34.59321 -33.41804 -32.78043 -30.64421 -28.41779
-27.18773 -25.94998 -23.04402 -22.10407 -20.67745 -19.36737 -19.00192 -17.76125
-17.26418 -17.04814 -16.53939 -15.89377 -15.25979 -14.79327 -14.69876 -14.53530
-14.44759 -13.90625 -13.61372 -13.58197 -13.51109 -13.02694 -12.45691 -12.21769
-12.10641 -11.95928 -11.82721 -11.64896 -11.38265 -11.06030 -10.77740 -10.43179
-9.76921 -9.64757 -8.47623 -6.20656 1.16559 1.33747 1.45269 1.69968
1.92807 1.95832 2.38201 2.70912 3.06754 3.29887 3.61487 3.66154
3.75246 3.88879 4.14271 4.38804 4.44535 4.46399 4.55657 4.64428
4.72908 4.79371 4.94032 5.01504 5.09822 5.12454 5.25208 5.40623
5.64996 5.69902 5.86033 6.23300 6.66854 6.76354 6.84754 7.26692
7.79037 8.61484
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.023327 B = 0.011912 C = 0.010702
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1200.026402 B = 2350.031082 C = 2615.640366
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.228 4.228
3 C 0.202 3.798
4 N -0.469 5.469
5 C -0.342 4.342
6 H 0.078 0.922
7 C 0.051 3.949
8 N -0.905 5.905
9 Si 0.951 3.049
10 H -0.275 1.275
11 H -0.308 1.308
12 H -0.268 1.268
13 C 0.463 3.537
14 O -0.582 6.582
15 C 0.059 3.941
16 H 0.101 0.899
17 N -0.683 5.683
18 C 0.042 3.958
19 C -0.143 4.143
20 C -0.103 4.103
21 H 0.116 0.884
22 C -0.152 4.152
23 H 0.246 0.754
24 H 0.107 0.893
25 H 0.121 0.879
26 H 0.272 0.728
27 H 0.338 0.662
28 H 0.086 0.914
29 H 0.098 0.902
30 H 0.057 0.943
31 H 0.108 0.892
32 H 0.024 0.976
33 H 0.081 0.919
34 H 0.057 0.943
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.493 -13.696 10.877 17.553
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.217 4.217
2 C -0.229 4.229
3 C 0.080 3.920
4 N -0.191 5.191
5 C -0.469 4.469
6 H 0.095 0.905
7 C -0.154 4.154
8 N -0.543 5.543
9 Si 0.782 3.218
10 H -0.202 1.202
11 H -0.237 1.237
12 H -0.193 1.193
13 C 0.254 3.746
14 O -0.466 6.466
15 C -0.055 4.055
16 H 0.119 0.881
17 N -0.314 5.314
18 C -0.087 4.087
19 C -0.181 4.181
20 C -0.123 4.123
21 H 0.134 0.866
22 C -0.209 4.209
23 H 0.262 0.738
24 H 0.125 0.875
25 H 0.138 0.862
26 H 0.081 0.919
27 H 0.157 0.843
28 H 0.105 0.895
29 H 0.116 0.884
30 H 0.075 0.925
31 H 0.126 0.874
32 H 0.044 0.956
33 H 0.100 0.900
34 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges -1.952 -13.093 11.005 17.215
hybrid contribution 0.228 1.119 -0.380 1.204
sum -1.723 -11.973 10.625 16.100
Atomic orbital electron populations
1.25681 0.96819 0.98602 1.00549 1.24186 0.95929 1.01765 1.01011
1.18934 0.83592 0.84857 1.04607 1.43742 1.58052 1.12861 1.04418
1.18767 1.39480 0.91718 0.96921 0.90471 1.25820 0.96872 0.96332
0.96386 1.69827 1.40543 1.03272 1.40649 0.85742 0.78330 0.77741
0.80028 1.20176 1.23691 1.19265 1.21095 0.79569 0.88499 0.85434
1.90495 1.49721 1.21684 1.84736 1.22543 1.00330 0.93839 0.88757
0.88115 1.62879 1.58514 1.06642 1.03327 1.23286 0.94520 0.97219
0.93631 1.23160 0.98305 1.02614 0.94071 1.22385 0.93606 1.00039
0.96276 0.86603 1.22015 0.99112 1.00596 0.99208 0.73789 0.87527
0.86155 0.91912 0.84335 0.89546 0.88402 0.92466 0.87373 0.95645
0.89970 0.92420
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.20 -6.32 19.25 74.32 1.43 -4.89 16
2 C -0.23 -8.21 13.08 31.13 0.41 -7.80 16
3 C 0.20 7.17 4.52 84.57 0.38 7.55 16
4 N -0.47 -21.98 1.36 -645.43 -0.88 -22.87 16
5 C -0.34 -19.49 9.69 84.04 0.81 -18.68 16
6 H 0.08 4.59 8.06 -2.91 -0.02 4.57 16
7 C 0.05 3.10 4.81 84.93 0.41 3.50 16
8 N -0.91 -57.71 13.96 21.66 0.30 -57.41 16
9 Si 0.95 52.90 24.91 68.60 1.71 54.60 16
10 H -0.27 -16.13 6.26 99.48 0.62 -15.51 16
11 H -0.31 -16.71 7.11 99.48 0.71 -16.00 16
12 H -0.27 -14.36 7.11 99.48 0.71 -13.65 16
13 C 0.46 21.52 3.07 87.65 0.27 21.79 16
14 O -0.58 -32.42 10.93 -3.05 -0.03 -32.46 16
15 C 0.06 2.07 2.90 44.31 0.13 2.20 16
16 H 0.10 3.41 6.78 -2.39 -0.02 3.39 16
17 N -0.68 -23.72 7.39 -484.02 -3.58 -27.30 16
18 C 0.04 0.99 7.55 86.65 0.65 1.65 16
19 C -0.14 -3.14 6.61 31.80 0.21 -2.93 16
20 C -0.10 -2.70 2.65 -9.92 -0.03 -2.73 16
21 H 0.12 2.26 7.93 -2.39 -0.02 2.24 16
22 C -0.15 -4.67 7.84 71.98 0.56 -4.11 16
23 H 0.25 5.55 7.80 -4.40 -0.03 5.51 16
24 H 0.11 3.53 8.03 -2.39 -0.02 3.51 16
25 H 0.12 3.33 5.20 -2.39 -0.01 3.32 16
26 H 0.27 16.47 8.31 -92.71 -0.77 15.70 16
27 H 0.34 13.59 7.32 -89.69 -0.66 12.93 16
28 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16
29 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16
30 H 0.06 1.42 7.84 -2.39 -0.02 1.40 16
31 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16
32 H 0.02 0.96 7.42 -2.39 -0.02 0.94 16
33 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16
34 H 0.06 1.94 5.29 -2.39 -0.01 1.93 16
Total: -1.00 -75.43 273.55 3.12 -72.31
By element:
Atomic # 1 Polarization: 17.19 SS G_CDS: 0.36 Total: 17.55 kcal
Atomic # 6 Polarization: -9.68 SS G_CDS: 5.24 Total: -4.44 kcal
Atomic # 7 Polarization: -103.42 SS G_CDS: -4.15 Total: -107.57 kcal
Atomic # 8 Polarization: -32.42 SS G_CDS: -0.03 Total: -32.46 kcal
Atomic # 14 Polarization: 52.90 SS G_CDS: 1.71 Total: 54.60 kcal
Total: -75.43 3.12 -72.31 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000300854855.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 89.949 kcal
(2) G-P(sol) polarization free energy of solvation -75.435 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.514 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.124 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.311 kcal
(6) G-S(sol) free energy of system = (1) + (5) 17.638 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds