Wall clock time and date at job start Mon Mar 30 2020 03:34:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17400 * 1
3 3 C 1.47205 * 179.97438 * 2 1
4 4 N 1.46500 * 109.46954 * 346.78546 * 3 2 1
5 5 C 1.37093 * 119.99990 * 264.13679 * 4 3 2
6 6 H 1.08004 * 120.00110 * 197.43232 * 5 4 3
7 7 C 1.38948 * 120.00439 * 17.43671 * 5 4 3
8 8 N 1.31412 * 119.99395 * 21.53042 * 7 5 4
9 9 Si 1.86791 * 120.00352 * 201.53556 * 7 5 4
10 10 H 1.48503 * 109.47243 * 359.97438 * 9 7 5
11 11 H 1.48505 * 109.47379 * 119.99885 * 9 7 5
12 12 H 1.48500 * 109.47139 * 239.99928 * 9 7 5
13 13 C 1.34783 * 119.99716 * 84.14495 * 4 3 2
14 14 O 1.21295 * 119.99635 * 180.02562 * 13 4 3
15 15 C 1.50696 * 119.99956 * 359.97438 * 13 4 3
16 16 C 1.53001 * 109.46694 * 180.02562 * 15 13 4
17 17 H 1.09000 * 110.78671 * 51.75556 * 16 15 13
18 18 C 1.54600 * 110.72382 * 175.00033 * 16 15 13
19 19 C 1.53991 * 105.14174 * 140.31523 * 18 16 15
20 20 N 1.47901 * 107.22406 * 1.12824 * 19 18 16
21 21 C 1.48812 * 105.68223 * 334.90408 * 20 19 18
22 22 H 4.40637 * 5.51448 * 180.02562 * 4 1 2
23 23 H 1.08998 * 109.46659 * 226.78560 * 3 2 1
24 24 H 1.09000 * 109.46682 * 106.78604 * 3 2 1
25 25 H 0.97005 * 119.99867 * 180.02562 * 8 7 5
26 26 H 1.09001 * 109.47280 * 60.00799 * 15 13 4
27 27 H 1.09003 * 109.47147 * 300.00152 * 15 13 4
28 28 H 1.09005 * 110.30937 * 21.39734 * 18 16 15
29 29 H 1.09001 * 110.39575 * 259.27929 * 18 16 15
30 30 H 1.09000 * 109.91723 * 120.58002 * 19 18 16
31 31 H 1.08999 * 109.91713 * 241.67490 * 19 18 16
32 32 H 1.00905 * 110.99740 * 95.28154 * 20 19 18
33 33 H 1.08998 * 110.51753 * 280.54770 * 21 20 19
34 34 H 1.08997 * 110.70175 * 157.49307 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6461 0.0007 0.0000
4 7 3.1350 -1.3438 0.3157
5 6 3.4779 -1.6634 1.6040
6 1 4.0908 -2.5308 1.8003
7 6 3.0371 -0.8716 2.6573
8 7 1.9853 -0.0991 2.5029
9 14 3.9394 -0.9052 4.2924
10 1 5.0817 -1.8504 4.2081
11 1 4.4444 0.4554 4.6072
12 1 3.0093 -1.3477 5.3621
13 6 3.2477 -2.2663 -0.6604
14 8 3.6520 -3.3796 -0.3989
15 6 2.8703 -1.9150 -2.0764
16 6 3.0899 -3.1306 -2.9792
17 1 2.5945 -4.0110 -2.5698
18 6 2.5946 -2.8423 -4.4150
19 6 3.6404 -3.4925 -5.3395
20 7 4.6517 -4.1355 -4.4727
21 6 4.6027 -3.3971 -3.1815
22 1 -1.0498 -0.0005 -0.0001
23 1 3.0090 0.7045 0.7490
24 1 3.0092 0.2976 -0.9839
25 1 1.6777 0.4540 3.2380
26 1 3.4900 -1.0879 -2.4230
27 1 1.8209 -1.6221 -2.1108
28 1 2.5500 -1.7675 -4.5912
29 1 1.6150 -3.2923 -4.5765
30 1 3.1630 -4.2414 -5.9714
31 1 4.1130 -2.7306 -5.9593
32 1 4.4429 -5.1133 -4.3374
33 1 5.1519 -2.4587 -3.2570
34 1 4.9969 -4.0108 -2.3716
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000300855029.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:34:06
Heat of formation + Delta-G solvation = 28.603783 kcal
Electronic energy + Delta-G solvation = -16853.337877 eV
Core-core repulsion = 14173.979929 eV
Total energy + Delta-G solvation = -2679.357948 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-39.16719 -37.77774 -35.13882 -32.32503 -31.47533 -31.17326 -28.95198 -26.72192
-26.01963 -24.01570 -21.53942 -20.05023 -18.80197 -17.86769 -16.71238 -16.52253
-15.79805 -14.83821 -14.60490 -14.41580 -13.82986 -13.66511 -13.50354 -12.67659
-12.37467 -12.23626 -11.76548 -11.67510 -11.41199 -11.21611 -11.05147 -10.87420
-10.52159 -10.44595 -10.31369 -10.23247 -9.37499 -9.26835 -8.90563 -8.47327
-8.37507 -7.85876 -6.33458 -3.85367 3.13344 3.25594 3.32311 3.67421
3.91954 4.03795 4.18088 4.44464 4.81210 4.92000 5.04193 5.17845
5.26587 5.43363 5.49908 5.68810 5.75145 5.87613 5.91034 6.01782
6.06859 6.13355 6.34885 6.37002 6.48835 6.65682 6.74392 6.90674
7.01449 7.49895 7.56563 8.06369 8.43104 8.78988 9.14551 9.37088
9.92587 10.67671
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.033641 B = 0.007003 C = 0.006024
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 832.123639 B = 3997.138444 C = 4647.329242
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.263 4.263
2 C -0.112 4.112
3 C 0.232 3.768
4 N -0.443 5.443
5 C -0.314 4.314
6 H 0.104 0.896
7 C 0.030 3.970
8 N -0.864 5.864
9 Si 0.919 3.081
10 H -0.268 1.268
11 H -0.280 1.280
12 H -0.283 1.283
13 C 0.452 3.548
14 O -0.583 6.583
15 C -0.121 4.121
16 C -0.100 4.100
17 H 0.080 0.920
18 C -0.151 4.151
19 C 0.042 3.958
20 N -0.679 5.679
21 C 0.052 3.948
22 H 0.199 0.801
23 H 0.109 0.891
24 H 0.062 0.938
25 H 0.267 0.733
26 H 0.077 0.923
27 H 0.079 0.921
28 H 0.069 0.931
29 H 0.064 0.936
30 H 0.060 0.940
31 H 0.071 0.929
32 H 0.334 0.666
33 H 0.074 0.926
34 H 0.087 0.913
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.002 0.468 -10.184 10.195
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.282 4.282
2 C -0.114 4.114
3 C 0.108 3.892
4 N -0.161 5.161
5 C -0.441 4.441
6 H 0.122 0.878
7 C -0.174 4.174
8 N -0.502 5.502
9 Si 0.746 3.254
10 H -0.192 1.192
11 H -0.206 1.206
12 H -0.209 1.209
13 C 0.241 3.759
14 O -0.467 6.467
15 C -0.162 4.162
16 C -0.120 4.120
17 H 0.098 0.902
18 C -0.190 4.190
19 C -0.088 4.088
20 N -0.305 5.305
21 C -0.077 4.077
22 H 0.216 0.784
23 H 0.127 0.873
24 H 0.080 0.920
25 H 0.078 0.922
26 H 0.095 0.905
27 H 0.097 0.903
28 H 0.088 0.912
29 H 0.082 0.918
30 H 0.078 0.922
31 H 0.090 0.910
32 H 0.149 0.851
33 H 0.092 0.908
34 H 0.105 0.895
Dipole moment (debyes) X Y Z Total
from point charges 0.754 0.373 -10.212 10.246
hybrid contribution -1.106 -0.012 1.435 1.812
sum -0.352 0.361 -8.776 8.791
Atomic orbital electron populations
1.24269 0.95382 1.02062 1.06453 1.23215 0.94392 0.98466 0.95299
1.18255 0.84218 0.87375 0.99330 1.43729 1.56064 1.08597 1.07729
1.19697 1.30073 1.13480 0.80890 0.87819 1.25281 0.95201 0.97407
0.99515 1.70101 1.19805 1.27212 1.33082 0.85981 0.79750 0.78122
0.81567 1.19217 1.20617 1.20949 1.20085 0.84063 0.85069 0.86730
1.90496 1.51098 1.21484 1.83665 1.21546 1.02352 0.98096 0.94163
1.22375 0.97666 0.98666 0.93325 0.90160 1.22893 0.99157 1.01555
0.95413 1.22699 0.91575 0.98493 0.96045 1.62914 1.48040 1.06634
1.12946 1.23216 0.94771 0.99327 0.90417 0.78421 0.87299 0.92033
0.92247 0.90468 0.90270 0.91213 0.91751 0.92167 0.91012 0.85126
0.90792 0.89468
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.26 -5.42 19.25 29.55 0.57 -4.85 16
2 C -0.11 -2.49 10.88 -37.12 -0.40 -2.90 16
3 C 0.23 5.07 4.91 -6.83 -0.03 5.04 16
4 N -0.44 -11.04 2.60 -117.93 -0.31 -11.35 16
5 C -0.31 -8.59 9.32 -14.94 -0.14 -8.73 16
6 H 0.10 3.00 7.39 -52.48 -0.39 2.61 16
7 C 0.03 0.78 4.86 -17.47 -0.08 0.69 16
8 N -0.86 -22.67 9.48 55.50 0.53 -22.14 16
9 Si 0.92 20.44 29.60 -169.99 -5.03 15.40 16
10 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16
11 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16
12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16
13 C 0.45 10.67 7.40 -10.98 -0.08 10.59 16
14 O -0.58 -15.50 14.50 5.54 0.08 -15.42 16
15 C -0.12 -2.18 3.68 -27.88 -0.10 -2.29 16
16 C -0.10 -1.62 2.62 -88.76 -0.23 -1.85 16
17 H 0.08 1.46 7.88 -51.93 -0.41 1.05 16
18 C -0.15 -1.94 6.51 -25.37 -0.17 -2.11 16
19 C 0.04 0.50 7.51 -2.76 -0.02 0.48 16
20 N -0.68 -9.39 7.54 -109.87 -0.83 -10.22 16
21 C 0.05 0.83 6.45 -1.74 -0.01 0.82 16
22 H 0.20 3.33 7.80 -54.10 -0.42 2.90 16
23 H 0.11 2.52 6.44 -51.93 -0.33 2.19 16
24 H 0.06 1.12 6.69 -51.93 -0.35 0.77 16
25 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16
26 H 0.08 1.24 7.27 -51.93 -0.38 0.87 16
27 H 0.08 1.42 7.50 -51.93 -0.39 1.03 16
28 H 0.07 0.85 7.85 -51.93 -0.41 0.44 16
29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16
30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16
32 H 0.33 4.24 8.92 -39.29 -0.35 3.89 16
33 H 0.07 1.19 7.94 -51.93 -0.41 0.78 16
34 H 0.09 1.59 7.41 -51.93 -0.38 1.20 16
LS Contribution 284.25 15.07 4.28 4.28
Total: -1.00 -30.14 284.25 -6.61 -36.75
By element:
Atomic # 1 Polarization: 12.44 SS G_CDS: -4.63 Total: 7.81 kcal
Atomic # 6 Polarization: -4.40 SS G_CDS: -0.71 Total: -5.11 kcal
Atomic # 7 Polarization: -43.11 SS G_CDS: -0.61 Total: -43.72 kcal
Atomic # 8 Polarization: -15.50 SS G_CDS: 0.08 Total: -15.42 kcal
Atomic # 14 Polarization: 20.44 SS G_CDS: -5.03 Total: 15.40 kcal
Total LS contribution 4.28 Total: 4.28 kcal
Total: -30.14 -6.61 -36.75 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000300855029.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 65.350 kcal
(2) G-P(sol) polarization free energy of solvation -30.138 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.212 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.608 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.746 kcal
(6) G-S(sol) free energy of system = (1) + (5) 28.604 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds