Wall clock time and date at job start Mon Mar 30 2020 03:38:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17400 * 1
3 3 C 1.47201 * 179.97438 * 2 1
4 4 N 1.46497 * 109.47109 * 293.81061 * 3 2 1
5 5 C 1.37101 * 119.99721 * 84.20108 * 4 3 2
6 6 H 1.08000 * 119.99896 * 165.85443 * 5 4 3
7 7 C 1.38946 * 120.00112 * 345.85437 * 5 4 3
8 8 N 1.31412 * 120.00194 * 359.59653 * 7 5 4
9 9 Si 1.86806 * 120.00105 * 179.59983 * 7 5 4
10 10 H 1.48494 * 109.46961 * 89.99730 * 9 7 5
11 11 H 1.48498 * 109.47049 * 209.99812 * 9 7 5
12 12 H 1.48499 * 109.46928 * 329.99746 * 9 7 5
13 13 C 1.34778 * 120.00225 * 264.19760 * 4 3 2
14 14 O 1.21294 * 119.99876 * 184.73039 * 13 4 3
15 15 C 1.50698 * 119.99987 * 4.73428 * 13 4 3
16 16 H 1.08998 * 110.06499 * 30.49528 * 15 13 4
17 17 N 1.47895 * 109.91922 * 151.70320 * 15 13 4
18 18 C 1.48535 * 105.82350 * 144.68072 * 17 15 13
19 19 C 1.54941 * 103.22352 * 320.79474 * 18 17 15
20 20 C 1.53997 * 109.91619 * 269.29247 * 15 13 4
21 21 H 1.09003 * 110.30826 * 120.50053 * 20 15 13
22 22 C 1.53005 * 110.30943 * 358.33774 * 20 15 13
23 23 H 4.40641 * 5.51390 * 180.02562 * 4 1 2
24 24 H 1.09001 * 109.46643 * 173.81220 * 3 2 1
25 25 H 1.09002 * 109.47267 * 53.81315 * 3 2 1
26 26 H 0.96999 * 120.00480 * 179.97438 * 8 7 5
27 27 H 1.00900 * 110.99769 * 24.16658 * 17 15 13
28 28 H 1.08994 * 110.66346 * 79.22521 * 18 17 15
29 29 H 1.08994 * 110.66714 * 202.35958 * 18 17 15
30 30 H 1.09002 * 110.72162 * 155.77241 * 19 18 17
31 31 H 1.08999 * 110.72303 * 279.05283 * 19 18 17
32 32 H 1.09001 * 109.46887 * 300.18357 * 22 20 15
33 33 H 1.09006 * 109.47153 * 60.17665 * 22 20 15
34 34 H 1.08998 * 109.46885 * 180.18018 * 22 20 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 7 3.1346 -0.5567 1.2636
5 6 3.2506 -1.9145 1.4145
6 1 3.8156 -2.3196 2.2410
7 6 2.6412 -2.7692 0.5043
8 7 1.9470 -2.2764 -0.4968
9 14 2.8085 -4.6191 0.7036
10 1 1.6981 -5.1284 1.5476
11 1 2.7535 -5.2677 -0.6311
12 1 4.1071 -4.9315 1.3526
13 6 3.4701 0.2652 2.2777
14 8 3.9550 -0.1900 3.2921
15 6 3.2427 1.7495 2.1514
16 1 2.3806 1.9428 1.5131
17 7 3.0223 2.3411 3.4888
18 6 3.6500 3.6866 3.4449
19 6 4.9443 3.4474 2.6275
20 6 4.4947 2.4235 1.5601
21 1 4.2463 2.9323 0.6286
22 6 5.5943 1.3863 1.3229
23 1 -1.0499 -0.0002 0.0001
24 1 3.0088 1.0225 -0.1108
25 1 3.0096 -0.6059 -0.8294
26 1 1.5219 -2.8731 -1.1325
27 1 3.4390 1.7711 4.2095
28 1 2.9996 4.3981 2.9362
29 1 3.8886 4.0328 4.4505
30 1 5.2802 4.3720 2.1578
31 1 5.7273 3.0277 3.2590
32 1 5.8557 0.9113 2.2685
33 1 5.2363 0.6307 0.6235
34 1 6.4741 1.8780 0.9078
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000300854857.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:38:26
Heat of formation + Delta-G solvation = 40.751046 kcal
Electronic energy + Delta-G solvation = -17515.866317 eV
Core-core repulsion = 14837.035114 eV
Total energy + Delta-G solvation = -2678.831203 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-39.79666 -37.14718 -35.14139 -32.03826 -31.60778 -31.10385 -29.12423 -26.46663
-25.53320 -24.38485 -21.68678 -20.62909 -18.28920 -17.88219 -16.75451 -16.33043
-15.59753 -15.35416 -14.35121 -14.11500 -13.76495 -13.24883 -12.99646 -12.70730
-12.42028 -12.23182 -12.02425 -11.68169 -11.27726 -11.09296 -10.90746 -10.71802
-10.55438 -10.50366 -10.38647 -10.31481 -9.49144 -9.17708 -8.69413 -8.43960
-8.20943 -7.91183 -6.24904 -3.88552 3.14793 3.24280 3.28619 3.66043
3.92324 4.14783 4.27233 4.62410 4.86012 4.93229 5.10993 5.13928
5.35185 5.59774 5.63935 5.66111 5.80407 5.87482 5.95238 6.04275
6.19333 6.26787 6.30035 6.37908 6.50155 6.75601 6.99113 7.12453
7.18461 7.53777 7.79889 8.01203 8.42071 8.96748 9.11275 9.34847
9.86050 10.67796
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.031515 B = 0.008780 C = 0.007895
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 888.266407 B = 3188.407406 C = 3545.485232
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.281 4.281
2 C -0.092 4.092
3 C 0.232 3.768
4 N -0.440 5.440
5 C -0.303 4.303
6 H 0.104 0.896
7 C 0.027 3.973
8 N -0.877 5.877
9 Si 0.931 3.069
10 H -0.278 1.278
11 H -0.283 1.283
12 H -0.271 1.271
13 C 0.460 3.540
14 O -0.587 6.587
15 C 0.060 3.940
16 H 0.093 0.907
17 N -0.659 5.659
18 C 0.042 3.958
19 C -0.151 4.151
20 C -0.109 4.109
21 H 0.077 0.923
22 C -0.153 4.153
23 H 0.196 0.804
24 H 0.054 0.946
25 H 0.124 0.876
26 H 0.268 0.732
27 H 0.351 0.649
28 H 0.076 0.924
29 H 0.071 0.929
30 H 0.069 0.931
31 H 0.068 0.932
32 H 0.065 0.935
33 H 0.067 0.933
34 H 0.048 0.952
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.040 8.770 -0.484 9.294
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.301 4.301
2 C -0.094 4.094
3 C 0.109 3.891
4 N -0.158 5.158
5 C -0.431 4.431
6 H 0.122 0.878
7 C -0.175 4.175
8 N -0.517 5.517
9 Si 0.758 3.242
10 H -0.205 1.205
11 H -0.209 1.209
12 H -0.195 1.195
13 C 0.248 3.752
14 O -0.472 6.472
15 C -0.053 4.053
16 H 0.111 0.889
17 N -0.290 5.290
18 C -0.088 4.088
19 C -0.190 4.190
20 C -0.129 4.129
21 H 0.095 0.905
22 C -0.210 4.210
23 H 0.213 0.787
24 H 0.072 0.928
25 H 0.142 0.858
26 H 0.079 0.921
27 H 0.171 0.829
28 H 0.094 0.906
29 H 0.089 0.911
30 H 0.087 0.913
31 H 0.087 0.913
32 H 0.084 0.916
33 H 0.086 0.914
34 H 0.067 0.933
Dipole moment (debyes) X Y Z Total
from point charges 2.501 8.592 -0.236 8.952
hybrid contribution 0.514 -1.191 -0.187 1.310
sum 3.015 7.401 -0.423 8.003
Atomic orbital electron populations
1.24180 0.95336 1.07798 1.02746 1.23036 0.94214 0.94294 0.97906
1.18580 0.84485 0.96164 0.89862 1.43685 1.55469 1.06171 1.10448
1.19750 1.31059 0.79818 1.12426 0.87784 1.25315 0.95534 1.00684
0.95921 1.69910 1.32729 1.34575 1.14486 0.85838 0.78847 0.82029
0.77456 1.20451 1.20904 1.19520 1.19834 0.84030 0.87487 0.83856
1.90487 1.49336 1.77030 1.30312 1.22430 0.97497 0.93309 0.92109
0.88863 1.62819 1.58073 1.03593 1.04543 1.23103 0.93241 0.92830
0.99611 1.23192 0.99000 0.98802 0.97989 1.22312 0.95694 0.96186
0.98729 0.90499 1.22005 0.97318 0.98497 1.03169 0.78698 0.92798
0.85841 0.92055 0.82937 0.90560 0.91060 0.91263 0.91327 0.91565
0.91426 0.93273
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.28 -6.14 19.25 29.55 0.57 -5.58 16
2 C -0.09 -2.15 10.72 -37.12 -0.40 -2.55 16
3 C 0.23 5.21 4.31 -6.83 -0.03 5.18 16
4 N -0.44 -10.97 2.14 -117.93 -0.25 -11.22 16
5 C -0.30 -8.24 9.47 -14.93 -0.14 -8.39 16
6 H 0.10 2.98 7.23 -52.49 -0.38 2.60 16
7 C 0.03 0.71 5.36 -17.47 -0.09 0.61 16
8 N -0.88 -22.59 8.05 55.50 0.45 -22.14 16
9 Si 0.93 20.78 29.55 -169.99 -5.02 15.76 16
10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16
11 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16
12 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16
13 C 0.46 10.94 4.64 -10.99 -0.05 10.89 16
14 O -0.59 -15.63 14.68 5.55 0.08 -15.55 16
15 C 0.06 1.17 2.89 -67.80 -0.20 0.97 16
16 H 0.09 1.85 6.54 -51.93 -0.34 1.51 16
17 N -0.66 -12.03 7.39 -104.35 -0.77 -12.80 16
18 C 0.04 0.59 7.55 -1.89 -0.01 0.57 16
19 C -0.15 -2.04 6.61 -24.87 -0.16 -2.21 16
20 C -0.11 -1.73 2.99 -89.26 -0.27 -2.00 16
21 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16
22 C -0.15 -2.61 7.93 37.16 0.29 -2.31 16
23 H 0.20 3.53 7.80 -54.09 -0.42 3.11 16
24 H 0.05 1.04 5.90 -51.93 -0.31 0.73 16
25 H 0.12 2.93 6.32 -51.93 -0.33 2.60 16
26 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16
27 H 0.35 6.89 7.42 -39.29 -0.29 6.60 16
28 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16
29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16
30 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16
31 H 0.07 0.96 7.84 -51.93 -0.41 0.55 16
32 H 0.07 1.28 7.04 -51.93 -0.37 0.92 16
33 H 0.07 1.28 6.52 -51.93 -0.34 0.94 16
34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16
LS Contribution 276.46 15.07 4.17 4.17
Total: -1.00 -29.42 276.46 -6.27 -35.69
By element:
Atomic # 1 Polarization: 15.33 SS G_CDS: -4.43 Total: 10.90 kcal
Atomic # 6 Polarization: -4.32 SS G_CDS: -0.49 Total: -4.81 kcal
Atomic # 7 Polarization: -45.58 SS G_CDS: -0.58 Total: -46.16 kcal
Atomic # 8 Polarization: -15.63 SS G_CDS: 0.08 Total: -15.55 kcal
Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal
Total LS contribution 4.17 Total: 4.17 kcal
Total: -29.42 -6.27 -35.69 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000300854857.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 76.442 kcal
(2) G-P(sol) polarization free energy of solvation -29.420 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.022 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.271 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.691 kcal
(6) G-S(sol) free energy of system = (1) + (5) 40.751 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds