Wall clock time and date at job start Mon Mar 30 2020 03:38:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17400 * 1
3 3 C 1.47201 * 179.97438 * 2 1
4 4 N 1.46497 * 109.47109 * 293.81061 * 3 2 1
5 5 C 1.37101 * 119.99721 * 84.20108 * 4 3 2
6 6 H 1.08000 * 119.99896 * 165.85443 * 5 4 3
7 7 C 1.38946 * 120.00112 * 345.85437 * 5 4 3
8 8 N 1.31412 * 120.00194 * 359.59653 * 7 5 4
9 9 Si 1.86806 * 120.00105 * 179.59983 * 7 5 4
10 10 H 1.48494 * 109.46961 * 89.99730 * 9 7 5
11 11 H 1.48498 * 109.47049 * 209.99812 * 9 7 5
12 12 H 1.48499 * 109.46928 * 329.99746 * 9 7 5
13 13 C 1.34778 * 120.00225 * 264.19760 * 4 3 2
14 14 O 1.21294 * 119.99876 * 184.73039 * 13 4 3
15 15 C 1.50698 * 119.99987 * 4.73428 * 13 4 3
16 16 H 1.08998 * 110.06499 * 30.49528 * 15 13 4
17 17 N 1.47895 * 109.91922 * 151.70320 * 15 13 4
18 18 C 1.48535 * 105.82350 * 144.68072 * 17 15 13
19 19 C 1.54941 * 103.22352 * 320.79474 * 18 17 15
20 20 C 1.53997 * 109.91619 * 269.29247 * 15 13 4
21 21 H 1.09003 * 110.30826 * 120.50053 * 20 15 13
22 22 C 1.53005 * 110.30943 * 358.33774 * 20 15 13
23 23 H 4.40641 * 5.51390 * 180.02562 * 4 1 2
24 24 H 1.09001 * 109.46643 * 173.81220 * 3 2 1
25 25 H 1.09002 * 109.47267 * 53.81315 * 3 2 1
26 26 H 0.96999 * 120.00480 * 179.97438 * 8 7 5
27 27 H 1.00900 * 110.99769 * 24.16658 * 17 15 13
28 28 H 1.08994 * 110.66346 * 79.22521 * 18 17 15
29 29 H 1.08994 * 110.66714 * 202.35958 * 18 17 15
30 30 H 1.09002 * 110.72162 * 155.77241 * 19 18 17
31 31 H 1.08999 * 110.72303 * 279.05283 * 19 18 17
32 32 H 1.09001 * 109.46887 * 300.18357 * 22 20 15
33 33 H 1.09006 * 109.47153 * 60.17665 * 22 20 15
34 34 H 1.08998 * 109.46885 * 180.18018 * 22 20 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 7 3.1346 -0.5567 1.2636
5 6 3.2506 -1.9145 1.4145
6 1 3.8156 -2.3196 2.2410
7 6 2.6412 -2.7692 0.5043
8 7 1.9470 -2.2764 -0.4968
9 14 2.8085 -4.6191 0.7036
10 1 1.6981 -5.1284 1.5476
11 1 2.7535 -5.2677 -0.6311
12 1 4.1071 -4.9315 1.3526
13 6 3.4701 0.2652 2.2777
14 8 3.9550 -0.1900 3.2921
15 6 3.2427 1.7495 2.1514
16 1 2.3806 1.9428 1.5131
17 7 3.0223 2.3411 3.4888
18 6 3.6500 3.6866 3.4449
19 6 4.9443 3.4474 2.6275
20 6 4.4947 2.4235 1.5601
21 1 4.2463 2.9323 0.6286
22 6 5.5943 1.3863 1.3229
23 1 -1.0499 -0.0002 0.0001
24 1 3.0088 1.0225 -0.1108
25 1 3.0096 -0.6059 -0.8294
26 1 1.5219 -2.8731 -1.1325
27 1 3.4390 1.7711 4.2095
28 1 2.9996 4.3981 2.9362
29 1 3.8886 4.0328 4.4505
30 1 5.2802 4.3720 2.1578
31 1 5.7273 3.0277 3.2590
32 1 5.8557 0.9113 2.2685
33 1 5.2363 0.6307 0.6235
34 1 6.4741 1.8780 0.9078
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000300854857.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:38:26
Heat of formation + Delta-G solvation = 21.099188 kcal
Electronic energy + Delta-G solvation = -17516.718486 eV
Core-core repulsion = 14837.035114 eV
Total energy + Delta-G solvation = -2679.683372 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-41.42275 -38.71344 -37.03985 -33.90115 -33.19765 -32.73791 -30.50746 -28.27101
-27.07058 -26.12190 -23.07491 -22.01895 -19.91051 -19.73524 -18.46931 -18.09355
-17.07237 -16.95284 -16.12831 -15.71998 -15.48832 -14.61685 -14.49684 -14.26773
-14.16066 -13.69928 -13.57164 -13.28278 -13.11684 -12.90934 -12.46697 -12.18184
-12.14660 -11.97205 -11.80218 -11.64511 -11.37833 -10.97867 -10.52025 -10.28933
-9.85546 -9.59012 -8.21711 -5.93378 1.34690 1.39638 1.50807 1.87535
2.12599 2.32858 2.48535 3.04073 3.14895 3.39314 3.68231 3.80746
3.92137 4.03571 4.21504 4.47810 4.49205 4.54886 4.66226 4.74447
4.79593 4.95719 5.04112 5.11150 5.17324 5.23673 5.39140 5.44297
5.49162 5.79298 6.05679 6.32712 6.45962 7.13493 7.21446 7.43116
7.95497 8.67344
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.031515 B = 0.008780 C = 0.007895
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 888.266407 B = 3188.407406 C = 3545.485232
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.270 4.270
2 C -0.132 4.132
3 C 0.238 3.762
4 N -0.451 5.451
5 C -0.339 4.339
6 H 0.076 0.924
7 C -0.002 4.002
8 N -0.880 5.880
9 Si 0.988 3.012
10 H -0.281 1.281
11 H -0.268 1.268
12 H -0.273 1.273
13 C 0.455 3.545
14 O -0.626 6.626
15 C 0.066 3.934
16 H 0.090 0.910
17 N -0.675 5.675
18 C 0.042 3.958
19 C -0.141 4.141
20 C -0.107 4.107
21 H 0.104 0.896
22 C -0.146 4.146
23 H 0.228 0.772
24 H 0.084 0.916
25 H 0.107 0.893
26 H 0.270 0.730
27 H 0.339 0.661
28 H 0.093 0.907
29 H 0.091 0.909
30 H 0.105 0.895
31 H 0.060 0.940
32 H 0.034 0.966
33 H 0.042 0.958
34 H 0.080 0.920
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.759 10.356 -1.270 10.792
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.289 4.289
2 C -0.134 4.134
3 C 0.116 3.884
4 N -0.169 5.169
5 C -0.467 4.467
6 H 0.094 0.906
7 C -0.203 4.203
8 N -0.519 5.519
9 Si 0.813 3.187
10 H -0.207 1.207
11 H -0.193 1.193
12 H -0.198 1.198
13 C 0.245 3.755
14 O -0.513 6.513
15 C -0.048 4.048
16 H 0.108 0.892
17 N -0.306 5.306
18 C -0.087 4.087
19 C -0.180 4.180
20 C -0.127 4.127
21 H 0.122 0.878
22 C -0.203 4.203
23 H 0.245 0.755
24 H 0.102 0.898
25 H 0.124 0.876
26 H 0.081 0.919
27 H 0.157 0.843
28 H 0.112 0.888
29 H 0.109 0.891
30 H 0.123 0.877
31 H 0.079 0.921
32 H 0.053 0.947
33 H 0.061 0.939
34 H 0.099 0.901
Dipole moment (debyes) X Y Z Total
from point charges 2.209 10.212 -1.056 10.501
hybrid contribution 0.568 -1.662 0.074 1.758
sum 2.778 8.550 -0.982 9.043
Atomic orbital electron populations
1.25042 0.96350 1.06312 1.01208 1.23428 0.95008 0.95652 0.99321
1.18527 0.84526 0.97231 0.88151 1.43829 1.55727 1.05675 1.11627
1.19635 1.32687 0.81611 1.12749 0.90619 1.25951 0.94893 1.04055
0.95382 1.70049 1.32091 1.35523 1.14229 0.85004 0.78312 0.77593
0.77829 1.20739 1.19277 1.19822 1.20652 0.82519 0.89414 0.82932
1.90447 1.50797 1.78287 1.31795 1.22385 0.99067 0.90111 0.93207
0.89195 1.62857 1.59048 1.05203 1.03460 1.23287 0.93458 0.90691
1.01282 1.23151 0.98501 0.99301 0.97028 1.22388 0.93524 0.96214
1.00596 0.87806 1.21914 0.99075 0.98393 1.00964 0.75487 0.89787
0.87553 0.91875 0.84267 0.88822 0.89093 0.87702 0.92099 0.94721
0.93870 0.90109
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.27 -11.38 19.25 74.32 1.43 -9.95 16
2 C -0.13 -6.08 10.72 31.13 0.33 -5.74 16
3 C 0.24 10.74 4.31 84.57 0.36 11.10 16
4 N -0.45 -23.13 2.14 -645.42 -1.38 -24.51 16
5 C -0.34 -19.15 9.47 84.04 0.80 -18.36 16
6 H 0.08 4.59 7.23 -2.91 -0.02 4.57 16
7 C 0.00 -0.08 5.36 84.93 0.45 0.37 16
8 N -0.88 -45.33 8.05 21.66 0.17 -45.16 16
9 Si 0.99 43.01 29.55 68.60 2.03 45.04 16
10 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16
11 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16
12 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16
13 C 0.46 22.25 4.64 87.66 0.41 22.66 16
14 O -0.63 -34.90 14.68 -3.07 -0.05 -34.95 16
15 C 0.07 2.51 2.89 44.31 0.13 2.64 16
16 H 0.09 3.47 6.54 -2.39 -0.02 3.45 16
17 N -0.67 -24.04 7.39 -484.04 -3.58 -27.61 16
18 C 0.04 1.04 7.55 86.65 0.65 1.69 16
19 C -0.14 -3.36 6.61 31.80 0.21 -3.15 16
20 C -0.11 -3.18 2.99 -9.91 -0.03 -3.21 16
21 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16
22 C -0.15 -4.90 7.93 71.98 0.57 -4.33 16
23 H 0.23 7.60 7.80 -4.42 -0.03 7.56 16
24 H 0.08 3.18 5.90 -2.39 -0.01 3.16 16
25 H 0.11 5.12 6.32 -2.39 -0.02 5.11 16
26 H 0.27 13.31 8.31 -92.71 -0.77 12.54 16
27 H 0.34 13.46 7.42 -89.69 -0.67 12.79 16
28 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16
29 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16
30 H 0.10 1.81 8.14 -2.39 -0.02 1.80 16
31 H 0.06 1.56 7.84 -2.39 -0.02 1.54 16
32 H 0.03 1.36 7.04 -2.39 -0.02 1.34 16
33 H 0.04 1.64 6.52 -2.38 -0.02 1.62 16
34 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16
Total: -1.00 -65.41 276.46 2.95 -62.46
By element:
Atomic # 1 Polarization: 30.57 SS G_CDS: 0.44 Total: 31.01 kcal
Atomic # 6 Polarization: -11.60 SS G_CDS: 5.32 Total: -6.28 kcal
Atomic # 7 Polarization: -92.49 SS G_CDS: -4.79 Total: -97.28 kcal
Atomic # 8 Polarization: -34.90 SS G_CDS: -0.05 Total: -34.95 kcal
Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal
Total: -65.41 2.95 -62.46 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000300854857.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 83.558 kcal
(2) G-P(sol) polarization free energy of solvation -65.410 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.148 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.951 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.459 kcal
(6) G-S(sol) free energy of system = (1) + (5) 21.099 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds