Wall clock time and date at job start Mon Mar 30 2020 03:34:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17405 * 1
3 3 C 1.47198 * 179.97438 * 2 1
4 4 N 1.46500 * 109.47068 * 123.24124 * 3 2 1
5 5 C 1.37099 * 119.99599 * 96.21266 * 4 3 2
6 6 H 1.08003 * 119.99351 * 159.16259 * 5 4 3
7 7 C 1.38942 * 120.00284 * 339.15287 * 5 4 3
8 8 N 1.31408 * 120.00409 * 350.04063 * 7 5 4
9 9 Si 1.86806 * 119.99958 * 170.03358 * 7 5 4
10 10 H 1.48505 * 109.46948 * 90.00532 * 9 7 5
11 11 H 1.48501 * 109.47239 * 210.00374 * 9 7 5
12 12 H 1.48497 * 109.47235 * 330.00502 * 9 7 5
13 13 C 1.34774 * 119.99958 * 276.20887 * 4 3 2
14 14 O 1.21293 * 119.99909 * 186.32056 * 13 4 3
15 15 C 1.50695 * 120.00032 * 6.32331 * 13 4 3
16 16 H 1.08999 * 110.54172 * 34.14766 * 15 13 4
17 17 C 1.54892 * 110.48900 * 156.76588 * 15 13 4
18 18 C 1.54882 * 102.91739 * 156.52543 * 17 15 13
19 19 C 1.54471 * 104.10381 * 322.30232 * 18 17 15
20 20 H 1.08998 * 110.12147 * 142.72865 * 19 18 17
21 21 N 1.46899 * 109.89710 * 264.07942 * 19 18 17
22 22 C 1.53876 * 106.68337 * 23.33999 * 19 18 17
23 23 H 4.40641 * 5.51460 * 179.97438 * 4 1 2
24 24 H 1.08998 * 109.46979 * 3.23910 * 3 2 1
25 25 H 1.09004 * 109.46984 * 243.24337 * 3 2 1
26 26 H 0.96996 * 120.00897 * 179.97438 * 8 7 5
27 27 H 1.09000 * 110.75250 * 274.93338 * 17 15 13
28 28 H 1.09005 * 110.75166 * 38.11723 * 17 15 13
29 29 H 1.09000 * 110.48737 * 80.83021 * 18 17 15
30 30 H 1.09001 * 110.48916 * 203.47353 * 18 17 15
31 31 H 1.00900 * 111.00374 * 297.19337 * 21 19 18
32 32 H 1.00902 * 111.00016 * 61.14226 * 21 19 18
33 33 H 1.08998 * 110.03247 * 240.87666 * 22 19 18
34 34 H 1.08995 * 110.03054 * 119.44514 * 22 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 7 3.1340 0.7580 -1.1552
5 6 3.4830 2.0762 -1.0128
6 1 4.1401 2.5415 -1.7326
7 6 2.9913 2.8134 0.0573
8 7 2.0444 2.3140 0.8194
9 14 3.6763 4.5145 0.4129
10 1 2.8871 5.5309 -0.3285
11 1 3.5910 4.7879 1.8700
12 1 5.0953 4.5772 -0.0203
13 6 3.2399 0.1589 -2.3578
14 8 3.7501 0.7491 -3.2865
15 6 2.7242 -1.2442 -2.5487
16 1 1.8375 -1.4122 -1.9375
17 6 2.4112 -1.5082 -4.0425
18 6 2.5025 -3.0507 -4.1479
19 6 3.6785 -3.4226 -3.2179
20 1 3.4640 -4.3558 -2.6971
21 7 4.9132 -3.5569 -4.0023
22 6 3.8203 -2.2737 -2.2042
23 1 -1.0501 -0.0003 0.0001
24 1 3.0098 -1.0252 -0.0581
25 1 3.0091 0.4635 0.9177
26 1 1.7013 2.8284 1.5667
27 1 1.4085 -1.1625 -4.2939
28 1 3.1541 -1.0325 -4.6827
29 1 1.5797 -3.5125 -3.7969
30 1 2.7141 -3.3511 -5.1742
31 1 4.8360 -4.3071 -4.6726
32 1 5.1485 -2.6879 -4.4579
33 1 4.8050 -1.8152 -2.2949
34 1 3.6747 -2.6493 -1.1914
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000300856063.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:34:24
Heat of formation + Delta-G solvation = 21.983172 kcal
Electronic energy + Delta-G solvation = -17139.248136 eV
Core-core repulsion = 14459.603096 eV
Total energy + Delta-G solvation = -2679.645039 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-39.37598 -37.27768 -35.10649 -32.39765 -31.74351 -31.16231 -28.66241 -26.71139
-26.29422 -24.48137 -21.25782 -19.81904 -18.50167 -17.82155 -16.78324 -16.37463
-15.84896 -14.98340 -14.74661 -14.25220 -13.84374 -13.79598 -13.22124 -12.73392
-12.27170 -12.18492 -11.66416 -11.58327 -11.21377 -11.11020 -10.98103 -10.69426
-10.56550 -10.49388 -10.27650 -10.23265 -9.37727 -9.24284 -8.80830 -8.56280
-8.35767 -7.80445 -6.27039 -3.88071 3.16902 3.25758 3.31009 3.70467
3.90498 4.07962 4.19883 4.67148 4.77887 4.87934 5.08689 5.15631
5.29466 5.49388 5.69028 5.74684 5.81075 5.90904 5.93543 5.97188
6.20053 6.24007 6.34056 6.50417 6.56496 6.74991 6.88720 7.09190
7.28950 7.56104 7.56950 8.10138 8.46490 8.83004 9.16185 9.39067
9.94047 10.72431
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.033035 B = 0.007741 C = 0.006914
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 847.373130 B = 3616.015901 C = 4048.661088
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.272 4.272
2 C -0.104 4.104
3 C 0.231 3.769
4 N -0.444 5.444
5 C -0.309 4.309
6 H 0.102 0.898
7 C 0.028 3.972
8 N -0.876 5.876
9 Si 0.927 3.073
10 H -0.279 1.279
11 H -0.283 1.283
12 H -0.270 1.270
13 C 0.464 3.536
14 O -0.584 6.584
15 C -0.110 4.110
16 H 0.086 0.914
17 C -0.104 4.104
18 C -0.159 4.159
19 C 0.090 3.910
20 H 0.079 0.921
21 N -0.844 5.844
22 C -0.105 4.105
23 H 0.198 0.802
24 H 0.058 0.942
25 H 0.118 0.882
26 H 0.268 0.732
27 H 0.062 0.938
28 H 0.080 0.920
29 H 0.066 0.934
30 H 0.061 0.939
31 H 0.334 0.666
32 H 0.344 0.656
33 H 0.077 0.923
34 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.431 -9.900 -2.854 10.312
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.291 4.291
2 C -0.106 4.106
3 C 0.108 3.892
4 N -0.162 5.162
5 C -0.436 4.436
6 H 0.119 0.881
7 C -0.175 4.175
8 N -0.515 5.515
9 Si 0.754 3.246
10 H -0.205 1.205
11 H -0.209 1.209
12 H -0.195 1.195
13 C 0.253 3.747
14 O -0.468 6.468
15 C -0.132 4.132
16 H 0.104 0.896
17 C -0.142 4.142
18 C -0.198 4.198
19 C -0.022 4.022
20 H 0.097 0.903
21 N -0.373 5.373
22 C -0.144 4.144
23 H 0.215 0.785
24 H 0.076 0.924
25 H 0.136 0.864
26 H 0.078 0.922
27 H 0.080 0.920
28 H 0.098 0.902
29 H 0.085 0.915
30 H 0.080 0.920
31 H 0.146 0.854
32 H 0.158 0.842
33 H 0.096 0.904
34 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges 0.129 -9.668 -2.407 9.964
hybrid contribution -0.929 1.197 -0.371 1.560
sum -0.800 -8.471 -2.778 8.950
Atomic orbital electron populations
1.24267 0.95381 1.06114 1.03341 1.23272 0.94418 0.95355 0.97572
1.18402 0.84066 0.93730 0.92994 1.43645 1.56224 1.10493 1.05803
1.19692 1.27335 0.85395 1.11222 0.88055 1.25327 0.95380 0.99726
0.97037 1.69965 1.24982 1.38095 1.18459 0.85921 0.79429 0.81928
0.77372 1.20487 1.20873 1.19464 1.19985 0.84027 0.88019 0.82711
1.90491 1.48419 1.67074 1.40795 1.22112 0.99096 0.94077 0.97900
0.89551 1.22317 1.01985 0.94181 0.95674 1.23261 0.99913 0.97299
0.99349 1.22093 0.87600 0.98489 0.94037 0.90313 1.58996 1.35246
1.10907 1.32104 1.22161 0.99558 0.94315 0.98344 0.78490 0.92402
0.86427 0.92171 0.91965 0.90154 0.91519 0.92036 0.85368 0.84223
0.90389 0.91238
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.27 -5.67 19.25 29.55 0.57 -5.10 16
2 C -0.10 -2.36 10.21 -37.12 -0.38 -2.74 16
3 C 0.23 5.19 4.81 -6.83 -0.03 5.16 16
4 N -0.44 -11.28 2.60 -117.94 -0.31 -11.58 16
5 C -0.31 -8.56 9.36 -14.94 -0.14 -8.70 16
6 H 0.10 2.95 7.33 -52.48 -0.38 2.56 16
7 C 0.03 0.73 5.13 -17.47 -0.09 0.64 16
8 N -0.88 -23.03 9.00 55.50 0.50 -22.53 16
9 Si 0.93 20.80 29.56 -169.99 -5.03 15.77 16
10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16
11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16
12 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16
13 C 0.46 11.26 6.59 -10.99 -0.07 11.19 16
14 O -0.58 -16.01 15.46 5.55 0.09 -15.92 16
15 C -0.11 -2.06 2.30 -90.11 -0.21 -2.27 16
16 H 0.09 1.62 6.23 -51.93 -0.32 1.30 16
17 C -0.10 -1.73 6.15 -24.74 -0.15 -1.88 16
18 C -0.16 -2.04 6.53 -24.97 -0.16 -2.20 16
19 C 0.09 1.18 4.05 -66.49 -0.27 0.91 16
20 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16
21 N -0.84 -10.47 9.11 -3.63 -0.03 -10.50 16
22 C -0.11 -1.69 5.62 -25.61 -0.14 -1.83 16
23 H 0.20 3.35 7.80 -54.08 -0.42 2.93 16
24 H 0.06 1.11 6.00 -51.93 -0.31 0.79 16
25 H 0.12 2.81 6.29 -51.93 -0.33 2.48 16
26 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16
27 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16
28 H 0.08 1.47 7.25 -51.93 -0.38 1.10 16
29 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16
30 H 0.06 0.70 8.04 -51.93 -0.42 0.28 16
31 H 0.33 3.34 9.06 -39.29 -0.36 2.98 16
32 H 0.34 4.53 8.97 -39.29 -0.35 4.18 16
33 H 0.08 1.40 7.59 -51.93 -0.39 1.01 16
34 H 0.07 1.02 7.31 -51.93 -0.38 0.64 16
LS Contribution 281.66 15.07 4.24 4.24
Total: -1.00 -30.45 281.66 -6.06 -36.51
By element:
Atomic # 1 Polarization: 15.28 SS G_CDS: -4.45 Total: 10.83 kcal
Atomic # 6 Polarization: -5.74 SS G_CDS: -1.08 Total: -6.82 kcal
Atomic # 7 Polarization: -44.78 SS G_CDS: 0.16 Total: -44.62 kcal
Atomic # 8 Polarization: -16.01 SS G_CDS: 0.09 Total: -15.92 kcal
Atomic # 14 Polarization: 20.80 SS G_CDS: -5.03 Total: 15.77 kcal
Total LS contribution 4.24 Total: 4.24 kcal
Total: -30.45 -6.06 -36.51 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000300856063.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 58.493 kcal
(2) G-P(sol) polarization free energy of solvation -30.447 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.046 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.063 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.510 kcal
(6) G-S(sol) free energy of system = (1) + (5) 21.983 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds